FvH4_6g53521

yrdC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015282
Physical Location & Seq
Forward (+)
39214912 .. 39217807
2896 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53521.t1

Sequence Viewer

Length: 969 bp
ATGGCGATAGCTTCTCCGACGAAGCTCCACGCCGGCGACCTAGCTTCGTCTTTCAGCTTCTCCCGCTCTTCTCGGAACCCCAAGCTTCTCTCCTCTTCTTCTCCAAGCCGCGTCTACTTCGCCGCTCCGAAAACCCGGCGGTTCCAAGTGTCTGCTTTCGCTGTGAAACGCAGCCCTAAGCGCCTCAAATACTCCGGTCCTCGCTTCACCAAGGAGGATGAGTTGCTGTATGTAGAAGTTGATCCATCAGGAGATGATAGCTGGAAATTGGAGCCGATTCTTGATCTTCTGAAGCAAGGAGCGGTTGGAGTCATTCCTACTGACACTGTGTATGCAATTGTCTGTGATCCGAGAAACCACTCTGCCGTTGATCGTCTTTGCAGAATCAAGAAAATCGAGTCTACAAAGCCCCTCACCATCTTGTGCCACTCGTTCCACGACATTGATCGGTTTACAACAGGCTTCCCTCGTGGAGATTCCAAAGGTCATGCAAATATCTTCCGAGCTGTTAAGCAATGCTTACCTGGGCCTTATACCTTCATTCTAACTGCAACCAAGGAACTACCTAAGCAGTGTATAAGGTTTGGGACAACAACTGCCAAATACAAATCTAGGAAAGATGTGGGTGTTCGTATACCTGATGATGCCATCTGTCAAGCGATACTGGAGAAGATGGATTCACCATTGATTTCCACTAGTTGCAAGTGCCCAAAGGAAAATGAGTGGATTTTGGATCCAGTTGTTATAGCTGATACGTATAGACCAGAGGGCCTTGATTTTGTCATTGATGGTGGGTTAAGAGTGGCTGATCCATCGACTGTGGTTGACATGACAGTTTTTCCTCCCAAAATCATGCGACAAGGAAAGGGACCTCAGTTACACTGGATGGTAGCTGAAGATGACTATGAAGATGACAATGAACCTGCTGAGTCGGTCAAAAGCTCATCTCCTCTACCGCTCGGAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sua5_yciO_yrdC

Protein Analysis

323

Amino Acids

35.78

Weight (kDa)

