Prupe.3G306300_v2.0.a1

yrdC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0015282
Physical Location & Seq
Forward (+)
26791594 .. 26793886
2293 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G306300.1

Sequence Viewer

Length: 960 bp
ATGTCCACGTGCTGCATCTCCTATATACGGCGCCGTTTCGCCCGAAGAACCCGGAAGTTTCTTATCCAGACGAAAGTTTACAGTGGCGACTTAGCTTCGTCTTCCAGCTTTTCGCGGTCTTTGGCAGCAGCGCCTGGAACTCTTGGCCTTCATTCAATTTCAAATGCAAGCCGCCGTGTATGCTGTGACGCTCCAAAACGCCGGCGTTTCCAAGTGTTAGCTCTCGCTGTCAAGCGGAGCCCCAAGCGTCTCAAATACGCCACTCCTCGCTTCACCAAGGAGGATGAACTGCTTTACGTTGAAGTTGATCCATCACTATCAGGAGCGGACAGCTGGAAATTGGAACCAGTTGTTCATCTTTTGAAACAGGGCGGTGTTGGTGTTATTCCTACTGACACTGTGTATGCAATAGTTTGTGATCTCAGAAACCACTCAGCCATTGAACGCCTTCGTAGAATCAAGAACCCCCTTAGCATCTTATGCCACTCCTTCCACGACATTGATACGTTTACAACAGGGTTCCCTCGTGGCGATGGCCAAGGTCATGCAAATTTATTCCGCGCTGTTAAGCATTGCTTACCTGGCCCTTATACTTTCATCTTAACTGCAACCAAAGAACTGCCTAAACATTGTATAAGGTACGGGACGGCAGATGCCAAATACACTTTAAGGAAAAATGTCGGTGTTCGCATGCCTGATGAACCCATATGTCAAGCAATACTGGAGAAGATGGGTTCACCATTGATATCCACAAGTGTCAAGTGCCCGAAGGAGAATGAGTGGCTGTTAGATCCTGTCGTTATAGCTGATATATATGGACCTGAGGGCCTTGATTTTGTCGTTGATGGTGGGGTGAGAGTGGCTGATCCATCAACCGTAGTTGACATGACAGTGATCCCTCCCAAACTCATACGACAAGGAAAGGGACCCAAATTACACTGGATGGTTGCAGAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sua5_yciO_yrdC

Protein Analysis

320

Amino Acids

35.47

Weight (kDa)

9.51

Isoelectric Point (pI)

