AT3G01920

yrdC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015282
Physical Location & Seq
Forward (+)
317336 .. 319121
1786 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G01920.1

Sequence Viewer

Length: 924 bp
ATGGCGGTGGCCAAACTTCACGGCGGAGGTATGGCGGCGATGCGTCTTCTTCTACTTCCTTCCCCGATGACGCACCGGCGACCATCAACGCTTCCGAGCACTGCCTCTTTATCTCCACGGAGATACATCGTCGCGTTGGCGGCCAAGAGAAGCCCTAAGCGTCTCAAATACTCTACTCCTCGTTTCACCAAGGAGGGGGAATTGGTGTACATCGAGGTCGATCCTTGTGGTGTTGATTCCTGGAAACTCCAACCTGTCATTGACCTTCTCAAACAAGGAGCTGTTGGTGTTATTCCCACTGATACCGTATATGCCATTGCTTGTGATTGTAAAAACCATTCCGCTGTTGAGCGTCTCCGAAGGATTAAAAAGATTGAATCCTCCAAGCCACTTAGCATCTTATGCCGTTCCTTACGAGATATTGACACTTTTACAATGGGCTTTCCTCGTGGTGATGGTCATGGTCATGCTAACGTTTTTCGAGCTGTCAAGCAATGCTTACCTGGTCCTTATACCTTCATCTTGACTGCAAGCAAGGAACTACCCAAACAGTGTGTAGGTTATGGCACCACAAGTGTGAAATATGCATCTAGGAAAAACGTGGGTGTCCGCATATCTGATGATGCTCTCTGCCAAGCTATTCTGCAGCAGATGGATGCCCCATTGATTTGCACAAGTGTGAAAGGGCCTAAAGAAAATGAATGGATGATCGACCCAACCGCAATAGGTGACATATATGGACCAGAGGGTCTGGATTTTGTGGTAGACGGAGGTATACGAGTGGCTGAACCATCCACCATCGTGGATATGACAGGACCATATCCCAAGGTCATAAGGGAAGGGAAGGGACCTATATTGCCGTGGATGGTGGTTGAGGACGACGAGTCTTCCCTGCGCCAAGATCTTATGGCGTCTGGCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sua5_yciO_yrdC

Protein Analysis

307

Amino Acids

33.54

Weight (kDa)