8.8

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sua5_yciO_yrdC PF01300 96 - 288 1.3e-42 Telomere recombination
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015282)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01920 AT3G01920
fragaria_vesca FvH4_6g53521
malus_domestica MD09G1010800.v1.1
prunus_persica Prupe.3G306300_v2.0.a1
pyrus_communis pycom111g00900
rosa_chinensis RchiOBHm_Chr2g0175561
rosa_laevigata RLG00000022339
rosa_multiflora Rmu_sc0013970.1_g000004
rosa_roxburghii Rroxscaffold_2G00077220
rosa_rugosa Rorug02G0586500
rosa_samantha Rh2AG665400 Rh2BG676200 Rh2CG639400 Rh2DG690200
rosa_wichuraiana Rw2G054550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 931
AccBSI CCGCTC 4 cut(s) 66, 125, 302, 958
AccI GTMKAC 3 cut(s) 114, 401, 634
AccII CGCG 1 cut(s) 111
AciI CCGC 6 cut(s) 64, 109, 123, 139, 302, 956
AclWI GGATC 5 cut(s) 236, 341, 728, 741, 803
AcuI CTGAAG 2 cut(s) 311, 915
AhlI ACTAGT 1 cut(s) 695
AjnI CCWGG 1 cut(s) 523
AlwI GGATC 5 cut(s) 236, 341, 728, 741, 803
AoxI GGCC 2 cut(s) 527, 769
ApeKI GCWGC 1 cut(s) 171
AspLEI GCGC 1 cut(s) 183
AspS9I GGNCC 4 cut(s) 197, 527, 769, 869
AsuC2I CCSGG 1 cut(s) 136
AsuHPI GGTGA 3 cut(s) 199, 406, 672
AvaII GGWCC 2 cut(s) 197, 869
BaeGI GKGCMC 1 cut(s) 710
BamHI GGATCC 1 cut(s) 733
BauI CACGAG 1 cut(s) 468
BbvI GCAGC 1 cut(s) 183
BccI CCATC 7 cut(s) 253, 425, 656, 667, 782, 820, 880
BceAI ACGGC 1 cut(s) 350
BciT130I CCWGG 1 cut(s) 525
BcnI CCSGG 1 cut(s) 136
BcuI ACTAGT 1 cut(s) 695
BfaI CTAG 3 cut(s) 41, 612, 696
BfoI RGCGCY 1 cut(s) 184
BfuAI ACCTGC 1 cut(s) 931
BisI GCNGC 3 cut(s) 109, 123, 172
BlsI GCNGC 3 cut(s) 110, 124, 173
Bme1390I CCNGG 2 cut(s) 136, 525
Bme18I GGWCC 2 cut(s) 197, 869
BmgT120I GGNCC 4 cut(s) 197, 527, 769, 869
BmiI GGNNCC 5 cut(s) 77, 143, 273, 735, 870
BmrFI CCNGG 2 cut(s) 136, 525
BmsI GCATC 1 cut(s) 634
BpmI CTGGAG 1 cut(s) 686
Bpu10I CCTNAGC 2 cut(s) 177, 567
BpuMI CCSGG 1 cut(s) 136
BsaAI YACGTR 1 cut(s) 756
BsaJI CCNNGG 3 cut(s) 210, 524, 555
BsaWI WCCGGW 1 cut(s) 194
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bse118I RCCGGY 1 cut(s) 32
Bse1I ACTGG 3 cut(s) 669, 737, 887
Bse3DI GCAATG 1 cut(s) 521
BseBI CCWGG 1 cut(s) 525
BseDI CCNNGG 3 cut(s) 210, 524, 555
BseGI GGATG 2 cut(s) 223, 891
BseMI GCAATG 1 cut(s) 521
BseMII CTCAG 2 cut(s) 887, 918
BseNI ACTGG 3 cut(s) 669, 737, 887
BseRI GAGGAG 2 cut(s) 82, 939
BseSI GKGCMC 1 cut(s) 710
BseXI GCAGC 1 cut(s) 183
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 2 cut(s) 529, 771
BsiSI CCGG 3 cut(s) 33, 136, 195
BslFI GGGAC 2 cut(s) 601, 882
BsmFI GGGAC 2 cut(s) 601, 882
BsnI GGCC 2 cut(s) 529, 771
Bsp1286I GDGCHC 1 cut(s) 710
Bsp143I GATC 7 cut(s) 241, 283, 346, 370, 445, 733, 808
BspACI CCGC 6 cut(s) 64, 109, 123, 139, 302, 956
BspANI GGCC 2 cut(s) 529, 771
BspCNI CTCAG 2 cut(s) 886, 919
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 5 cut(s) 77, 143, 273, 735, 870
BspMI ACCTGC 1 cut(s) 931
BspPI GGATC 5 cut(s) 236, 341, 728, 741, 803
BspQI GCTCTTC 1 cut(s) 73
