Rmu_sc0013970.1_g000004

yrdC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013970.1
OG0015282
Physical Location & Seq
Reverse (-)
11200 .. 13444
2245 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013970.1_g000004.1.cds

Sequence Viewer

Length: 972 bp
atggcaatggcttctcgtccaaaactctacgccggcgacttagcttcatctttcagcttctcccggtctttgccaaaccctaagcttttcccctctccacgtgcctacttcgccgctccgaaaagccggcggttccaagtgttggctttcgccgtcaagcggagccctaagcgtctcaaatactccactcctcgcttcaccaaggaggatgagttactgtatgtcggagttgatccatcaggagttgatagctggaaattggagccggtcattgatcttctgaaacaaggagcggttggggtcattcctactgacactgtgtatgcaatagtctgtgacccgagaaaccactcagccattgatcgtcttcgtagaatcaagaaaatcgagtctacaaagcccctcaccatcttgtgtcactcgttccatgacattgatcgatttacaacaggcttccctcgtggtgattccaaaggtcatgcaaatatcttccgagctgttaagcaatgcttacctgggccttataccttcatcctaactgcaaccaaagaactacctaagcagtgtatagggtttgggacggcaattgccaaatacaaatctaggaaaaatgtgggtgttcgtatgcctgctgatgccatctgtcaagcgatactggagaagatggatacaccattgatttccacaagttgcaagtgcccgaaggaaaatgagtggattttggatccagttgttatagctgatacatatggaccagagggccttgattttgtcattgatggtgggttaagagtggctgatccatcaactgtggttgacatgacagtgtttcctcccaagatcatacgacaaggaaagggacctcaattacactggatggtggctgaagatgacaatgaagatgaatatgaagatgacaatgaacatgctgagacagtggaaagctcatctcctcaaccactcagaagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sua5_yciO_yrdC

Protein Analysis

323

Amino Acids

36.03

Weight (kDa)

