Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014953

Physical Location & Seq

Genomic Coordinates Reverse (-)

39362619 .. 39364707

Gene Structure 2089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g53770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGAAAACAACCAAATGTTCTTCCCCGGATCATCATCATCAGCTTCATCCTCTTCGTCAATGGCGGCTTTTTCATCACCGAATATGGGAAGCCCTCAAGTACTACTTTACAGTAGCAGCGGTACTGCCAACTATGGCGGTGATGACCGTAGTAGTTCAATTAGTCGTCACAGCCTTTTGGGATCGGCGATGGGAACAGAAAACCATGCAGCTAATGGCGGGAGACAACTTGCTGTTAAACACGATGACGACGACCATTATTCCGATGATCGTGCTGAACATCATGATCAAAGTCCGGCGGCGGCTGATAACTCATCAGGTAAGATGAAGAAGAAAACGAGAAAGCCCAAGTATGCTTTTCAGACGAGGAGCCAGGTTGATATACTTGACGATGGCTATCGCTGGAGAAAATATGGCCAAAAAGCAGTCAAAGCAAACAGATTCCCCAGAAGCTACTATCGATGCACGTATGAAGGGTGCAATGTTAAGAAGCAAGTGCAAAGGTTAAGCAAGGATGAAGGCATTGTGGTAACCACCTACGAAGGGATGCACTCTCATCCAATCGACAAGCCTAATTCTGACAATTTCGAACATATCTTGTCTCAAATGCAACTCGCAAATCACACAGGCCAGCTAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010053 GO:0010055 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015698 GO:0019219 GO:0019222 GO:0022622 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0033554 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043620 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048583 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0090627 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

214

Amino Acids

23.55

Weight (kDa)