49.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015282)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01920 AT3G01920
fragaria_vesca FvH4_6g53521
malus_domestica MD09G1010800.v1.1
prunus_persica Prupe.3G306300_v2.0.a1
pyrus_communis pycom111g00900
rosa_chinensis RchiOBHm_Chr2g0175561
rosa_laevigata RLG00000022339
rosa_multiflora Rmu_sc0013970.1_g000004
rosa_roxburghii Rroxscaffold_2G00077220
rosa_rugosa Rorug02G0586500
rosa_samantha Rh2AG665400 Rh2BG676200 Rh2CG639400 Rh2DG690200
rosa_wichuraiana Rw2G054550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 30
AccBSI CCGCTC 1 cut(s) 326
AccII CGCG 2 cut(s) 115, 561
AciI CCGC 6 cut(s) 115, 172, 235, 326, 372, 559
AclWI GGATC 4 cut(s) 302, 785, 860, 889
AcoI YGGCCR 1 cut(s) 535
AcsI RAATTY 1 cut(s) 550
AcvI CACGTG 1 cut(s) 9
AcyI GRCGYC 1 cut(s) 31
AfaI GTAC 1 cut(s) 641
AfiI CCNNNNNNNGG 1 cut(s) 27
AgsI TTSAA 5 cut(s) 156, 162, 302, 364, 443
AjnI CCWGG 2 cut(s) 133, 580
AluBI AGCT 5 cut(s) 95, 108, 221, 333, 806
AluI AGCT 5 cut(s) 95, 108, 221, 333, 806
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 4 cut(s) 302, 785, 860, 889
AlwNI CAGNNNCTG 1 cut(s) 134
AoxI GGCC 4 cut(s) 145, 535, 583, 826
ApeKI GCWGC 3 cut(s) 12, 125, 128
ApoI RAATTY 1 cut(s) 550
Asp700I GAANNNNTTC 1 cut(s) 447
AspLEI GCGC 3 cut(s) 33, 133, 563
AspS9I GGNCC 4 cut(s) 584, 818, 826, 926
AsuC2I CCSGG 1 cut(s) 52
AsuHPI GGTGA 3 cut(s) 265, 729, 865
AvaII GGWCC 2 cut(s) 818, 926
AxyI CCTNAGG 1 cut(s) 822
BaeGI GKGCMC 1 cut(s) 767
BalI TGGCCA 1 cut(s) 537
BanI GGYRCC 1 cut(s) 30
BanII GRGCYC 1 cut(s) 242
BauI CACGAG 1 cut(s) 525
BbrPI CACGTG 1 cut(s) 9
BbsI GAAGAC 1 cut(s) 93
BbvI GCAGC 2 cut(s) 137, 140
BccI CCATC 6 cut(s) 319, 527, 724, 839, 877, 937
BceAI ACGGC 4 cut(s) 18, 44, 159, 663
BciT130I CCWGG 2 cut(s) 135, 582
BcnI CCSGG 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 254
BfoI RGCGCY 2 cut(s) 34, 134
BisI GCNGC 4 cut(s) 13, 126, 129, 172
BlsI GCNGC 4 cut(s) 14, 127, 130, 173
Bme1390I CCNGG 3 cut(s) 52, 135, 582
Bme18I GGWCC 2 cut(s) 818, 926
BmgT120I GGNCC 4 cut(s) 584, 818, 826, 926
BmiI GGNNCC 6 cut(s) 32, 239, 345, 521, 927, 928
BmrFI CCNGG 3 cut(s) 52, 135, 582
BmsI GCATC 3 cut(s) 24, 483, 643
BpiI GAAGAC 1 cut(s) 93
BpmI CTGGAG 1 cut(s) 743
Bpu10I CCTNAGC 1 cut(s) 470
BpuMI CCSGG 1 cut(s) 52
BsaAI YACGTR 1 cut(s) 9
BsaHI GRCGYC 1 cut(s) 31
BsaJI CCNNGG 2 cut(s) 276, 538
BsaXI ACNNNNNCTCC 2 cut(s) 764, 794
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse118I RCCGGY 1 cut(s) 201
Bse1I ACTGG 3 cut(s) 347, 726, 944
Bse21I CCTNAGG 1 cut(s) 822
Bse3DI GCAATG 1 cut(s) 571
