Rh2CG639400

yrdC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0015282
Physical Location & Seq
Forward (+)
81008409 .. 81010657
2249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG639400.1

Sequence Viewer

Length: 777 bp
ATGGCAATGGCTTCCCGTCCAAAACTCTACGCCGGCGACTTAGCTTCATCTTTCAGCTTCTCCCGGTCTTTGCCAAACCCTAAGCTTTTCCCCTCTCCACGTGTCTACTTCGCCGCTCCGAAAAGCCGGCGGTTCCAAGTGTTGGCTTTCGCCGTCAAGCGGAGCCCTAAGCGTCTCAAATACTCCACTCCTCGCTTCACCAAGCCCCTCACCATCTTGTGTCACTCGTTCCATGACATTGATCGATTTACAACAGGCTTCCCTCGTGGTGATTCCAAAGGTCATGCAAATATCTTCCGAGCTGTTAAGCAATGCTTACCTGGGCCTTATACCTTCATCCTAACTGCAACCAAAGAACTACCTAAGCAGTGTATAGGGTTTGGGACGGCAATTGCCAAATACAAATCTAGGAAAAATGTGGGTGTTCGTATGCCTGCTGATGCCATCTGTCAAGCGATACTGGAGAAGATGGATACACCATTGATTTCCACAAGTTGCAAGTGCCCGAAGGAAAATGAGTGGATTTTGGATCCAGTTGTTATAGCTGATACATATGGACCAGAGGGCCTTGATTTTGTCATTGATGGTGGGTTAAGAGTGGCTGATCCATCAACTGTGGTTGACATGACAGTGTTTCCTCCCAAGATCATACGACAAGGAAAGGGACCTCAATTACACTGGATGGTGGCTGAAGATGACAATGAAGATGAATATGAAGATGACAATGAACCTGCTGAGACAGTGGAAAGCTTATCTCCTCAACCACTCAGAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sua5_yciO_yrdC

Protein Analysis

258

Amino Acids

28.83

Weight (kDa)

9.07

Isoelectric Point (pI)