8.72

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015282)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01920 AT3G01920
fragaria_vesca FvH4_6g53521
malus_domestica MD09G1010800.v1.1
prunus_persica Prupe.3G306300_v2.0.a1
pyrus_communis pycom111g00900
rosa_chinensis RchiOBHm_Chr2g0175561
rosa_laevigata RLG00000022339
rosa_multiflora Rmu_sc0013970.1_g000004
rosa_roxburghii Rroxscaffold_2G00077220
rosa_rugosa Rorug02G0586500
rosa_samantha Rh2AG665400 Rh2BG676200 Rh2CG639400 Rh2DG690200
rosa_wichuraiana Rw2G054550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 142
AccBSI CCGCTC 2 cut(s) 116, 293
AccI GTMKAC 1 cut(s) 392
AciI CCGC 4 cut(s) 114, 130, 160, 293
AclWI GGATC 4 cut(s) 227, 719, 732, 794
AcuI CTGAAG 1 cut(s) 906
AcvI CACGTG 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 142, 159
AjnI CCWGG 1 cut(s) 514
AluBI AGCT 7 cut(s) 44, 57, 85, 252, 497, 740, 945
AluI AGCT 7 cut(s) 44, 57, 85, 252, 497, 740, 945
Alw26I GTCTC 2 cut(s) 179, 926
AlwI GGATC 4 cut(s) 227, 719, 732, 794
Ama87I CYCGRG 1 cut(s) 340
AoxI GGCC 2 cut(s) 518, 760
AspS9I GGNCC 4 cut(s) 518, 752, 760, 860
AsuC2I CCSGG 1 cut(s) 64
AsuHPI GGTGA 3 cut(s) 190, 397, 476
AvaI CYCGRG 1 cut(s) 340
AvaII GGWCC 2 cut(s) 752, 860
BaeGI GKGCMC 1 cut(s) 701
BamHI GGATCC 1 cut(s) 724
BanII GRGCYC 1 cut(s) 167
BauI CACGAG 1 cut(s) 459
BbrPI CACGTG 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 359
BccI CCATC 7 cut(s) 244, 416, 647, 658, 773, 811, 871
BceAI ACGGC 2 cut(s) 137, 597
BciT130I CCWGG 1 cut(s) 516
BciVI GTATCC 1 cut(s) 661
BcnI CCSGG 1 cut(s) 64
BcoDI GTCTC 2 cut(s) 179, 926
BfaI CTAG 1 cut(s) 603
BfuI GTATCC 1 cut(s) 661
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 2 cut(s) 64, 516
Bme18I GGWCC 2 cut(s) 752, 860
BmeT110I CYCGRG 1 cut(s) 340
BmgT120I GGNCC 4 cut(s) 518, 752, 760, 860
BmiI GGNNCC 5 cut(s) 134, 164, 264, 726, 861
BmrFI CCNGG 2 cut(s) 64, 516
BmsI GCATC 1 cut(s) 625
BpiI GAAGAC 1 cut(s) 359
BpmI CTGGAG 1 cut(s) 677
Bpu10I CCTNAGC 3 cut(s) 81, 168, 558
BpuMI CCSGG 1 cut(s) 64
Bsa29I ATCGAT 1 cut(s) 439
BsaAI YACGTR 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 201, 515
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 159
Bse118I RCCGGY 3 cut(s) 32, 126, 265
Bse1I ACTGG 3 cut(s) 660, 728, 878
Bse3DI GCAATG 2 cut(s) 12, 512
BseBI CCWGG 1 cut(s) 516
BseCI ATCGAT 1 cut(s) 439
BseDI CCNNGG 2 cut(s) 201, 515
BseGI GGATG 3 cut(s) 214, 531, 882
BseLI CCNNNNNNNGG 2 cut(s) 142, 159
BseMI GCAATG 2 cut(s) 12, 512
BseMII CTCAG 2 cut(s) 366, 921
BseNI ACTGG 3 cut(s) 660, 728, 878
BseRI GAGGAG 2 cut(s) 180, 942
BseSI GKGCMC 1 cut(s) 701
BshFI GGCC 2 cut(s) 520, 762
BshVI ATCGAT 1 cut(s) 439
BsiHKCI CYCGRG 1 cut(s) 340
BsiSI CCGG 4 cut(s) 33, 64, 127, 266
BslFI GGGAC 2 cut(s) 592, 873
BslI CCNNNNNNNGG 2 cut(s) 142, 159
BsmAI GTCTC 2 cut(s) 179, 926
BsmBI CGTCTC 1 cut(s) 179
BsmFI GGGAC 2 cut(s) 592, 873
BsnI GGCC 2 cut(s) 520, 762
BsoBI CYCGRG 1 cut(s) 340
Bsp1286I GDGCHC 2 cut(s) 167, 701
Bsp143I GATC 7 cut(s) 232, 274, 361, 436, 724, 799, 840
BspACI CCGC 4 cut(s) 114, 130, 160, 293