BseBI CCWGG 2 cut(s) 135, 582
BseDI CCNNGG 2 cut(s) 276, 538
BseGI GGATG 2 cut(s) 289, 948
BseLI CCNNNNNNNGG 1 cut(s) 27
BseMI GCAATG 1 cut(s) 571
BseMII CTCAG 3 cut(s) 436, 447, 813
BseNI ACTGG 3 cut(s) 347, 726, 944
BseRI GAGGAG 1 cut(s) 255
BseSI GKGCMC 1 cut(s) 767
BseXI GCAGC 2 cut(s) 137, 140
Bsh1236I CGCG 2 cut(s) 115, 561
BshFI GGCC 4 cut(s) 147, 537, 585, 828
BshNI GGYRCC 1 cut(s) 30
BsiSI CCGG 2 cut(s) 52, 202
BslFI GGGAC 2 cut(s) 658, 939
BslI CCNNNNNNNGG 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 254
BsmBI CGTCTC 1 cut(s) 254
BsmFI GGGAC 2 cut(s) 658, 939
BsnI GGCC 4 cut(s) 147, 537, 585, 828
Bsp1286I GDGCHC 2 cut(s) 242, 767
Bsp143I GATC 5 cut(s) 307, 418, 790, 865, 894
BspACI CCGC 6 cut(s) 115, 172, 235, 326, 372, 559
BspANI GGCC 4 cut(s) 147, 537, 585, 828
BspCNI CTCAG 3 cut(s) 435, 446, 814
BspFNI CGCG 2 cut(s) 115, 561
BspLI GGNNCC 6 cut(s) 32, 239, 345, 521, 927, 928
BspPI GGATC 4 cut(s) 302, 785, 860, 889
BspT107I GGYRCC 1 cut(s) 30
BsrBI CCGCTC 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 571
BsrFI RCCGGY 1 cut(s) 201
BsrI ACTGG 3 cut(s) 347, 726, 944
BssAI RCCGGY 1 cut(s) 201
BssECI CCNNGG 2 cut(s) 276, 538
BssMI GATC 5 cut(s) 307, 418, 790, 865, 894
BssNI GRCGYC 1 cut(s) 31
BssSI CACGAG 1 cut(s) 525
BssT1I CCWWGG 2 cut(s) 276, 538
Bst2BI CACGAG 1 cut(s) 525
Bst2UI CCWGG 2 cut(s) 135, 582
Bst4CI ACNGT 4 cut(s) 83, 400, 877, 892
BstACI GRCGYC 1 cut(s) 31
BstAPI GCANNNNNTGC 1 cut(s) 480
BstBAI YACGTR 1 cut(s) 9
BstC8I GCNNGC 3 cut(s) 169, 203, 692
BstDEI CTNAG 5 cut(s) 91, 422, 433, 470, 822
BstF5I GGATG 2 cut(s) 289, 948
BstFNI CGCG 2 cut(s) 115, 561
BstH2I RGCGCY 2 cut(s) 34, 134
BstHHI GCGC 3 cut(s) 33, 133, 563
BstKTI GATC 5 cut(s) 310, 421, 793, 868, 897
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 5 cut(s) 307, 418, 790, 865, 894
BstMWI GCNNNNNNNGC 3 cut(s) 180, 480, 582
BstNI CCWGG 2 cut(s) 135, 582
BstNSI RCATGY 1 cut(s) 694
BstSCI CCNGG 3 cut(s) 50, 133, 580
BstSLI GKGCMC 1 cut(s) 767
BstUI CGCG 2 cut(s) 115, 561
BstV1I GCAGC 2 cut(s) 137, 140
BstV2I GAAGAC 1 cut(s) 93
BstX2I RGATCY 1 cut(s) 790
BstYI RGATCY 1 cut(s) 790
Bsu36I CCTNAGG 1 cut(s) 822
BsuRI GGCC 4 cut(s) 147, 537, 585, 828
BtgZI GCGATG 1 cut(s) 546
BtsCI GGATG 2 cut(s) 289, 948
BtsIMutI CAGTG 4 cut(s) 88, 396, 897, 937
Cac8I GCNNGC 3 cut(s) 169, 203, 692
CaiI CAGNNNCTG 1 cut(s) 134
CfoI GCGC 3 cut(s) 33, 133, 563
Cfr10I RCCGGY 1 cut(s) 201
Cfr13I GGNCC 4 cut(s) 584, 818, 826, 926
CseI GACGC 2 cut(s) 197, 236
Csp6I GTAC 1 cut(s) 640
CviAII CATG 3 cut(s) 545, 691, 886
CviQI GTAC 1 cut(s) 640
DdeI CTNAG 5 cut(s) 91, 422, 433, 470, 822
