Rw2G054550

yrdC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0015282
Physical Location & Seq
Forward (+)
82149675 .. 82151921
2247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G054550.1

Sequence Viewer

Length: 930 bp
ATGGCAATGGCTTCTCGTCCAAAACTCTACGCCGGCGACTTAGCTTCATCTTTCAGCTTCTCCCGGTCTTTGCCAAACCCTAACCGGCGGTTCCAAGTGTTGGCTTTCGCCGTCAAGCGGAGCCCTAAGCGTCTCAAATACTCCACTCCTCGCTTCACCAAGGAGGATGAGTTACTGTATGTCGGAGTTGATCCATCAGGAGTTGATAGCTGGAAATTGGAGCCGGTCATTGATCTTCTGAAACAAGGAGCGGTTGGGGTCATTCCTACTGACACTGTGTATGCAATAGTCTGTGACCCGAGAAACCACTCAGCCATTGATCGTCTTCGTAGAATCAAGAAAATCGAGTCTACAAAGCCCCTCACCATCTTGTGTCACTCGTTCCATGACATTGATCGATTTACAACAGGCTTCCCTCGTGGTGATTCCAAAGGTCATGCAAATATCTTCCGAGCTGTTAAGCAATGCTTACCTGGGCCTTATACCTTCATCCTAACTGCAACCAAAGAACTACCTAAGCAGTGTATAGGGTTTGGGACGGCAATTGCCAAATACAAATCTAGGAAAAATGTGGGTGTTCGTATGCCTGCTGATGCCATCTGTCAAGCGATACTGGAGAAGATGGATACACCATTGATTTCCACAAGTTGCAAGTGCCCGAAGGAAAATGAGTGGATTTTGGATCCAGTTGTTATAGCTGATACATATGGACCAGAGGGCCTTGATTTTGTCATTGATGGTGGGTTAAGAGTGGCTGATCCATCAACTGTGGTTGACATGACAGTGTTTCCTCCCAAGATCATACGACAAGGAAAGGGACCTCAATTACACTGGATGGTGGCTGAAGATGACAATGAAGATGAATATGAAGATGACAATGAACCTGCTGAGACAGTGGAAAGCTCATCTCCTCAACCACTCAGAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sua5_yciO_yrdC

Protein Analysis

309

Amino Acids

34.44

Weight (kDa)

8.08

Isoelectric Point (pI)