9.03

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sua5_yciO_yrdC PF01300 89 - 281 9.1e-44 Telomere recombination
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015282)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01920 AT3G01920
fragaria_vesca FvH4_6g53521
malus_domestica MD09G1010800.v1.1
prunus_persica Prupe.3G306300_v2.0.a1
pyrus_communis pycom111g00900
rosa_chinensis RchiOBHm_Chr2g0175561
rosa_laevigata RLG00000022339
rosa_multiflora Rmu_sc0013970.1_g000004
rosa_roxburghii Rroxscaffold_2G00077220
rosa_rugosa Rorug02G0586500
rosa_samantha Rh2AG665400 Rh2BG676200 Rh2CG639400 Rh2DG690200
rosa_wichuraiana Rw2G054550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 747
AccB1I GGYRCC 1 cut(s) 566
AccI GTMKAC 2 cut(s) 765, 775
AccII CGCG 1 cut(s) 134
AciI CCGC 7 cut(s) 5, 24, 35, 140, 342, 610, 720
AclI AACGTT 1 cut(s) 474
AclWI GGATC 1 cut(s) 215
AcoI YGGCCR 2 cut(s) 9, 141
AcyI GRCGYC 1 cut(s) 911
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 195
AgsI TTSAA 1 cut(s) 377
AhdI GACNNNNNGTC 1 cut(s) 883
AjnI CCWGG 2 cut(s) 239, 502
AleI CACNNNNGTG 3 cut(s) 575, 677, 800
AluBI AGCT 3 cut(s) 281, 485, 638
AluI AGCT 3 cut(s) 281, 485, 638
Alw21I GWGCWC 1 cut(s) 101
Alw26I GTCTC 2 cut(s) 167, 359
AlwI GGATC 1 cut(s) 215
AoxI GGCC 3 cut(s) 9, 141, 686
ApeKI GCWGC 1 cut(s) 646
AspLEI GCGC 1 cut(s) 897
AspS9I GGNCC 5 cut(s) 506, 686, 740, 815, 848
AsuHPI GGTGA 3 cut(s) 178, 464, 740
AvaII GGWCC 4 cut(s) 506, 740, 815, 848
BalI TGGCCA 1 cut(s) 11
BanI GGYRCC 1 cut(s) 566
BauI CACGAG 1 cut(s) 447
BbsI GAAGAC 2 cut(s) 38, 879
Bbv12I GWGCWC 1 cut(s) 101
BbvI GCAGC 1 cut(s) 658
BccI CCATC 6 cut(s) 91, 449, 646, 799, 806, 859
BceAI ACGGC 3 cut(s) 37, 390, 844
BciT130I CCWGG 2 cut(s) 241, 504
BcoDI GTCTC 2 cut(s) 167, 359
BfaI CTAG 1 cut(s) 591
BfmI CTRYAG 1 cut(s) 644
BglII AGATCT 1 cut(s) 901
BisI GCNGC 3 cut(s) 36, 141, 647
BlsI GCNGC 3 cut(s) 37, 142, 648
Bme1390I CCNGG 2 cut(s) 241, 504
Bme18I GGWCC 4 cut(s) 506, 740, 815, 848
BmeRI GACNNNNNGTC 1 cut(s) 883
BmgT120I GGNCC 5 cut(s) 506, 686, 740, 815, 848
BmiI GGNNCC 2 cut(s) 568, 849
BmrFI CCNGG 2 cut(s) 241, 504
BmsI GCATC 5 cut(s) 30, 405, 596, 613, 646
BpiI GAAGAC 2 cut(s) 38, 879
Bpu10I CCTNAGC 1 cut(s) 156
BsaHI GRCGYC 1 cut(s) 911
BsaJI CCNNGG 4 cut(s) 116, 189, 825, 860
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse118I RCCGGY 1 cut(s) 75
Bse3DI GCAATG 2 cut(s) 315, 500
BseBI CCWGG 2 cut(s) 241, 504
BseDI CCNNGG 4 cut(s) 116, 189, 825, 860
BseGI GGATG 4 cut(s) 661, 711, 791, 870
BseLI CCNNNNNNNGG 1 cut(s) 195
BseMI GCAATG 2 cut(s) 315, 500
BseRI GAGGAG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 658
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 3 cut(s) 11, 143, 688
BshNI GGYRCC 1 cut(s) 566
BsiHKAI GWGCWC 1 cut(s) 101
BsiSI CCGG 1 cut(s) 76
BslFI GGGAC 1 cut(s) 861
BslI CCNNNNNNNGG 1 cut(s) 195
BsmAI GTCTC 2 cut(s) 167, 359
BsmBI CGTCTC 2 cut(s) 167, 359
BsmFI GGGAC 1 cut(s) 861
BsnI GGCC 3 cut(s) 11, 143, 688
Bsp1286I GDGCHC 1 cut(s) 101
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 3 cut(s) 220, 708, 901
BspACI CCGC 7 cut(s) 5, 24, 35, 140, 342, 610, 720
BspANI GGCC 3 cut(s) 11, 143, 688
