Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014953

Physical Location & Seq

Genomic Coordinates Reverse (-)

325952 .. 327412

Gene Structure 1461 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G01970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGAGGATAGGAGGTGTGATGTGTTGTTTCCATGTTCATCATCGGTTGATCCTCGCTTGACAGAGTTTCATGGGGTCGACAACTCTGCTCAGCCGACAACATCATCCGAAGAGAAGCCAAGGAGTAAGAAGAAGAAGAAAGAGAGAGAAGCGAGGTACGCGTTCCAGACAAGAAGCCAGGTTGATATACTGGATGATGGATACAGGTGGAGGAAGTACGGCCAAAAAGCAGTCAAGAACAATCCATTCCCCAGGAGCTATTATAAGTGCACAGAAGAAGGATGCAGAGTGAAGAAGCAAGTGCAGAGGCAATGGGGAGACGAAGGAGTGGTGGTGACGACATACCAAGGTGTTCATACACATGCCGTTGATAAACCCTCTGATAATTTCCACCACATCTTGACACAAATGCACATCTTCCCTCCCTTTTGCTTGAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0008134 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015698 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

147

Amino Acids

17.23

Weight (kDa)

9.1

Isoelectric Point (pI)

57.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	65 - 121	2.1e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0014953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01970
fragaria_vesca	FvH4_6g53770
malus_domestica	MD09G1008800.v1.1 MD17G1001500.v1.1
prunus_persica	Prupe.3G308200_v2.0.a1
pyrus_communis	pycom111g00710
rosa_chinensis	RchiOBHm_Chr2g0175911
rosa_laevigata	RLG00000022363
rosa_multiflora	Rmu_ssc0000114.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076960
rosa_rugosa	Rorug02G0588400
rosa_samantha	Rh2AG667700 Rh2BG679200 Rh2CG642000 Rh2DG692700
rosa_wichuraiana	Rw2G054730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	264
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	1 cut(s)	161
AclWI	GGATC	1 cut(s)	44
AcoI	YGGCCR	1 cut(s)	220
AfaI	GTAC	2 cut(s)	158, 218
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	1 cut(s)	436
AjnI	CCWGG	2 cut(s)	177, 251
AluBI	AGCT	1 cut(s)	258
AluI	AGCT	1 cut(s)	258
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	1 cut(s)	312
Alw44I	GTGCAC	1 cut(s)	268
AlwI	GGATC	1 cut(s)	44
AoxI	GGCC	1 cut(s)	220
ApaLI	GTGCAC	1 cut(s)	268
AsuHPI	GGTGA	1 cut(s)	346
BaeGI	GKGCMC	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	272
BccI	CCATC	1 cut(s)	191
BceAI	ACGGC	2 cut(s)	235, 350
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BciT130I	CCWGG	2 cut(s)	179, 253
BciVI	GTATCC	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	312
BfuI	GTATCC	1 cut(s)	194
BlpI	GCTNAGC	1 cut(s)	90
Bme1390I	CCNGG	2 cut(s)	179, 253
BmrFI	CCNGG	2 cut(s)	179, 253
BmsI	GCATC	1 cut(s)	272
Bpu1102I	GCTNAGC	1 cut(s)	90
BsaJI	CCNNGG	3 cut(s)	119, 251, 346
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bse1I	ACTGG	1 cut(s)	195
Bse3DI	GCAATG	1 cut(s)	317
BseBI	CCWGG	2 cut(s)	179, 253
BseDI	CCNNGG	3 cut(s)	119, 251, 346
BseGI	GGATG	3 cut(s)	104, 199, 287
BseMI	GCAATG	1 cut(s)	317
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	195
BseSI	GKGCMC	1 cut(s)	272
BsgI	GTGCAG	1 cut(s)	323
Bsh1236I	CGCG	1 cut(s)	161
BshFI	GGCC	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	312
BsmBI	CGTCTC	1 cut(s)	312
BsnI	GGCC	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp143I	GATC	1 cut(s)	49