51.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sua5_yciO_yrdC PF01300 79 - 271 5e-43 Telomere recombination
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015282)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01920 AT3G01920
fragaria_vesca FvH4_6g53521
malus_domestica MD09G1010800.v1.1
prunus_persica Prupe.3G306300_v2.0.a1
pyrus_communis pycom111g00900
rosa_chinensis RchiOBHm_Chr2g0175561
rosa_laevigata RLG00000022339
rosa_multiflora Rmu_sc0013970.1_g000004
rosa_roxburghii Rroxscaffold_2G00077220
rosa_rugosa Rorug02G0586500
rosa_samantha Rh2AG665400 Rh2BG676200 Rh2CG639400 Rh2DG690200
rosa_wichuraiana Rw2G054550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 892
AccB7I CCANNNNNTGG 1 cut(s) 100
AccBSI CCGCTC 1 cut(s) 251
AccI GTMKAC 1 cut(s) 350
AciI CCGC 3 cut(s) 88, 118, 251
AclWI GGATC 4 cut(s) 185, 677, 690, 752
AcuI CTGAAG 1 cut(s) 864
AfiI CCNNNNNNNGG 2 cut(s) 100, 117
AjnI CCWGG 1 cut(s) 472
AluBI AGCT 6 cut(s) 44, 57, 210, 455, 698, 903
AluI AGCT 6 cut(s) 44, 57, 210, 455, 698, 903
Alw26I GTCTC 2 cut(s) 137, 884
AlwI GGATC 4 cut(s) 185, 677, 690, 752
Ama87I CYCGRG 1 cut(s) 298
AoxI GGCC 2 cut(s) 476, 718
AspS9I GGNCC 4 cut(s) 476, 710, 718, 818
AsuC2I CCSGG 1 cut(s) 64
AsuHPI GGTGA 3 cut(s) 148, 355, 434
AvaI CYCGRG 1 cut(s) 298
AvaII GGWCC 2 cut(s) 710, 818
BaeGI GKGCMC 1 cut(s) 659
BamHI GGATCC 1 cut(s) 682
BanII GRGCYC 1 cut(s) 125
BauI CACGAG 1 cut(s) 417
BbsI GAAGAC 1 cut(s) 317
BccI CCATC 7 cut(s) 202, 374, 605, 616, 731, 769, 829
BceAI ACGGC 2 cut(s) 95, 555
BciT130I CCWGG 1 cut(s) 474
BciVI GTATCC 1 cut(s) 619
BcnI CCSGG 1 cut(s) 64
BcoDI GTCTC 2 cut(s) 137, 884
BfaI CTAG 1 cut(s) 561
BfuAI ACCTGC 1 cut(s) 892
BfuI GTATCC 1 cut(s) 619
Bme1390I CCNGG 2 cut(s) 64, 474
Bme18I GGWCC 2 cut(s) 710, 818
BmeT110I CYCGRG 1 cut(s) 298
BmgT120I GGNCC 4 cut(s) 476, 710, 718, 818
BmiI GGNNCC 5 cut(s) 92, 122, 222, 684, 819
BmrFI CCNGG 2 cut(s) 64, 474
BmsI GCATC 1 cut(s) 583
BpiI GAAGAC 1 cut(s) 317
BpmI CTGGAG 1 cut(s) 635
Bpu10I CCTNAGC 2 cut(s) 126, 516
BpuMI CCSGG 1 cut(s) 64
Bsa29I ATCGAT 1 cut(s) 397
BsaJI CCNNGG 2 cut(s) 159, 473
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 117
Bse118I RCCGGY 3 cut(s) 32, 84, 223
Bse1I ACTGG 3 cut(s) 618, 686, 836
Bse3DI GCAATG 2 cut(s) 12, 470
BseBI CCWGG 1 cut(s) 474
BseCI ATCGAT 1 cut(s) 397
BseDI CCNNGG 2 cut(s) 159, 473
BseGI GGATG 3 cut(s) 172, 489, 840
BseLI CCNNNNNNNGG 2 cut(s) 100, 117
BseMI GCAATG 2 cut(s) 12, 470
BseMII CTCAG 2 cut(s) 324, 879
BseNI ACTGG 3 cut(s) 618, 686, 836
BseRI GAGGAG 2 cut(s) 138, 900
BseSI GKGCMC 1 cut(s) 659
BshFI GGCC 2 cut(s) 478, 720
BshVI ATCGAT 1 cut(s) 397
BsiHKCI CYCGRG 1 cut(s) 298
BsiSI CCGG 4 cut(s) 33, 64, 85, 224
BslFI GGGAC 2 cut(s) 550, 831
BslI CCNNNNNNNGG 2 cut(s) 100, 117
BsmAI GTCTC 2 cut(s) 137, 884
BsmBI CGTCTC 1 cut(s) 137