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 2 cut(s) 568, 849
BspMAI CTGCAG 1 cut(s) 648
BspPI GGATC 1 cut(s) 215
BspT107I GGYRCC 1 cut(s) 566
BsrDI GCAATG 2 cut(s) 315, 500
BsrFI RCCGGY 1 cut(s) 75
BsrGI TGTACA 1 cut(s) 207
BssAI RCCGGY 1 cut(s) 75
BssECI CCNNGG 4 cut(s) 116, 189, 825, 860
BssMI GATC 3 cut(s) 220, 708, 901
BssNAI GTATAC 1 cut(s) 776
BssNI GRCGYC 1 cut(s) 911
BssSI CACGAG 1 cut(s) 447
BssT1I CCWWGG 2 cut(s) 189, 825
Bst1107I GTATAC 1 cut(s) 776
Bst2BI CACGAG 1 cut(s) 447
Bst2UI CCWGG 2 cut(s) 241, 504
Bst4CI ACNGT 2 cut(s) 307, 552
BstACI GRCGYC 1 cut(s) 911
BstAPI GCANNNNNTGC 1 cut(s) 402
BstAUI TGTACA 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 532
BstDEI CTNAG 2 cut(s) 156, 392
BstDSI CCRYGG 2 cut(s) 116, 860
BstF5I GGATG 4 cut(s) 661, 711, 791, 870
BstFNI CGCG 1 cut(s) 134
BstHHI GCGC 1 cut(s) 897
BstKTI GATC 3 cut(s) 223, 711, 904
BstMAI GTCTC 2 cut(s) 167, 359
BstMBI GATC 3 cut(s) 220, 708, 901
BstMWI GCNNNNNNNGC 2 cut(s) 140, 402
BstNI CCWGG 2 cut(s) 241, 504
BstSCI CCNGG 2 cut(s) 239, 502
BstSFI CTRYAG 1 cut(s) 644
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 658
BstV2I GAAGAC 2 cut(s) 38, 879
BstX2I RGATCY 1 cut(s) 901
BstXI CCANNNNNNTGG 1 cut(s) 802
BstYI RGATCY 1 cut(s) 901
BstZ17I GTATAC 1 cut(s) 776
BsuRI GGCC 3 cut(s) 11, 143, 688
BtgI CCRYGG 2 cut(s) 116, 860
BtgZI GCGATG 1 cut(s) 53
BtsCI GGATG 4 cut(s) 661, 711, 791, 870
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 3 cut(s) 99, 297, 557
Cac8I GCNNGC 1 cut(s) 532
CfoI GCGC 1 cut(s) 897
Cfr10I RCCGGY 1 cut(s) 75
Cfr13I GGNCC 5 cut(s) 506, 686, 740, 815, 848
CseI GACGC 5 cut(s) 32, 79, 149, 341, 900
CsiI ACCWGGT 1 cut(s) 502
Csp6I GTAC 1 cut(s) 208
CviAII CATG 2 cut(s) 461, 467
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 2 cut(s) 156, 392
DpnI GATC 3 cut(s) 222, 710, 903
DpnII GATC 3 cut(s) 220, 708, 901
DrdI GACNNNNNNGTC 1 cut(s) 747
DriI GACNNNNNGTC 1 cut(s) 883
DseDI GACNNNNNNGTC 1 cut(s) 747
EaeI YGGCCR 2 cut(s) 9, 141
Eam1105I GACNNNNNGTC 1 cut(s) 883
EciI GGCGGA 1 cut(s) 39
Eco130I CCWWGG 2 cut(s) 189, 825
Eco47I GGWCC 4 cut(s) 506, 740, 815, 848
EcoO109I RGGNCCY 2 cut(s) 686, 848
EcoRII CCWGG 2 cut(s) 239, 502
EcoT14I CCWWGG 2 cut(s) 189, 825
EcoT22I ATGCAT 1 cut(s) 589
ErhI CCWWGG 2 cut(s) 189, 825
Esp3I CGTCTC 2 cut(s) 167, 359
FaeI CATG 2 cut(s) 464, 470
FalI AAGNNNNNCTT 2 cut(s) 482, 514
FaqI GGGAC 1 cut(s) 861
FatI CATG 2 cut(s) 460, 466
FblI GTMKAC 2 cut(s) 765, 775
Fnu4HI GCNGC 3 cut(s) 36, 141, 647
FokI GGATG 4 cut(s) 668, 718, 778, 877
Fsp4HI GCNGC 3 cut(s) 36, 141, 647
FspBI CTAG 1 cut(s) 591
GlaI GCGC 1 cut(s) 896
GluI GCNGC 3 cut(s) 36, 141, 647
HaeIII GGCC 3 cut(s) 11, 143, 688
HapII CCGG 1 cut(s) 76
HgaI GACGC 5 cut(s) 32, 79, 149, 341, 900
HhaI GCGC 1 cut(s) 897
Hin1I GRCGYC 1 cut(s) 911
Hin1II CATG 2 cut(s) 464, 470
Hin6I GCGC 1 cut(s) 895
HinP1I GCGC 1 cut(s) 895
HinfI GANTC 3 cut(s) 236, 377, 884
HpaII CCGG 1 cut(s) 76
HphI GGTGA 3 cut(s) 178, 464, 740
Hpy166II GTNNAC 3 cut(s) 208, 766, 776
Hpy188I TCNGA 3 cut(s) 96, 359, 619
Hpy188III TCNNGA 2 cut(s) 523, 752
Hpy8I GTNNAC 3 cut(s) 208, 766, 776
Hpy99I CGWCG 2 cut(s) 134, 884