BspANI GGCC 2 cut(s) 520, 762
BspCNI CTCAG 2 cut(s) 365, 922
BspDI ATCGAT 1 cut(s) 439
BspLI GGNNCC 5 cut(s) 134, 164, 264, 726, 861
BspPI GGATC 4 cut(s) 227, 719, 732, 794
BsrBI CCGCTC 2 cut(s) 116, 293
BsrDI GCAATG 2 cut(s) 12, 512
BsrFI RCCGGY 3 cut(s) 32, 126, 265
BsrI ACTGG 3 cut(s) 660, 728, 878
BssAI RCCGGY 3 cut(s) 32, 126, 265
BssECI CCNNGG 2 cut(s) 201, 515
BssMI GATC 7 cut(s) 232, 274, 361, 436, 724, 799, 840
BssSI CACGAG 1 cut(s) 459
BssT1I CCWWGG 1 cut(s) 201
Bst2BI CACGAG 1 cut(s) 459
Bst2UI CCWGG 1 cut(s) 516
Bst4CI ACNGT 5 cut(s) 219, 319, 811, 826, 937
BstBAI YACGTR 1 cut(s) 101
BstC8I GCNNGC 3 cut(s) 34, 128, 630
BstDEI CTNAG 7 cut(s) 40, 81, 168, 352, 558, 930, 962
BstF5I GGATG 3 cut(s) 214, 531, 882
BstKTI GATC 7 cut(s) 235, 277, 364, 439, 727, 802, 843
BstMAI GTCTC 2 cut(s) 179, 926
BstMBI GATC 7 cut(s) 232, 274, 361, 436, 724, 799, 840
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 516
BstNSI RCATGY 1 cut(s) 929
BstSCI CCNGG 2 cut(s) 62, 514
BstSLI GKGCMC 1 cut(s) 701
BstV2I GAAGAC 1 cut(s) 359
BstX2I RGATCY 1 cut(s) 724
BstYI RGATCY 1 cut(s) 724
Bsu15I ATCGAT 1 cut(s) 439
BsuI GTATCC 1 cut(s) 661
BsuRI GGCC 2 cut(s) 520, 762
BsuTUI ATCGAT 1 cut(s) 439
BtsCI GGATG 3 cut(s) 214, 531, 882
BtsI GCAGTG 1 cut(s) 569
BtsIMutI CAGTG 5 cut(s) 315, 569, 831, 871, 942
Cac8I GCNNGC 3 cut(s) 34, 128, 630
Cfr10I RCCGGY 3 cut(s) 32, 126, 265
Cfr13I GGNCC 4 cut(s) 518, 752, 760, 860
ClaI ATCGAT 1 cut(s) 439
CseI GACGC 1 cut(s) 161
CviAII CATG 4 cut(s) 428, 479, 820, 926
DdeI CTNAG 7 cut(s) 40, 81, 168, 352, 558, 930, 962
DpnI GATC 7 cut(s) 234, 276, 363, 438, 726, 801, 842
DpnII GATC 7 cut(s) 232, 274, 361, 436, 724, 799, 840
Eco130I CCWWGG 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 167
Eco47I GGWCC 2 cut(s) 752, 860
Eco57I CTGAAG 1 cut(s) 906
Eco72I CACGTG 1 cut(s) 101
Eco88I CYCGRG 1 cut(s) 340
EcoO109I RGGNCCY 2 cut(s) 760, 860
EcoRII CCWGG 1 cut(s) 514
EcoT14I CCWWGG 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 201
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 4 cut(s) 431, 482, 823, 929
FalI AAGNNNNNCTT 2 cut(s) 494, 526
FaqI GGGAC 2 cut(s) 592, 873
FatI CATG 4 cut(s) 427, 478, 819, 925
FauNDI CATATG 1 cut(s) 748
FblI GTMKAC 1 cut(s) 392
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 3 cut(s) 221, 518, 889
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 1 cut(s) 603
GluI GCNGC 1 cut(s) 114
GsuI CTGGAG 1 cut(s) 677
HaeIII GGCC 2 cut(s) 520, 762
HapII CCGG 4 cut(s) 33, 64, 127, 266
HgaI GACGC 1 cut(s) 161
Hin1II CATG 4 cut(s) 431, 482, 823, 929
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 3 cut(s) 375, 389, 467
HpaII CCGG 4 cut(s) 33, 64, 127, 266
HphI GGTGA 3 cut(s) 190, 397, 476
Hpy166II GTNNAC 2 cut(s) 393, 817
Hpy188I TCNGA 5 cut(s) 120, 227, 282, 494, 965
Hpy188III TCNNGA 2 cut(s) 240, 379
Hpy8I GTNNAC 2 cut(s) 393, 817
HpyAV CCTTC 2 cut(s) 538, 697
HpyCH4III ACNGT 5 cut(s) 219, 319, 811, 826, 937
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 4 cut(s) 326, 482, 542, 693
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 7 cut(s) 40, 81, 168, 352, 558, 930, 962