DinI GGCGCC 1 cut(s) 32
DpnI GATC 5 cut(s) 309, 420, 792, 867, 896
DpnII GATC 5 cut(s) 307, 418, 790, 865, 894
EaeI YGGCCR 1 cut(s) 535
Eco130I CCWWGG 2 cut(s) 276, 538
Eco24I GRGCYC 1 cut(s) 242
Eco32I GATATC 1 cut(s) 747
Eco47I GGWCC 2 cut(s) 818, 926
Eco72I CACGTG 1 cut(s) 9
Eco81I CCTNAGG 1 cut(s) 822
EcoO109I RGGNCCY 2 cut(s) 826, 926
EcoRII CCWGG 2 cut(s) 133, 580
EcoRV GATATC 1 cut(s) 747
EcoT14I CCWWGG 2 cut(s) 276, 538
EcoT38I GRGCYC 1 cut(s) 242
EgeI GGCGCC 1 cut(s) 32
EheI GGCGCC 1 cut(s) 32
ErhI CCWWGG 2 cut(s) 276, 538
Esp3I CGTCTC 1 cut(s) 254
FaeI CATG 3 cut(s) 548, 694, 889
FalI AAGNNNNNCTT 2 cut(s) 560, 592
FaqI GGGAC 2 cut(s) 658, 939
FatI CATG 3 cut(s) 544, 690, 885
FauNDI CATATG 1 cut(s) 707
Fnu4HI GCNGC 4 cut(s) 13, 126, 129, 172
FokI GGATG 2 cut(s) 296, 955
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 4 cut(s) 13, 126, 129, 172
GlaI GCGC 3 cut(s) 32, 132, 562
GluI GCNGC 4 cut(s) 13, 126, 129, 172
GsuI CTGGAG 1 cut(s) 743
HaeII RGCGCY 2 cut(s) 34, 134
HaeIII GGCC 4 cut(s) 147, 537, 585, 828
HapII CCGG 2 cut(s) 52, 202
HgaI GACGC 2 cut(s) 197, 236
HhaI GCGC 3 cut(s) 33, 133, 563
Hin1I GRCGYC 1 cut(s) 31
Hin1II CATG 3 cut(s) 548, 694, 889
Hin6I GCGC 3 cut(s) 31, 131, 561
HinP1I GCGC 3 cut(s) 31, 131, 561
HincII GTYRAC 1 cut(s) 883
HindII GTYRAC 1 cut(s) 883
HinfI GANTC 1 cut(s) 456
HpaII CCGG 2 cut(s) 52, 202
HphI GGTGA 3 cut(s) 265, 729, 865
Hpy166II GTNNAC 5 cut(s) 6, 79, 510, 737, 883
Hpy188I TCNGA 1 cut(s) 425
Hpy188III TCNNGA 3 cut(s) 67, 321, 460
Hpy8I GTNNAC 5 cut(s) 6, 79, 510, 737, 883
HpyAV CCTTC 4 cut(s) 158, 458, 499, 763
HpyCH4III ACNGT 4 cut(s) 83, 400, 877, 892
HpyCH4IV ACGT 3 cut(s) 8, 297, 506
HpyCH4V TGCA 6 cut(s) 15, 167, 407, 548, 608, 950
HpyF10VI GCNNNNNNNGC 3 cut(s) 180, 480, 582
HpyF3I CTNAG 5 cut(s) 91, 422, 433, 470, 822
HpySE526I ACGT 3 cut(s) 8, 297, 506
Hsp92I GRCGYC 1 cut(s) 31
Hsp92II CATG 3 cut(s) 548, 694, 889
HspAI GCGC 3 cut(s) 31, 131, 561
KasI GGCGCC 1 cut(s) 30
KflI GGGWCCC 1 cut(s) 926
KroI GCCGGC 1 cut(s) 201
KroNI GCCGGC 1 cut(s) 203
Kzo9I GATC 5 cut(s) 307, 418, 790, 865, 894
LmnI GCTCC 3 cut(s) 196, 237, 323
Lsp1109I GCAGC 2 cut(s) 137, 140
LweI GCATC 3 cut(s) 24, 483, 643
MaeII ACGT 3 cut(s) 8, 297, 506
MaeIII GTNAC 1 cut(s) 185
MalI GATC 5 cut(s) 309, 420, 792, 867, 896
MbiI CCGCTC 1 cut(s) 326
MboI GATC 5 cut(s) 307, 418, 790, 865, 894
MboII GAAGA 3 cut(s) 57, 93, 739
MflI RGATCY 1 cut(s) 790
MhlI GDGCHC 2 cut(s) 242, 767
MlsI TGGCCA 1 cut(s) 537
MluCI AATT 4 cut(s) 156, 338, 550, 932
MluNI TGGCCA 1 cut(s) 537
Mly113I GGCGCC 1 cut(s) 31
MnlI CCTC 5 cut(s) 274, 276, 534, 817, 909