BsrBI CCGCTC 4 cut(s) 66, 125, 302, 958
BsrDI GCAATG 1 cut(s) 521
BsrFI RCCGGY 1 cut(s) 32
BsrI ACTGG 3 cut(s) 669, 737, 887
BssAI RCCGGY 1 cut(s) 32
BssECI CCNNGG 3 cut(s) 210, 524, 555
BssMI GATC 7 cut(s) 241, 283, 346, 370, 445, 733, 808
BssNAI GTATAC 1 cut(s) 635
BssSI CACGAG 1 cut(s) 468
BssT1I CCWWGG 2 cut(s) 210, 555
Bst1107I GTATAC 1 cut(s) 635
Bst2BI CACGAG 1 cut(s) 468
Bst2UI CCWGG 1 cut(s) 525
Bst4CI ACNGT 3 cut(s) 328, 820, 835
Bst6I CTCTTC 2 cut(s) 73, 100
BstBAI YACGTR 1 cut(s) 756
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 4 cut(s) 177, 567, 873, 927
BstF5I GGATG 2 cut(s) 223, 891
BstFNI CGCG 1 cut(s) 111
BstH2I RGCGCY 1 cut(s) 184
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 7 cut(s) 244, 286, 349, 373, 448, 736, 811
BstMBI GATC 7 cut(s) 241, 283, 346, 370, 445, 733, 808
BstMWI GCNNNNNNNGC 2 cut(s) 63, 180
BstNI CCWGG 1 cut(s) 525
BstSCI CCNGG 2 cut(s) 134, 523
BstSLI GKGCMC 1 cut(s) 710
BstSNI TACGTA 1 cut(s) 756
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 733
BstYI RGATCY 1 cut(s) 733
BstZ17I GTATAC 1 cut(s) 635
BsuRI GGCC 2 cut(s) 529, 771
BtsCI GGATG 2 cut(s) 223, 891
BtsI GCAGTG 1 cut(s) 578
BtsIMutI CAGTG 3 cut(s) 324, 578, 880
BveI ACCTGC 1 cut(s) 931
Cac8I GCNNGC 1 cut(s) 34
CfoI GCGC 1 cut(s) 183
Cfr10I RCCGGY 1 cut(s) 32
Cfr13I GGNCC 4 cut(s) 197, 527, 769, 869
CseI GACGC 1 cut(s) 100
CviAII CATG 3 cut(s) 488, 829, 853
DdeI CTNAG 4 cut(s) 177, 567, 873, 927
DpnI GATC 7 cut(s) 243, 285, 348, 372, 447, 735, 810
DpnII GATC 7 cut(s) 241, 283, 346, 370, 445, 733, 808
Eam1104I CTCTTC 2 cut(s) 73, 100
EarI CTCTTC 2 cut(s) 73, 100
Eco105I TACGTA 1 cut(s) 756
Eco130I CCWWGG 2 cut(s) 210, 555
Eco47I GGWCC 2 cut(s) 197, 869
Eco57I CTGAAG 2 cut(s) 311, 915
EcoO109I RGGNCCY 2 cut(s) 769, 869
EcoRII CCWGG 1 cut(s) 523
EcoT14I CCWWGG 2 cut(s) 210, 555
ErhI CCWWGG 2 cut(s) 210, 555
FaeI CATG 3 cut(s) 491, 832, 856
FalI AAGNNNNNCTT 2 cut(s) 503, 535
FaqI GGGAC 2 cut(s) 601, 882
FatI CATG 3 cut(s) 487, 828, 852
FauI CCCGC 1 cut(s) 71
FblI GTMKAC 3 cut(s) 114, 401, 634
Fnu4HI GCNGC 3 cut(s) 109, 123, 172
FokI GGATG 2 cut(s) 230, 898
Fsp4HI GCNGC 3 cut(s) 109, 123, 172
FspBI CTAG 3 cut(s) 41, 612, 696
GlaI GCGC 1 cut(s) 182
GluI GCNGC 3 cut(s) 109, 123, 172
GsuI CTGGAG 1 cut(s) 686
HaeII RGCGCY 1 cut(s) 184
HaeIII GGCC 2 cut(s) 529, 771
HapII CCGG 3 cut(s) 33, 136, 195
HgaI GACGC 1 cut(s) 100
HhaI GCGC 1 cut(s) 183
Hin1II CATG 3 cut(s) 491, 832, 856
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HincII GTYRAC 1 cut(s) 826
HindII GTYRAC 1 cut(s) 826
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 7 cut(s) 277, 309, 384, 398, 476, 677, 929
HpaII CCGG 3 cut(s) 33, 136, 195
HphI GGTGA 3 cut(s) 199, 406, 672
Hpy166II GTNNAC 5 cut(s) 115, 402, 453, 635, 826
Hpy188I TCNGA 7 cut(s) 18, 75, 129, 291, 351, 503, 962
Hpy188III TCNNGA 3 cut(s) 249, 281, 388
Hpy8I GTNNAC 5 cut(s) 115, 402, 453, 635, 826
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 1 cut(s) 547
HpyCH4III ACNGT 3 cut(s) 328, 820, 835