BsmFI GGGAC 2 cut(s) 550, 831
BsnI GGCC 2 cut(s) 478, 720
BsoBI CYCGRG 1 cut(s) 298
Bsp1286I GDGCHC 2 cut(s) 125, 659
Bsp143I GATC 7 cut(s) 190, 232, 319, 394, 682, 757, 798
BspACI CCGC 3 cut(s) 88, 118, 251
BspANI GGCC 2 cut(s) 478, 720
BspCNI CTCAG 2 cut(s) 323, 880
BspDI ATCGAT 1 cut(s) 397
BspLI GGNNCC 5 cut(s) 92, 122, 222, 684, 819
BspMI ACCTGC 1 cut(s) 892
BspPI GGATC 4 cut(s) 185, 677, 690, 752
BsrBI CCGCTC 1 cut(s) 251
BsrDI GCAATG 2 cut(s) 12, 470
BsrFI RCCGGY 3 cut(s) 32, 84, 223
BsrI ACTGG 3 cut(s) 618, 686, 836
BssAI RCCGGY 3 cut(s) 32, 84, 223
BssECI CCNNGG 2 cut(s) 159, 473
BssMI GATC 7 cut(s) 190, 232, 319, 394, 682, 757, 798
BssSI CACGAG 1 cut(s) 417
BssT1I CCWWGG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 5 cut(s) 177, 277, 769, 784, 895
BstC8I GCNNGC 2 cut(s) 34, 588
BstDEI CTNAG 6 cut(s) 40, 126, 310, 516, 888, 920
BstF5I GGATG 3 cut(s) 172, 489, 840
BstKTI GATC 7 cut(s) 193, 235, 322, 397, 685, 760, 801
BstMAI GTCTC 2 cut(s) 137, 884
BstMBI GATC 7 cut(s) 190, 232, 319, 394, 682, 757, 798
BstNI CCWGG 1 cut(s) 474
BstSCI CCNGG 2 cut(s) 62, 472
BstSLI GKGCMC 1 cut(s) 659
BstV2I GAAGAC 1 cut(s) 317
BstX2I RGATCY 1 cut(s) 682
BstYI RGATCY 1 cut(s) 682
Bsu15I ATCGAT 1 cut(s) 397
BsuI GTATCC 1 cut(s) 619
BsuRI GGCC 2 cut(s) 478, 720
BsuTUI ATCGAT 1 cut(s) 397
BtsCI GGATG 3 cut(s) 172, 489, 840
BtsI GCAGTG 1 cut(s) 527
BtsIMutI CAGTG 5 cut(s) 273, 527, 789, 829, 900
BveI ACCTGC 1 cut(s) 892
Cac8I GCNNGC 2 cut(s) 34, 588
Cfr10I RCCGGY 3 cut(s) 32, 84, 223
Cfr13I GGNCC 4 cut(s) 476, 710, 718, 818
ClaI ATCGAT 1 cut(s) 397
CseI GACGC 1 cut(s) 119
CviAII CATG 3 cut(s) 386, 437, 778
DdeI CTNAG 6 cut(s) 40, 126, 310, 516, 888, 920
DpnI GATC 7 cut(s) 192, 234, 321, 396, 684, 759, 800
DpnII GATC 7 cut(s) 190, 232, 319, 394, 682, 757, 798
Eco130I CCWWGG 1 cut(s) 159
Eco24I GRGCYC 1 cut(s) 125
Eco47I GGWCC 2 cut(s) 710, 818
Eco57I CTGAAG 1 cut(s) 864
Eco88I CYCGRG 1 cut(s) 298
EcoO109I RGGNCCY 2 cut(s) 718, 818
EcoRII CCWGG 1 cut(s) 472
EcoT14I CCWWGG 1 cut(s) 159
EcoT38I GRGCYC 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 159
Esp3I CGTCTC 1 cut(s) 137
FaeI CATG 3 cut(s) 389, 440, 781
FalI AAGNNNNNCTT 2 cut(s) 452, 484
FaqI GGGAC 2 cut(s) 550, 831
FatI CATG 3 cut(s) 385, 436, 777
FauNDI CATATG 1 cut(s) 706
FblI GTMKAC 1 cut(s) 350
FokI GGATG 3 cut(s) 179, 476, 847
FriOI GRGCYC 1 cut(s) 125
FspBI CTAG 1 cut(s) 561
GsuI CTGGAG 1 cut(s) 635
HaeIII GGCC 2 cut(s) 478, 720
HapII CCGG 4 cut(s) 33, 64, 85, 224
HgaI GACGC 1 cut(s) 119
Hin1II CATG 3 cut(s) 389, 440, 781
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HinfI GANTC 3 cut(s) 333, 347, 425
HpaII CCGG 4 cut(s) 33, 64, 85, 224
HphI GGTGA 3 cut(s) 148, 355, 434
Hpy166II GTNNAC 2 cut(s) 351, 775
Hpy188I TCNGA 4 cut(s) 185, 240, 452, 923
Hpy188III TCNNGA 2 cut(s) 198, 337