8.76

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	130 - 187	1.7e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01970
fragaria_vesca	FvH4_6g53770
malus_domestica	MD09G1008800.v1.1 MD17G1001500.v1.1
prunus_persica	Prupe.3G308200_v2.0.a1
pyrus_communis	pycom111g00710
rosa_chinensis	RchiOBHm_Chr2g0175911
rosa_laevigata	RLG00000022363
rosa_multiflora	Rmu_ssc0000114.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076960
rosa_rugosa	Rorug02G0588400
rosa_samantha	Rh2AG667700 Rh2BG679200 Rh2CG642000 Rh2DG692700
rosa_wichuraiana	Rw2G054730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	65, 120, 138, 219, 299, 302
AclWI	GGATC	2 cut(s)	37, 190
AcoI	YGGCCR	1 cut(s)	415
AfaI	GTAC	2 cut(s)	102, 124
AfiI	CCNNNNNNNGG	2 cut(s)	86, 543
AgsI	TTSAA	1 cut(s)	159
AjnI	CCWGG	1 cut(s)	372
AluBI	AGCT	4 cut(s)	44, 212, 453, 634
AluI	AGCT	4 cut(s)	44, 212, 453, 634
Alw26I	GTCTC	2 cut(s)	217, 606
AlwI	GGATC	2 cut(s)	37, 190
AoxI	GGCC	2 cut(s)	415, 628
ApeKI	GCWGC	2 cut(s)	117, 209
AsuC2I	CCSGG	1 cut(s)	27
AsuHPI	GGTGA	2 cut(s)	69, 152
AsuII	TTCGAA	1 cut(s)	588
BalI	TGGCCA	1 cut(s)	417
BbvI	GCAGC	2 cut(s)	129, 221
BccI	CCATC	2 cut(s)	184, 386
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BciT130I	CCWGG	1 cut(s)	374
BclI	TGATCA	1 cut(s)	286
BcnI	CCSGG	1 cut(s)	27
BcoDI	GTCTC	2 cut(s)	217, 606
BfaI	CTAG	1 cut(s)	635
BisI	GCNGC	5 cut(s)	66, 118, 210, 300, 303
BlsI	GCNGC	5 cut(s)	67, 119, 211, 301, 304
BmcAI	AGTACT	1 cut(s)	102
Bme1390I	CCNGG	2 cut(s)	27, 374
BmiI	GGNNCC	1 cut(s)	371
BmrFI	CCNGG	2 cut(s)	27, 374
BmsI	GCATC	2 cut(s)	452, 537
BpmI	CTGGAG	1 cut(s)	424
Bpu14I	TTCGAA	1 cut(s)	588
BpuEI	CTTGAG	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	27
Bsa29I	ATCGAT	1 cut(s)	460
BsaAI	YACGTR	1 cut(s)	468
BsaBI	GATNNNNATC	2 cut(s)	34, 396
BsaJI	CCNNGG	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 543
Bse3DI	GCAATG	1 cut(s)	487
Bse8I	GATNNNNATC	2 cut(s)	34, 396
BseBI	CCWGG	1 cut(s)	374
BseCI	ATCGAT	1 cut(s)	460
BseDI	CCNNGG	1 cut(s)	25
BseGI	GGATG	4 cut(s)	47, 520, 552, 556
BseJI	GATNNNNATC	2 cut(s)	34, 396
BseLI	CCNNNNNNNGG	2 cut(s)	86, 543
BseMI	GCAATG	1 cut(s)	487
BseRI	GAGGAG	1 cut(s)	382
BseXI	GCAGC	2 cut(s)	129, 221
BshFI	GGCC	2 cut(s)	417, 630
BshVI	ATCGAT	1 cut(s)	460
BsiSI	CCGG	2 cut(s)	27, 296
BslI	CCNNNNNNNGG	2 cut(s)	86, 543
BsmAI	GTCTC	2 cut(s)	217, 606
BsnI	GGCC	2 cut(s)	417, 630
Bsp119I	TTCGAA	1 cut(s)	588
Bsp143I	GATC	4 cut(s)	29, 182, 268, 286
BspACI	CCGC	6 cut(s)	65, 120, 138, 219, 299, 302
BspANI	GGCC	2 cut(s)	417, 630
BspDI	ATCGAT	1 cut(s)	460
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	371
BspPI	GGATC	2 cut(s)	37, 190
BspT104I	TTCGAA	1 cut(s)	588
BsrDI	GCAATG	1 cut(s)	487
BssECI	CCNNGG	1 cut(s)	25
BssMI	GATC	4 cut(s)	29, 182, 268, 286
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	2 cut(s)	113, 149
Bst6I	CTCTTC	1 cut(s)	58
BstBAI	YACGTR	1 cut(s)	468
BstBI	TTCGAA	1 cut(s)	588
BstC8I	GCNNGC	1 cut(s)	632
BstEII	GGTNACC	1 cut(s)	529
BstF5I	GGATG	4 cut(s)	47, 520, 552, 556
BstKTI	GATC	4 cut(s)	32, 185, 271, 289
BstMAI	GTCTC	2 cut(s)	217, 606
BstMBI	GATC	4 cut(s)	29, 182, 268, 286
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNI	CCWGG	1 cut(s)	374
BstPI	GGTNACC	1 cut(s)	529
BstSCI	CCNGG	2 cut(s)	25, 372
BstV1I	GCAGC	2 cut(s)	129, 221
Bsu15I	ATCGAT	1 cut(s)	460
BsuRI	GGCC	2 cut(s)	417, 630
BsuTUI	ATCGAT	1 cut(s)	460
BtgZI	GCGATG	1 cut(s)	203
BtsCI	GGATG	4 cut(s)	47, 520, 552, 556
Cac8I	GCNNGC	1 cut(s)	632
CciI	TCATGA	1 cut(s)	283
ClaI	ATCGAT	1 cut(s)	460
Csp6I	GTAC	2 cut(s)	101, 123
