Rh2BG676200

yrdC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0015282
Physical Location & Seq
Forward (+)
88734731 .. 88736356
1626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG676200.1

Sequence Viewer

Length: 624 bp
ATGTGGTTAATGTTGTCGTATTGCAGAATCAAGAAAATCGAGTCTACAAAGCCCCTCACCATCTTGTGTCACTCGTTCCATGACATTGATCGATTTACAACAGGCTTCCCTCGTGGTGATTCCAAAGGTCATGCAAATATCTTCCGAGCTGTTAAGCAATGCTTACCTGGGCCTTATACCTTCATCCTAACTGCAACCAAAGAACTACCTAAGCAGTGTATAGGGTTTGGGACGGCAATTGCCAAATACAAATCTAGGAAAAATGTGGGTGTTCGTATGCCTGCTGATGCCATCTGTCAAGCGATACTGGAGAAGATGGATACACCATTGATTTCCACAAGTTGCAAGTGCCCAAAGGAAAATGAGTGGATTTTGGATCCAGTTGTTATAGCTGATACATATGGACCAGAGGGCCTTGATTTTGTCATTGATGATGGGTTAAGAGTGGCTGATCCATCAACTGTGGTTGACATGACAATGTTTCCTCCCAAGATCATACGACAAGGAAAGGGACCTCAATTACACTGGATGGTGGCTGAAGATGACAAGGAAGATGAATATGAAGATGACAATGAACCTGCTGAGACAGTGGAAAGCTCATCTCCTCAACCACTCAGAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sua5_yciO_yrdC

Protein Analysis

207

Amino Acids

23.28

Weight (kDa)