Hpy8I GTNNAC 2 cut(s) 351, 775
HpyAV CCTTC 2 cut(s) 496, 655
HpyCH4III ACNGT 5 cut(s) 177, 277, 769, 784, 895
HpyCH4V TGCA 4 cut(s) 284, 440, 500, 651
HpyF3I CTNAG 6 cut(s) 40, 126, 310, 516, 888, 920
Hsp92II CATG 3 cut(s) 389, 440, 781
KroI GCCGGC 1 cut(s) 32
KroNI GCCGGC 1 cut(s) 34
Kzo9I GATC 7 cut(s) 190, 232, 319, 394, 682, 757, 798
LmnI GCTCC 3 cut(s) 120, 220, 248
LweI GCATC 1 cut(s) 583
MaeI CTAG 1 cut(s) 561
MaeIII GTNAC 3 cut(s) 171, 293, 374
MalI GATC 7 cut(s) 192, 234, 321, 396, 684, 759, 800
MbiI CCGCTC 1 cut(s) 251
MboI GATC 7 cut(s) 190, 232, 319, 394, 682, 757, 798
MboII GAAGA 7 cut(s) 227, 317, 439, 631, 857, 869, 881
MfeI CAATTG 1 cut(s) 543
MflI RGATCY 1 cut(s) 682
MhlI GDGCHC 2 cut(s) 125, 659
MluCI AATT 3 cut(s) 215, 543, 824
MlyI GAGTC 1 cut(s) 356
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 8 cut(s) 157, 159, 371, 426, 709, 801, 831, 921
MreI CGCCGGCG 1 cut(s) 32
MroNI GCCGGC 1 cut(s) 32
MseI TTAA 2 cut(s) 459, 746
MslI CAYNNNNRTG 1 cut(s) 782
MspI CCGG 4 cut(s) 33, 64, 85, 224
MspR9I CCNGG 2 cut(s) 64, 474
MunI CAATTG 1 cut(s) 543
MvaI CCWGG 1 cut(s) 474
NaeI GCCGGC 1 cut(s) 34
NciI CCSGG 1 cut(s) 64
NdeI CATATG 1 cut(s) 706
NdeII GATC 7 cut(s) 190, 232, 319, 394, 682, 757, 798
NgoMIV GCCGGC 1 cut(s) 32
NlaIII CATG 3 cut(s) 389, 440, 781
NlaIV GGNNCC 5 cut(s) 92, 122, 222, 684, 819
NmuCI GTSAC 2 cut(s) 293, 374
PdiI GCCGGC 1 cut(s) 34
PfeI GAWTC 2 cut(s) 333, 425
PflMI CCANNNNNTGG 1 cut(s) 100
PleI GAGTC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 355
PpuMI RGGWCCY 1 cut(s) 818
Psp5II RGGWCCY 1 cut(s) 818
Psp6I CCWGG 1 cut(s) 472
PspGI CCWGG 1 cut(s) 472
PspN4I GGNNCC 5 cut(s) 92, 122, 222, 684, 819
PspPI GGNCC 4 cut(s) 476, 710, 718, 818
PspPPI RGGWCCY 1 cut(s) 818
PsuI RGATCY 1 cut(s) 682
RseI CAYNNNNRTG 1 cut(s) 782
SaqAI TTAA 2 cut(s) 459, 746
Sau3AI GATC 7 cut(s) 190, 232, 319, 394, 682, 757, 798
Sau96I GGNCC 4 cut(s) 476, 710, 718, 818
SchI GAGTC 1 cut(s) 356
ScrFI CCNGG 2 cut(s) 64, 474
SduI GDGCHC 2 cut(s) 125, 659
SfaNI GCATC 1 cut(s) 583
SgrAI CRCCGGYG 1 cut(s) 32
SinI GGWCC 2 cut(s) 710, 818
SmiMI CAYNNNNRTG 1 cut(s) 782
Sse9I AATT 3 cut(s) 215, 543, 824
SsiI CCGC 3 cut(s) 88, 118, 251
SspMI CTAG 1 cut(s) 561
StyD4I CCNGG 2 cut(s) 62, 472
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 5 cut(s) 177, 277, 769, 784, 895
TaqI TCGA 2 cut(s) 345, 397
TasI AATT 3 cut(s) 215, 543, 824
TfiI GAWTC 2 cut(s) 333, 425
Tru1I TTAA 2 cut(s) 459, 746
Tru9I TTAA 2 cut(s) 459, 746
TscAI CASTG 5 cut(s) 280, 527, 789, 836, 900
TseFI GTSAC 2 cut(s) 293, 374
Tsp45I GTSAC 2 cut(s) 293, 374
TspDTI ATGAA 6 cut(s) 36, 478, 870, 876, 882, 894
TspRI CASTG 5 cut(s) 280, 527, 789, 836, 900
Van91I CCANNNNNTGG 1 cut(s) 100
VpaK11BI GGWCC 2 cut(s) 710, 818
XmiI GTMKAC 1 cut(s) 350
XspI CTAG 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.