CviAII	CATG	2 cut(s)	206, 284
CviQI	GTAC	2 cut(s)	101, 123
DpnI	GATC	4 cut(s)	31, 184, 270, 288
DpnII	GATC	4 cut(s)	29, 182, 268, 286
EaeI	YGGCCR	1 cut(s)	415
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
Eco91I	GGTNACC	1 cut(s)	529
EcoO65I	GGTNACC	1 cut(s)	529
EcoRII	CCWGG	1 cut(s)	372
FaeI	CATG	2 cut(s)	209, 287
FaiI	YATR	9 cut(s)	86, 135, 207, 285, 354, 383, 414, 471, 594
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FatI	CATG	2 cut(s)	205, 283
FauI	CCCGC	1 cut(s)	212
FbaI	TGATCA	1 cut(s)	286
Fnu4HI	GCNGC	5 cut(s)	66, 118, 210, 300, 303
FokI	GGATG	4 cut(s)	34, 527, 543, 559
Fsp4HI	GCNGC	5 cut(s)	66, 118, 210, 300, 303
FspBI	CTAG	1 cut(s)	635
GluI	GCNGC	5 cut(s)	66, 118, 210, 300, 303
GsuI	CTGGAG	1 cut(s)	424
HaeIII	GGCC	2 cut(s)	417, 630
HapII	CCGG	2 cut(s)	27, 296
Hin1II	CATG	2 cut(s)	209, 287
HinfI	GANTC	1 cut(s)	441
HpaII	CCGG	2 cut(s)	27, 296
HphI	GGTGA	2 cut(s)	69, 152
Hpy188I	TCNGA	3 cut(s)	265, 363, 580
Hpy188III	TCNNGA	1 cut(s)	284
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	3 cut(s)	467, 512, 536
HpyCH4III	ACNGT	2 cut(s)	113, 149
HpyCH4IV	ACGT	1 cut(s)	467
HpyCH4V	TGCA	6 cut(s)	209, 465, 480, 499, 550, 610
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpySE526I	ACGT	1 cut(s)	467
Hsp92II	CATG	2 cut(s)	209, 287
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	4 cut(s)	29, 182, 268, 286
LmnI	GCTCC	1 cut(s)	369
LpnPI	CCDG	8 cut(s)	40, 303, 309, 359, 386, 388, 460, 612
Lsp1109I	GCAGC	2 cut(s)	129, 221
LweI	GCATC	2 cut(s)	452, 537
MaeI	CTAG	1 cut(s)	635
MaeII	ACGT	1 cut(s)	467
MaeIII	GTNAC	2 cut(s)	167, 529
MalI	GATC	4 cut(s)	31, 184, 270, 288
MboI	GATC	4 cut(s)	29, 182, 268, 286
MboII	GAAGA	4 cut(s)	13, 45, 340, 343
MlsI	TGGCCA	1 cut(s)	417
MluCI	AATT	3 cut(s)	159, 574, 583
MluNI	TGGCCA	1 cut(s)	417
MnlI	CCTC	3 cut(s)	61, 105, 360
Mox20I	TGGCCA	1 cut(s)	417
MscI	TGGCCA	1 cut(s)	417
MseI	TTAA	3 cut(s)	237, 486, 506
Msp20I	TGGCCA	1 cut(s)	417
MspA1I	CMGCKG	1 cut(s)	120
MspI	CCGG	2 cut(s)	27, 296
MspR9I	CCNGG	2 cut(s)	27, 374
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	431
NciI	CCSGG	1 cut(s)	27
NdeII	GATC	4 cut(s)	29, 182, 268, 286
NlaIII	CATG	2 cut(s)	209, 287
NlaIV	GGNNCC	1 cut(s)	371
NmuCI	GTSAC	1 cut(s)	167
NspV	TTCGAA	1 cut(s)	588
PagI	TCATGA	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	441
PkrI	GCNGC	5 cut(s)	67, 119, 211, 301, 304
Ppu21I	YACGTR	1 cut(s)	468
Psp6I	CCWGG	1 cut(s)	372
PspEI	GGTNACC	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	371
RsaI	GTAC	2 cut(s)	102, 124
RsaNI	GTAC	2 cut(s)	101, 123
SaqAI	TTAA	3 cut(s)	237, 486, 506
SatI	GCNGC	5 cut(s)	66, 118, 210, 300, 303
Sau3AI	GATC	4 cut(s)	29, 182, 268, 286
ScaI	AGTACT	1 cut(s)	102
ScrFI	CCNGG	2 cut(s)	27, 374
SfaNI	GCATC	2 cut(s)	452, 537
SfuI	TTCGAA	1 cut(s)	588
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse9I	AATT	3 cut(s)	159, 574, 583
SsiI	CCGC	6 cut(s)	65, 120, 138, 219, 299, 302
SspMI	CTAG	1 cut(s)	635
StyD4I	CCNGG	2 cut(s)	25, 372
TaaI	ACNGT	2 cut(s)	113, 149
TaiI	ACGT	1 cut(s)	470
TaqI	TCGA	3 cut(s)	460, 564, 588
TasI	AATT	3 cut(s)	159, 574, 583
TatI	WGTACW	1 cut(s)	100
TauI	GCSGC	3 cut(s)	68, 302, 305
TfiI	GAWTC	1 cut(s)	441
Tru1I	TTAA	3 cut(s)	237, 486, 506
Tru9I	TTAA	3 cut(s)	237, 486, 506
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	2 cut(s)	117, 209
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	5 cut(s)	36, 63, 341, 486, 531
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
XspI	CTAG	1 cut(s)	635
ZrmI	AGTACT	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.