Bsp1720I	GCTNAGC	1 cut(s)	90
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	1 cut(s)	103
BspFNI	CGCG	1 cut(s)	161
BspPI	GGATC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	195
BssECI	CCNNGG	3 cut(s)	119, 251, 346
BssMI	GATC	1 cut(s)	49
BssT1I	CCWWGG	2 cut(s)	119, 346
Bst2UI	CCWGG	2 cut(s)	179, 253
Bst6I	CTCTTC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	90
BstF5I	GGATG	3 cut(s)	104, 199, 287
BstFNI	CGCG	1 cut(s)	161
BstKTI	GATC	1 cut(s)	52
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	2 cut(s)	179, 253
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	2 cut(s)	177, 251
BstSLI	GKGCMC	1 cut(s)	272
BstUI	CGCG	1 cut(s)	161
BsuI	GTATCC	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	222
BtsCI	GGATG	3 cut(s)	104, 199, 287
Csp6I	GTAC	2 cut(s)	157, 217
CviAII	CATG	3 cut(s)	33, 71, 362
CviJI	RGCY	5 cut(s)	94, 118, 177, 222, 258
CviKI_1	RGCY	5 cut(s)	94, 118, 177, 222, 258
CviQI	GTAC	2 cut(s)	157, 217
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco130I	CCWWGG	2 cut(s)	119, 346
EcoRII	CCWGG	2 cut(s)	177, 251
EcoT14I	CCWWGG	2 cut(s)	119, 346
ErhI	CCWWGG	2 cut(s)	119, 346
Esp3I	CGTCTC	1 cut(s)	312
FaeI	CATG	3 cut(s)	36, 74, 365
FaiI	YATR	7 cut(s)	34, 72, 188, 264, 343, 357, 363
FatI	CATG	3 cut(s)	32, 70, 361
FblI	GTMKAC	1 cut(s)	78
FokI	GGATG	3 cut(s)	91, 206, 294
HaeIII	GGCC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	36, 74, 365
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	2 cut(s)	79, 270
Hpy188I	TCNGA	2 cut(s)	109, 382
Hpy188III	TCNNGA	3 cut(s)	166, 235, 400
Hpy8I	GTNNAC	2 cut(s)	79, 270
HpyAV	CCTTC	3 cut(s)	272, 317, 430
HpyCH4V	TGCA	4 cut(s)	270, 285, 304, 412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	36, 74, 365
Kzo9I	GATC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	255
LpnPI	CCDG	7 cut(s)	164, 176, 179, 190, 191, 238, 265
LweI	GCATC	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	7 cut(s)	122, 142, 145, 148, 287, 304, 409
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	1 cut(s)	385
MluI	ACGCGT	1 cut(s)	159
MnlI	CCTC	7 cut(s)	6, 63, 147, 204, 300, 388, 432
MslI	CAYNNNNRTG	1 cut(s)	360
MspR9I	CCNGG	2 cut(s)	179, 253
MvaI	CCWGG	2 cut(s)	179, 253
MvnI	CGCG	1 cut(s)	161
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	3 cut(s)	36, 74, 365
NmuCI	GTSAC	1 cut(s)	334
NspI	RCATGY	1 cut(s)	365
PsiI	TTATAA	1 cut(s)	264
Psp6I	CCWGG	2 cut(s)	177, 251
PspGI	CCWGG	2 cut(s)	177, 251
RsaI	GTAC	2 cut(s)	158, 218
RsaNI	GTAC	2 cut(s)	157, 217
RseI	CAYNNNNRTG	1 cut(s)	360
SalI	GTCGAC	1 cut(s)	77
Sau3AI	GATC	1 cut(s)	49
ScrFI	CCNGG	2 cut(s)	179, 253
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	6 cut(s)	17, 158, 183, 209, 260, 352
SfaNI	GCATC	1 cut(s)	272
SmiMI	CAYNNNNRTG	1 cut(s)	360
Sse9I	AATT	1 cut(s)	385
StyD4I	CCNGG	2 cut(s)	177, 251
StyI	CCWWGG	2 cut(s)	119, 346
TaqI	TCGA	1 cut(s)	78
TasI	AATT	1 cut(s)	385
TseFI	GTSAC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	3 cut(s)	27, 59, 344
VneI	GTGCAC	1 cut(s)	268
XceI	RCATGY	1 cut(s)	365
XmiI	GTMKAC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.