54.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sua5_yciO_yrdC PF01300 67 - 220 7.3e-25 Telomere recombination
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015282)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01920 AT3G01920
fragaria_vesca FvH4_6g53521
malus_domestica MD09G1010800.v1.1
prunus_persica Prupe.3G306300_v2.0.a1
pyrus_communis pycom111g00900
rosa_chinensis RchiOBHm_Chr2g0175561
rosa_laevigata RLG00000022339
rosa_multiflora Rmu_sc0013970.1_g000004
rosa_roxburghii Rroxscaffold_2G00077220
rosa_rugosa Rorug02G0586500
rosa_samantha Rh2AG665400 Rh2BG676200 Rh2CG639400 Rh2DG690200
rosa_wichuraiana Rw2G054550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 739
AccB7I CCANNNNNTGG 1 cut(s) 142
AccBSI CCGCTC 1 cut(s) 116
AccI GTMKAC 1 cut(s) 105
AciI CCGC 3 cut(s) 114, 130, 160
AclWI GGATC 3 cut(s) 524, 537, 599
AcuI CTGAAG 1 cut(s) 711
AcvI CACGTG 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 142, 159
AflIII ACRYGT 1 cut(s) 100
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 6 cut(s) 44, 57, 85, 302, 545, 750
AluI AGCT 6 cut(s) 44, 57, 85, 302, 545, 750
Alw26I GTCTC 2 cut(s) 179, 731
AlwI GGATC 3 cut(s) 524, 537, 599
AoxI GGCC 2 cut(s) 323, 565
AspS9I GGNCC 4 cut(s) 323, 557, 565, 665
AsuC2I CCSGG 1 cut(s) 64
AsuHPI GGTGA 3 cut(s) 190, 202, 281
AvaII GGWCC 2 cut(s) 557, 665
BaeGI GKGCMC 1 cut(s) 506
BamHI GGATCC 1 cut(s) 529
BanII GRGCYC 1 cut(s) 167
BauI CACGAG 1 cut(s) 264
BbrPI CACGTG 1 cut(s) 101
BccI CCATC 6 cut(s) 221, 452, 463, 578, 616, 676
BceAI ACGGC 2 cut(s) 137, 402
BciT130I CCWGG 1 cut(s) 321
BciVI GTATCC 1 cut(s) 466
BcnI CCSGG 1 cut(s) 64
BcoDI GTCTC 2 cut(s) 179, 731
BfaI CTAG 1 cut(s) 408
BfuAI ACCTGC 1 cut(s) 739
BfuI GTATCC 1 cut(s) 466
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 2 cut(s) 64, 321
Bme18I GGWCC 2 cut(s) 557, 665
BmgT120I GGNCC 4 cut(s) 323, 557, 565, 665
BmiI GGNNCC 4 cut(s) 134, 164, 531, 666
BmrFI CCNGG 2 cut(s) 64, 321
BmsI GCATC 1 cut(s) 430
BpmI CTGGAG 1 cut(s) 482
Bpu10I CCTNAGC 3 cut(s) 81, 168, 363
BpuMI CCSGG 1 cut(s) 64
Bsa29I ATCGAT 1 cut(s) 244
BsaAI YACGTR 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 320
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 159
Bse118I RCCGGY 2 cut(s) 32, 126
Bse1I ACTGG 3 cut(s) 465, 533, 683
Bse3DI GCAATG 2 cut(s) 12, 317
BseBI CCWGG 1 cut(s) 321
BseCI ATCGAT 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 320
BseGI GGATG 2 cut(s) 336, 687
BseLI CCNNNNNNNGG 2 cut(s) 142, 159
BseMI GCAATG 2 cut(s) 12, 317
BseMII CTCAG 1 cut(s) 726
BseNI ACTGG 3 cut(s) 465, 533, 683
BseRI GAGGAG 2 cut(s) 180, 747
BseSI GKGCMC 1 cut(s) 506
BshFI GGCC 2 cut(s) 325, 567
BshVI ATCGAT 1 cut(s) 244
BsiSI CCGG 3 cut(s) 33, 64, 127
BslFI GGGAC 2 cut(s) 397, 678
BslI CCNNNNNNNGG 2 cut(s) 142, 159
BsmAI GTCTC 2 cut(s) 179, 731
BsmBI CGTCTC 1 cut(s) 179
BsmFI GGGAC 2 cut(s) 397, 678
BsnI GGCC 2 cut(s) 325, 567
Bsp1286I GDGCHC 2 cut(s) 167, 506
Bsp143I GATC 4 cut(s) 241, 529, 604, 645
BspACI CCGC 3 cut(s) 114, 130, 160
BspANI GGCC 2 cut(s) 325, 567
BspCNI CTCAG 1 cut(s) 727
BspDI ATCGAT 1 cut(s) 244
BspLI GGNNCC 4 cut(s) 134, 164, 531, 666
BspMI ACCTGC 1 cut(s) 739
BspPI GGATC 3 cut(s) 524, 537, 599
BsrBI CCGCTC 1 cut(s) 116
BsrDI GCAATG 2 cut(s) 12, 317
BsrFI RCCGGY 2 cut(s) 32, 126
BsrI ACTGG 3 cut(s) 465, 533, 683
BssAI RCCGGY 2 cut(s) 32, 126
BssECI CCNNGG 1 cut(s) 320
BssMI GATC 4 cut(s) 241, 529, 604, 645
BssSI CACGAG 1 cut(s) 264
Bst2BI CACGAG 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 3 cut(s) 616, 631, 742
BstBAI YACGTR 1 cut(s) 101
BstC8I GCNNGC 3 cut(s) 34, 128, 435
BstDEI CTNAG 6 cut(s) 40, 81, 168, 363, 735, 767
BstF5I GGATG 2 cut(s) 336, 687
BstKTI GATC 4 cut(s) 244, 532, 607, 648
BstMAI GTCTC 2 cut(s) 179, 731
BstMBI GATC 4 cut(s) 241, 529, 604, 645
BstNI CCWGG 1 cut(s) 321
BstSCI CCNGG 2 cut(s) 62, 319
BstSLI GKGCMC 1 cut(s) 506
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
Bsu15I ATCGAT 1 cut(s) 244
BsuI GTATCC 1 cut(s) 466
BsuRI GGCC 2 cut(s) 325, 567
BsuTUI ATCGAT 1 cut(s) 244
BtsCI GGATG 2 cut(s) 336, 687
BtsI GCAGTG 1 cut(s) 374
BtsIMutI CAGTG 4 cut(s) 374, 636, 676, 747