HpyCH4IV ACGT 1 cut(s) 755
HpyCH4V TGCA 5 cut(s) 335, 381, 491, 551, 702
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 180
HpyF3I CTNAG 4 cut(s) 177, 567, 873, 927
HpySE526I ACGT 1 cut(s) 755
Hsp92II CATG 3 cut(s) 491, 832, 856
HspAI GCGC 1 cut(s) 181
KroI GCCGGC 1 cut(s) 32
KroNI GCCGGC 1 cut(s) 34
Kzo9I GATC 7 cut(s) 241, 283, 346, 370, 445, 733, 808
LguI GCTCTTC 1 cut(s) 73
LmnI GCTCC 4 cut(s) 30, 130, 271, 299
Lsp1109I GCAGC 1 cut(s) 183
LweI GCATC 1 cut(s) 634
MaeI CTAG 3 cut(s) 41, 612, 696
MaeII ACGT 1 cut(s) 755
MaeIII GTNAC 1 cut(s) 876
MalI GATC 7 cut(s) 243, 285, 348, 372, 447, 735, 810
MbiI CCGCTC 4 cut(s) 66, 125, 302, 958
MboI GATC 7 cut(s) 241, 283, 346, 370, 445, 733, 808
MboII GAAGA 8 cut(s) 60, 87, 90, 278, 490, 682, 908, 920
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 1 cut(s) 733
MhlI GDGCHC 1 cut(s) 710
MluCI AATT 2 cut(s) 266, 336
MlyI GAGTC 3 cut(s) 318, 407, 938
MmeI TCCRAC 2 cut(s) 41, 286
MreI CGCCGGCG 1 cut(s) 32
MroNI GCCGGC 1 cut(s) 32
MseI TTAA 2 cut(s) 510, 797
MspI CCGG 3 cut(s) 33, 136, 195
MspR9I CCNGG 2 cut(s) 136, 525
MunI CAATTG 1 cut(s) 336
MvaI CCWGG 1 cut(s) 525
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 2 cut(s) 63, 180
NaeI GCCGGC 1 cut(s) 34
NciI CCSGG 1 cut(s) 136
NdeII GATC 7 cut(s) 241, 283, 346, 370, 445, 733, 808
NgoMIV GCCGGC 1 cut(s) 32
NlaIII CATG 3 cut(s) 491, 832, 856
NlaIV GGNNCC 5 cut(s) 77, 143, 273, 735, 870
PciSI GCTCTTC 1 cut(s) 73
PdiI GCCGGC 1 cut(s) 34
PfeI GAWTC 4 cut(s) 277, 384, 476, 677
PkrI GCNGC 3 cut(s) 110, 124, 173
PleI GAGTC 3 cut(s) 317, 406, 937
PpsI GAGTC 3 cut(s) 317, 406, 937
Ppu21I YACGTR 1 cut(s) 756
PpuMI RGGWCCY 1 cut(s) 869
Psp5II RGGWCCY 1 cut(s) 869
Psp6I CCWGG 1 cut(s) 523
PspGI CCWGG 1 cut(s) 523
PspN4I GGNNCC 5 cut(s) 77, 143, 273, 735, 870
PspPI GGNCC 4 cut(s) 197, 527, 769, 869
PspPPI RGGWCCY 1 cut(s) 869
PsuI RGATCY 1 cut(s) 733
SapI GCTCTTC 1 cut(s) 73
SaqAI TTAA 2 cut(s) 510, 797
SatI GCNGC 3 cut(s) 109, 123, 172
Sau3AI GATC 7 cut(s) 241, 283, 346, 370, 445, 733, 808
Sau96I GGNCC 4 cut(s) 197, 527, 769, 869
SchI GAGTC 3 cut(s) 318, 407, 938
ScrFI CCNGG 2 cut(s) 136, 525
SduI GDGCHC 1 cut(s) 710
SfaNI GCATC 1 cut(s) 634
SgrAI CRCCGGYG 1 cut(s) 32
SinI GGWCC 2 cut(s) 197, 869
SnaBI TACGTA 1 cut(s) 756
SpeI ACTAGT 1 cut(s) 695
Sse9I AATT 2 cut(s) 266, 336
SsiI CCGC 6 cut(s) 64, 109, 123, 139, 302, 956
SspMI CTAG 3 cut(s) 41, 612, 696
StyD4I CCNGG 2 cut(s) 134, 523
StyI CCWWGG 2 cut(s) 210, 555
TaaI ACNGT 3 cut(s) 328, 820, 835
TaiI ACGT 1 cut(s) 758
TaqI TCGA 2 cut(s) 396, 815
TaqII GACCGA 1 cut(s) 922
TasI AATT 2 cut(s) 266, 336
TauI GCSGC 2 cut(s) 111, 125
TfiI GAWTC 4 cut(s) 277, 384, 476, 677
Tru1I TTAA 2 cut(s) 510, 797
Tru9I TTAA 2 cut(s) 510, 797
TscAI CASTG 3 cut(s) 331, 578, 887
TseI GCWGC 1 cut(s) 171
TspDTI ATGAA 3 cut(s) 529, 921, 933
TspRI CASTG 3 cut(s) 331, 578, 887
VpaK11BI GGWCC 2 cut(s) 197, 869
XmiI GTMKAC 3 cut(s) 114, 401, 634
XspI CTAG 3 cut(s) 41, 612, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.