HpySE526I ACGT 1 cut(s) 100
Hsp92II CATG 4 cut(s) 431, 482, 823, 929
KroI GCCGGC 2 cut(s) 32, 126
KroNI GCCGGC 2 cut(s) 34, 128
Kzo9I GATC 7 cut(s) 232, 274, 361, 436, 724, 799, 840
LmnI GCTCC 4 cut(s) 121, 162, 262, 290
LweI GCATC 1 cut(s) 625
MaeI CTAG 1 cut(s) 603
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 3 cut(s) 213, 335, 416
MalI GATC 7 cut(s) 234, 276, 363, 438, 726, 801, 842
MbiI CCGCTC 2 cut(s) 116, 293
MboI GATC 7 cut(s) 232, 274, 361, 436, 724, 799, 840
MboII GAAGA 7 cut(s) 269, 359, 481, 673, 899, 911, 923
MfeI CAATTG 1 cut(s) 585
MflI RGATCY 1 cut(s) 724
MhlI GDGCHC 2 cut(s) 167, 701
MluCI AATT 3 cut(s) 257, 585, 866
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 9 cut(s) 103, 199, 201, 413, 468, 751, 843, 873, 963
MreI CGCCGGCG 1 cut(s) 32
MroNI GCCGGC 2 cut(s) 32, 126
MseI TTAA 2 cut(s) 501, 788
MslI CAYNNNNRTG 1 cut(s) 824
MspI CCGG 4 cut(s) 33, 64, 127, 266
MspR9I CCNGG 2 cut(s) 64, 516
MunI CAATTG 1 cut(s) 585
MvaI CCWGG 1 cut(s) 516
MwoI GCNNNNNNNGC 1 cut(s) 110
NaeI GCCGGC 2 cut(s) 34, 128
NciI CCSGG 1 cut(s) 64
NdeI CATATG 1 cut(s) 748
NdeII GATC 7 cut(s) 232, 274, 361, 436, 724, 799, 840
NgoMIV GCCGGC 2 cut(s) 32, 126
NlaIII CATG 4 cut(s) 431, 482, 823, 929
NlaIV GGNNCC 5 cut(s) 134, 164, 264, 726, 861
NmuCI GTSAC 2 cut(s) 335, 416
NspI RCATGY 1 cut(s) 929
PdiI GCCGGC 2 cut(s) 34, 128
PfeI GAWTC 2 cut(s) 375, 467
PflMI CCANNNNNTGG 1 cut(s) 142
PkrI GCNGC 1 cut(s) 115
PleI GAGTC 1 cut(s) 397
PmaCI CACGTG 1 cut(s) 101
PmlI CACGTG 1 cut(s) 101
PpsI GAGTC 1 cut(s) 397
Ppu21I YACGTR 1 cut(s) 101
PpuMI RGGWCCY 1 cut(s) 860
Psp5II RGGWCCY 1 cut(s) 860
Psp6I CCWGG 1 cut(s) 514
PspCI CACGTG 1 cut(s) 101
PspGI CCWGG 1 cut(s) 514
PspN4I GGNNCC 5 cut(s) 134, 164, 264, 726, 861
PspPI GGNCC 4 cut(s) 518, 752, 760, 860
PspPPI RGGWCCY 1 cut(s) 860
PsuI RGATCY 1 cut(s) 724
RseI CAYNNNNRTG 1 cut(s) 824
SaqAI TTAA 2 cut(s) 501, 788
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 7 cut(s) 232, 274, 361, 436, 724, 799, 840
Sau96I GGNCC 4 cut(s) 518, 752, 760, 860
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 2 cut(s) 64, 516
SduI GDGCHC 2 cut(s) 167, 701
SfaNI GCATC 1 cut(s) 625
SgrAI CRCCGGYG 1 cut(s) 32
SinI GGWCC 2 cut(s) 752, 860
SmiMI CAYNNNNRTG 1 cut(s) 824
Sse9I AATT 3 cut(s) 257, 585, 866
SsiI CCGC 4 cut(s) 114, 130, 160, 293
SspMI CTAG 1 cut(s) 603
StyD4I CCNGG 2 cut(s) 62, 514
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 5 cut(s) 219, 319, 811, 826, 937
TaiI ACGT 1 cut(s) 103
TaqI TCGA 2 cut(s) 387, 439
TasI AATT 3 cut(s) 257, 585, 866
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 2 cut(s) 375, 467
Tru1I TTAA 2 cut(s) 501, 788
Tru9I TTAA 2 cut(s) 501, 788
TscAI CASTG 5 cut(s) 322, 569, 831, 878, 942
TseFI GTSAC 2 cut(s) 335, 416
Tsp45I GTSAC 2 cut(s) 335, 416
TspDTI ATGAA 6 cut(s) 36, 520, 912, 918, 924, 936
TspRI CASTG 5 cut(s) 322, 569, 831, 878, 942
Van91I CCANNNNNTGG 1 cut(s) 142
VpaK11BI GGWCC 2 cut(s) 752, 860
XceI RCATGY 1 cut(s) 929
XmiI GTMKAC 1 cut(s) 392
XspI CTAG 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.