HpyAV CCTTC 6 cut(s) 69, 275, 354, 526, 833, 838
HpyCH4III ACNGT 2 cut(s) 307, 552
HpyCH4IV ACGT 2 cut(s) 474, 600
HpyCH4V TGCA 4 cut(s) 530, 587, 646, 672
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 402
HpyF3I CTNAG 2 cut(s) 156, 392
HpySE526I ACGT 2 cut(s) 474, 600
Hsp92I GRCGYC 1 cut(s) 911
Hsp92II CATG 2 cut(s) 464, 470
HspAI GCGC 1 cut(s) 895
Kzo9I GATC 3 cut(s) 220, 708, 901
LmnI GCTCC 1 cut(s) 278
Lsp1109I GCAGC 1 cut(s) 658
LweI GCATC 5 cut(s) 30, 405, 596, 613, 646
MabI ACCWGGT 1 cut(s) 502
MaeI CTAG 1 cut(s) 591
MaeII ACGT 2 cut(s) 474, 600
MaeIII GTNAC 1 cut(s) 728
MalI GATC 3 cut(s) 222, 710, 903
MboI GATC 3 cut(s) 220, 708, 901
MboII GAAGA 3 cut(s) 38, 41, 879
MflI RGATCY 1 cut(s) 901
MhlI GDGCHC 1 cut(s) 101
MlsI TGGCCA 1 cut(s) 11
MluCI AATT 1 cut(s) 200
MluNI TGGCCA 1 cut(s) 11
MlyI GAGTC 1 cut(s) 893
MmeI TCCRAC 1 cut(s) 274
Mox20I TGGCCA 1 cut(s) 11
Mph1103I ATGCAT 1 cut(s) 589
MscI TGGCCA 1 cut(s) 11
MseI TTAA 2 cut(s) 366, 922
MslI CAYNNNNRTG 4 cut(s) 465, 575, 677, 800
Msp20I TGGCCA 1 cut(s) 11
MspA1I CMGCKG 1 cut(s) 344
MspI CCGG 1 cut(s) 76
MspR9I CCNGG 2 cut(s) 241, 504
MvaI CCWGG 2 cut(s) 241, 504
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 2 cut(s) 140, 402
NdeII GATC 3 cut(s) 220, 708, 901
NlaIII CATG 2 cut(s) 464, 470
NlaIV GGNNCC 2 cut(s) 568, 849
NmuCI GTSAC 1 cut(s) 728
NsiI ATGCAT 1 cut(s) 589
OliI CACNNNNGTG 3 cut(s) 575, 677, 800
PfeI GAWTC 2 cut(s) 236, 377
PfoI TCCNGGA 1 cut(s) 239
PkrI GCNGC 3 cut(s) 37, 142, 648
PleI GAGTC 1 cut(s) 892
PpsI GAGTC 1 cut(s) 892
PpuMI RGGWCCY 1 cut(s) 848
Psp1406I AACGTT 1 cut(s) 474
Psp5II RGGWCCY 1 cut(s) 848
Psp6I CCWGG 2 cut(s) 239, 502
PspGI CCWGG 2 cut(s) 239, 502
PspN4I GGNNCC 2 cut(s) 568, 849
PspPI GGNCC 5 cut(s) 506, 686, 740, 815, 848
PspPPI RGGWCCY 1 cut(s) 848
PstI CTGCAG 1 cut(s) 648
PsuI RGATCY 1 cut(s) 901
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 4 cut(s) 465, 575, 677, 800
SaqAI TTAA 2 cut(s) 366, 922
SatI GCNGC 3 cut(s) 36, 141, 647
Sau3AI GATC 3 cut(s) 220, 708, 901
Sau96I GGNCC 5 cut(s) 506, 686, 740, 815, 848
SchI GAGTC 1 cut(s) 893
ScrFI CCNGG 2 cut(s) 241, 504
SduI GDGCHC 1 cut(s) 101
SexAI ACCWGGT 1 cut(s) 502
SfaNI GCATC 5 cut(s) 30, 405, 596, 613, 646
SfcI CTRYAG 1 cut(s) 644
SgrAI CRCCGGYG 1 cut(s) 75
SinI GGWCC 4 cut(s) 506, 740, 815, 848
SmiMI CAYNNNNRTG 4 cut(s) 465, 575, 677, 800
Sse9I AATT 1 cut(s) 200
SsiI CCGC 7 cut(s) 5, 24, 35, 140, 342, 610, 720
SspMI CTAG 1 cut(s) 591
StyD4I CCNGG 2 cut(s) 239, 502
StyI CCWWGG 2 cut(s) 189, 825
TaaI ACNGT 2 cut(s) 307, 552
TaiI ACGT 2 cut(s) 477, 603
TaqI TCGA 4 cut(s) 213, 219, 481, 711
TasI AATT 1 cut(s) 200
TatI WGTACW 1 cut(s) 207
TauI GCSGC 2 cut(s) 38, 143
TfiI GAWTC 2 cut(s) 236, 377
Tru1I TTAA 2 cut(s) 366, 922
Tru9I TTAA 2 cut(s) 366, 922
TscAI CASTG 3 cut(s) 106, 304, 557
TseFI GTSAC 1 cut(s) 728
TseI GCWGC 1 cut(s) 646
Tsp45I GTSAC 1 cut(s) 728
TspDTI ATGAA 2 cut(s) 508, 714
TspGWI ACGGA 2 cut(s) 133, 783
TspRI CASTG 3 cut(s) 106, 304, 557
VpaK11BI GGWCC 4 cut(s) 506, 740, 815, 848
XmiI GTMKAC 2 cut(s) 765, 775
XspI CTAG 1 cut(s) 591
Zsp2I ATGCAT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.