Mox20I TGGCCA 1 cut(s) 537
MreI CGCCGGCG 1 cut(s) 201
MroNI GCCGGC 1 cut(s) 201
MroXI GAANNNNTTC 1 cut(s) 447
MscI TGGCCA 1 cut(s) 537
MseI TTAA 3 cut(s) 567, 602, 668
MslI CAYNNNNRTG 1 cut(s) 890
Msp20I TGGCCA 1 cut(s) 537
MspA1I CMGCKG 1 cut(s) 333
MspI CCGG 2 cut(s) 52, 202
MspR9I CCNGG 3 cut(s) 52, 135, 582
MvaI CCWGG 2 cut(s) 135, 582
MvnI CGCG 2 cut(s) 115, 561
MwoI GCNNNNNNNGC 3 cut(s) 180, 480, 582
NaeI GCCGGC 1 cut(s) 203
NarI GGCGCC 1 cut(s) 31
NciI CCSGG 1 cut(s) 52
NdeI CATATG 1 cut(s) 707
NdeII GATC 5 cut(s) 307, 418, 790, 865, 894
NgoMIV GCCGGC 1 cut(s) 201
NlaIII CATG 3 cut(s) 548, 694, 889
NlaIV GGNNCC 6 cut(s) 32, 239, 345, 521, 927, 928
NmuCI GTSAC 1 cut(s) 185
NspI RCATGY 1 cut(s) 694
PaeI GCATGC 1 cut(s) 694
PdiI GCCGGC 1 cut(s) 203
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 1 cut(s) 456
PkrI GCNGC 4 cut(s) 14, 127, 130, 173
PluTI GGCGCC 1 cut(s) 34
PmaCI CACGTG 1 cut(s) 9
PmlI CACGTG 1 cut(s) 9
Ppu21I YACGTR 1 cut(s) 9
PpuMI RGGWCCY 1 cut(s) 926
Psp5II RGGWCCY 1 cut(s) 926
Psp6I CCWGG 2 cut(s) 133, 580
PspCI CACGTG 1 cut(s) 9
PspGI CCWGG 2 cut(s) 133, 580
PspN4I GGNNCC 6 cut(s) 32, 239, 345, 521, 927, 928
PspPI GGNCC 4 cut(s) 584, 818, 826, 926
PspPPI RGGWCCY 1 cut(s) 926
PstNI CAGNNNCTG 1 cut(s) 134
PsuI RGATCY 1 cut(s) 790
PvuII CAGCTG 1 cut(s) 333
RsaI GTAC 1 cut(s) 641
RsaNI GTAC 1 cut(s) 640
RseI CAYNNNNRTG 1 cut(s) 890
SaqAI TTAA 3 cut(s) 567, 602, 668
SatI GCNGC 4 cut(s) 13, 126, 129, 172
Sau3AI GATC 5 cut(s) 307, 418, 790, 865, 894
Sau96I GGNCC 4 cut(s) 584, 818, 826, 926
ScrFI CCNGG 3 cut(s) 52, 135, 582
SduI GDGCHC 2 cut(s) 242, 767
SfaNI GCATC 3 cut(s) 24, 483, 643
SfoI GGCGCC 1 cut(s) 32
SgrAI CRCCGGYG 1 cut(s) 201
SinI GGWCC 2 cut(s) 818, 926
SmiMI CAYNNNNRTG 1 cut(s) 890
SphI GCATGC 1 cut(s) 694
Sse9I AATT 4 cut(s) 156, 338, 550, 932
SsiI CCGC 6 cut(s) 115, 172, 235, 326, 372, 559
SspDI GGCGCC 1 cut(s) 30
StyD4I CCNGG 3 cut(s) 50, 133, 580
StyI CCWWGG 2 cut(s) 276, 538
TaaI ACNGT 4 cut(s) 83, 400, 877, 892
TaiI ACGT 3 cut(s) 11, 300, 509
TasI AATT 4 cut(s) 156, 338, 550, 932
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 1 cut(s) 456
Tru1I TTAA 3 cut(s) 567, 602, 668
Tru9I TTAA 3 cut(s) 567, 602, 668
TscAI CASTG 4 cut(s) 88, 403, 897, 944
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 3 cut(s) 12, 125, 128
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 5 cut(s) 140, 300, 344, 586, 714
TspRI CASTG 4 cut(s) 88, 403, 897, 944
VpaK11BI GGWCC 2 cut(s) 818, 926
XapI RAATTY 1 cut(s) 550
XceI RCATGY 1 cut(s) 694
XmnI GAANNNNTTC 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.