5.62

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sua5_yciO_yrdC PF01300 9 - 169 1e-26 Telomere recombination
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015282)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01920 AT3G01920
fragaria_vesca FvH4_6g53521
malus_domestica MD09G1010800.v1.1
prunus_persica Prupe.3G306300_v2.0.a1
pyrus_communis pycom111g00900
rosa_chinensis RchiOBHm_Chr2g0175561
rosa_laevigata RLG00000022339
rosa_multiflora Rmu_sc0013970.1_g000004
rosa_roxburghii Rroxscaffold_2G00077220
rosa_rugosa Rorug02G0586500
rosa_samantha Rh2AG665400 Rh2BG676200 Rh2CG639400 Rh2DG690200
rosa_wichuraiana Rw2G054550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 586
AccI GTMKAC 1 cut(s) 44
AclWI GGATC 3 cut(s) 371, 384, 446
AcuI CTGAAG 1 cut(s) 558
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 3 cut(s) 149, 392, 597
AluI AGCT 3 cut(s) 149, 392, 597
Alw26I GTCTC 1 cut(s) 578
AlwI GGATC 3 cut(s) 371, 384, 446
AoxI GGCC 2 cut(s) 170, 412
AspS9I GGNCC 4 cut(s) 170, 404, 412, 512
AsuHPI GGTGA 2 cut(s) 49, 128
AvaII GGWCC 2 cut(s) 404, 512
BaeGI GKGCMC 1 cut(s) 353
BamHI GGATCC 1 cut(s) 376
BauI CACGAG 1 cut(s) 111
BccI CCATC 6 cut(s) 68, 299, 310, 428, 463, 523
BceAI ACGGC 1 cut(s) 249
BciT130I CCWGG 1 cut(s) 168
BciVI GTATCC 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 578
BfaI CTAG 1 cut(s) 255
BfuAI ACCTGC 1 cut(s) 586
BfuI GTATCC 1 cut(s) 313
Bme1390I CCNGG 1 cut(s) 168
Bme18I GGWCC 2 cut(s) 404, 512
BmgT120I GGNCC 4 cut(s) 170, 404, 412, 512
BmiI GGNNCC 2 cut(s) 378, 513
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 277
BpmI CTGGAG 1 cut(s) 329
Bpu10I CCTNAGC 1 cut(s) 210
Bsa29I ATCGAT 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 167
Bse1I ACTGG 3 cut(s) 312, 380, 530
Bse3DI GCAATG 1 cut(s) 164
BseBI CCWGG 1 cut(s) 168
BseCI ATCGAT 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 2 cut(s) 183, 534
BseMI GCAATG 1 cut(s) 164
BseMII CTCAG 1 cut(s) 573
BseNI ACTGG 3 cut(s) 312, 380, 530
BseRI GAGGAG 1 cut(s) 594
BseSI GKGCMC 1 cut(s) 353
BshFI GGCC 2 cut(s) 172, 414
BshVI ATCGAT 1 cut(s) 91
BslFI GGGAC 2 cut(s) 244, 525
BsmAI GTCTC 1 cut(s) 578
BsmFI GGGAC 2 cut(s) 244, 525
BsnI GGCC 2 cut(s) 172, 414
Bsp1286I GDGCHC 1 cut(s) 353
Bsp143I GATC 4 cut(s) 88, 376, 451, 492
BspANI GGCC 2 cut(s) 172, 414
BspCNI CTCAG 1 cut(s) 574
BspDI ATCGAT 1 cut(s) 91
BspLI GGNNCC 2 cut(s) 378, 513
BspMI ACCTGC 1 cut(s) 586
BspPI GGATC 3 cut(s) 371, 384, 446
BsrDI GCAATG 1 cut(s) 164
BsrI ACTGG 3 cut(s) 312, 380, 530
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 4 cut(s) 88, 376, 451, 492
BssSI CACGAG 1 cut(s) 111
Bst2BI CACGAG 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 2 cut(s) 463, 589
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 3 cut(s) 210, 582, 614
BstF5I GGATG 2 cut(s) 183, 534
BstKTI GATC 4 cut(s) 91, 379, 454, 495
BstMAI GTCTC 1 cut(s) 578
BstMBI GATC 4 cut(s) 88, 376, 451, 492
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstSLI GKGCMC 1 cut(s) 353
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
Bsu15I ATCGAT 1 cut(s) 91
BsuI GTATCC 1 cut(s) 313
BsuRI GGCC 2 cut(s) 172, 414
BsuTUI ATCGAT 1 cut(s) 91
BtsCI GGATG 2 cut(s) 183, 534
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 3 cut(s) 221, 523, 594
BveI ACCTGC 1 cut(s) 586
Cac8I GCNNGC 1 cut(s) 282
Cfr13I GGNCC 4 cut(s) 170, 404, 412, 512
ClaI ATCGAT 1 cut(s) 91
CviAII CATG 3 cut(s) 80, 131, 472
CviJI RGCY 9 cut(s) 52, 105, 149, 172, 392, 414, 449, 536, 597
CviKI_1 RGCY 9 cut(s) 52, 105, 149, 172, 392, 414, 449, 536, 597
DdeI CTNAG 3 cut(s) 210, 582, 614
DpnI GATC 4 cut(s) 90, 378, 453, 494
DpnII GATC 4 cut(s) 88, 376, 451, 492
Eco47I GGWCC 2 cut(s) 404, 512
Eco57I CTGAAG 1 cut(s) 558
EcoO109I RGGNCCY 2 cut(s) 412, 512
EcoRII CCWGG 1 cut(s) 166
FaeI CATG 3 cut(s) 83, 134, 475
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FaqI GGGAC 2 cut(s) 244, 525
FatI CATG 3 cut(s) 79, 130, 471
FauNDI CATATG 1 cut(s) 400
FblI GTMKAC 1 cut(s) 44
FokI GGATG 2 cut(s) 170, 541
FspBI CTAG 1 cut(s) 255
GsuI CTGGAG 1 cut(s) 329
HaeIII GGCC 2 cut(s) 172, 414
Hin1II CATG 3 cut(s) 83, 134, 475
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HinfI GANTC 3 cut(s) 27, 41, 119
HphI GGTGA 2 cut(s) 49, 128
Hpy166II GTNNAC 2 cut(s) 45, 469
Hpy188I TCNGA 2 cut(s) 146, 617
Hpy188III TCNNGA 1 cut(s) 31
Hpy8I GTNNAC 2 cut(s) 45, 469
HpyAV CCTTC 1 cut(s) 190
HpyCH4III ACNGT 2 cut(s) 463, 589
HpyCH4V TGCA 4 cut(s) 24, 134, 194, 345
HpyF3I CTNAG 3 cut(s) 210, 582, 614
Hsp92II CATG 3 cut(s) 83, 134, 475
Kzo9I GATC 4 cut(s) 88, 376, 451, 492
LpnPI CCDG 9 cut(s) 87, 153, 180, 293, 294, 393, 420, 511, 591
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 68
MalI GATC 4 cut(s) 90, 378, 453, 494
MboI GATC 4 cut(s) 88, 376, 451, 492
MboII GAAGA 5 cut(s) 133, 325, 551, 563, 575
MfeI CAATTG 1 cut(s) 237
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 1 cut(s) 353
MluCI AATT 2 cut(s) 237, 518
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 6 cut(s) 65, 120, 403, 495, 525, 615
MseI TTAA 3 cut(s) 8, 153, 440
MslI CAYNNNNRTG 1 cut(s) 476
MspR9I CCNGG 1 cut(s) 168
MunI CAATTG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 168
NdeI CATATG 1 cut(s) 400
NdeII GATC 4 cut(s) 88, 376, 451, 492
NlaIII CATG 3 cut(s) 83, 134, 475
NlaIV GGNNCC 2 cut(s) 378, 513
NmuCI GTSAC 1 cut(s) 68
PfeI GAWTC 2 cut(s) 27, 119
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PpuMI RGGWCCY 1 cut(s) 512
Psp5II RGGWCCY 1 cut(s) 512
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 2 cut(s) 378, 513
PspPI GGNCC 4 cut(s) 170, 404, 412, 512
PspPPI RGGWCCY 1 cut(s) 512
PsuI RGATCY 1 cut(s) 376
RseI CAYNNNNRTG 1 cut(s) 476
SaqAI TTAA 3 cut(s) 8, 153, 440
Sau3AI GATC 4 cut(s) 88, 376, 451, 492
Sau96I GGNCC 4 cut(s) 170, 404, 412, 512
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 1 cut(s) 353
SetI ASST 9 cut(s) 130, 151, 169, 182, 211, 394, 517, 580, 599
SfaNI GCATC 1 cut(s) 277
SinI GGWCC 2 cut(s) 404, 512
SmiMI CAYNNNNRTG 1 cut(s) 476
Sse9I AATT 2 cut(s) 237, 518
SspMI CTAG 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 166
TaaI ACNGT 2 cut(s) 463, 589
TaqI TCGA 2 cut(s) 39, 91
TasI AATT 2 cut(s) 237, 518
TfiI GAWTC 2 cut(s) 27, 119
Tru1I TTAA 3 cut(s) 8, 153, 440
Tru9I TTAA 3 cut(s) 8, 153, 440
TscAI CASTG 3 cut(s) 221, 530, 594
TseFI GTSAC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 4 cut(s) 172, 570, 576, 588
TspRI CASTG 3 cut(s) 221, 530, 594
VpaK11BI GGWCC 2 cut(s) 404, 512
XmiI GTMKAC 1 cut(s) 44
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.