BveI ACCTGC 1 cut(s) 739
Cac8I GCNNGC 3 cut(s) 34, 128, 435
Cfr10I RCCGGY 2 cut(s) 32, 126
Cfr13I GGNCC 4 cut(s) 323, 557, 565, 665
ClaI ATCGAT 1 cut(s) 244
CseI GACGC 1 cut(s) 161
CviAII CATG 3 cut(s) 233, 284, 625
DdeI CTNAG 6 cut(s) 40, 81, 168, 363, 735, 767
DpnI GATC 4 cut(s) 243, 531, 606, 647
DpnII GATC 4 cut(s) 241, 529, 604, 645
Eco24I GRGCYC 1 cut(s) 167
Eco47I GGWCC 2 cut(s) 557, 665
Eco57I CTGAAG 1 cut(s) 711
Eco72I CACGTG 1 cut(s) 101
EcoO109I RGGNCCY 2 cut(s) 565, 665
EcoRII CCWGG 1 cut(s) 319
EcoT38I GRGCYC 1 cut(s) 167
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 3 cut(s) 236, 287, 628
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FaqI GGGAC 2 cut(s) 397, 678
FatI CATG 3 cut(s) 232, 283, 624
FauNDI CATATG 1 cut(s) 553
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 2 cut(s) 323, 694
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 1 cut(s) 408
GluI GCNGC 1 cut(s) 114
GsuI CTGGAG 1 cut(s) 482
HaeIII GGCC 2 cut(s) 325, 567
HapII CCGG 3 cut(s) 33, 64, 127
HgaI GACGC 1 cut(s) 161
Hin1II CATG 3 cut(s) 236, 287, 628
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HindIII AAGCTT 2 cut(s) 83, 748
HinfI GANTC 1 cut(s) 272
HpaII CCGG 3 cut(s) 33, 64, 127
HphI GGTGA 3 cut(s) 190, 202, 281
Hpy166II GTNNAC 2 cut(s) 106, 622
Hpy188I TCNGA 3 cut(s) 120, 299, 770
Hpy8I GTNNAC 2 cut(s) 106, 622
HpyAV CCTTC 2 cut(s) 343, 502
HpyCH4III ACNGT 3 cut(s) 616, 631, 742
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 3 cut(s) 287, 347, 498
HpyF3I CTNAG 6 cut(s) 40, 81, 168, 363, 735, 767
HpySE526I ACGT 1 cut(s) 100
Hsp92II CATG 3 cut(s) 236, 287, 628
KroI GCCGGC 2 cut(s) 32, 126
KroNI GCCGGC 2 cut(s) 34, 128
Kzo9I GATC 4 cut(s) 241, 529, 604, 645
LmnI GCTCC 2 cut(s) 121, 162
LweI GCATC 1 cut(s) 430
MaeI CTAG 1 cut(s) 408
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 1 cut(s) 221
MalI GATC 4 cut(s) 243, 531, 606, 647
MbiI CCGCTC 1 cut(s) 116
MboI GATC 4 cut(s) 241, 529, 604, 645
MboII GAAGA 5 cut(s) 286, 478, 704, 716, 728
MfeI CAATTG 1 cut(s) 390
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 2 cut(s) 167, 506
MluCI AATT 2 cut(s) 390, 671
MnlI CCTC 8 cut(s) 103, 201, 218, 273, 556, 648, 678, 768
MreI CGCCGGCG 1 cut(s) 32
MroNI GCCGGC 2 cut(s) 32, 126
MseI TTAA 2 cut(s) 306, 593
MslI CAYNNNNRTG 1 cut(s) 629
MspI CCGG 3 cut(s) 33, 64, 127
MspR9I CCNGG 2 cut(s) 64, 321
MunI CAATTG 1 cut(s) 390
MvaI CCWGG 1 cut(s) 321
NaeI GCCGGC 2 cut(s) 34, 128
NciI CCSGG 1 cut(s) 64
NdeI CATATG 1 cut(s) 553
NdeII GATC 4 cut(s) 241, 529, 604, 645
NgoMIV GCCGGC 2 cut(s) 32, 126
NlaIII CATG 3 cut(s) 236, 287, 628
NlaIV GGNNCC 4 cut(s) 134, 164, 531, 666
NmuCI GTSAC 1 cut(s) 221
PdiI GCCGGC 2 cut(s) 34, 128
PfeI GAWTC 1 cut(s) 272
PflMI CCANNNNNTGG 1 cut(s) 142
PkrI GCNGC 1 cut(s) 115
PmaCI CACGTG 1 cut(s) 101
PmlI CACGTG 1 cut(s) 101
Ppu21I YACGTR 1 cut(s) 101
PpuMI RGGWCCY 1 cut(s) 665
Psp5II RGGWCCY 1 cut(s) 665
Psp6I CCWGG 1 cut(s) 319
PspCI CACGTG 1 cut(s) 101
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 4 cut(s) 134, 164, 531, 666
PspPI GGNCC 4 cut(s) 323, 557, 565, 665
PspPPI RGGWCCY 1 cut(s) 665
PsuI RGATCY 1 cut(s) 529
RseI CAYNNNNRTG 1 cut(s) 629
SaqAI TTAA 2 cut(s) 306, 593
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 4 cut(s) 241, 529, 604, 645
Sau96I GGNCC 4 cut(s) 323, 557, 565, 665
ScrFI CCNGG 2 cut(s) 64, 321
SduI GDGCHC 2 cut(s) 167, 506
SfaNI GCATC 1 cut(s) 430
SgrAI CRCCGGYG 1 cut(s) 32
SinI GGWCC 2 cut(s) 557, 665
SmiMI CAYNNNNRTG 1 cut(s) 629
Sse9I AATT 2 cut(s) 390, 671
SsiI CCGC 3 cut(s) 114, 130, 160
SspMI CTAG 1 cut(s) 408
StyD4I CCNGG 2 cut(s) 62, 319
TaaI ACNGT 3 cut(s) 616, 631, 742
TaiI ACGT 1 cut(s) 103
TaqI TCGA 1 cut(s) 244
TasI AATT 2 cut(s) 390, 671
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 2 cut(s) 306, 593
Tru9I TTAA 2 cut(s) 306, 593
TscAI CASTG 4 cut(s) 374, 636, 683, 747
TseFI GTSAC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 6 cut(s) 36, 325, 717, 723, 729, 741
TspRI CASTG 4 cut(s) 374, 636, 683, 747
Van91I CCANNNNNTGG 1 cut(s) 142
VpaK11BI GGWCC 2 cut(s) 557, 665
XmiI GTMKAC 1 cut(s) 105
XspI CTAG 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.