Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0014953

Physical Location & Seq

Genomic Coordinates Reverse (-)

88932710 .. 88934127

Gene Structure 1418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG679200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGACACCTACCAAATGTTCTTCCCCGGATCATCAGCTGCTTCTCCATCGTCAATGGCGGCTTTATCATCACCGAATATGGGAACCCCTCAAGTACTACTTTACAGTAGCAGCGGTACTACTAACTTTGGCGGTGAAAGTAGCAGTTCTACTCACGGCTTTTTGGGGTCGACGGGAACAGAAAACCAAGTAACTAATGGGAGACAACTTGTTGTTAAAGACGATGACGACCGTTATTCTGATGATCGTGCTGCGAATCATGATCATAGTCCGCCGGCGGCCGACAACTCGGGTAAGATGAAGAAGAAGACGAGAAAGCCTAAGTATGCTTTTCAGACGAGGAGCCAGGTTGATATACTTGACGATGGCTATCGCTGGAGAAAATATGGCCAAAAAGCAGTCAAAGCCAACAAATTCCCCAGAAGCTACTATCGATGTACGTATGAAGGGTGCAATGTTAAGAAGCAAGTGCAACGTTTAAGCAAGGATGAAGGCATTGTGGTGACCACTTACGAAGGGATGCACACTCATCCAATCGACAAGCCTAATTCCGACAATTTCGAACACATCTTGACTCAGATGCAACTTACAAATTACACAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010053 GO:0010055 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015698 GO:0019219 GO:0019222 GO:0022622 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0033554 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043620 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048583 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0090627 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

201

Amino Acids

22.42

Weight (kDa)

8.94

Isoelectric Point (pI)

35.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	121 - 178	4.6e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01970
fragaria_vesca	FvH4_6g53770
malus_domestica	MD09G1008800.v1.1 MD17G1001500.v1.1
prunus_persica	Prupe.3G308200_v2.0.a1
pyrus_communis	pycom111g00710
rosa_chinensis	RchiOBHm_Chr2g0175911
rosa_laevigata	RLG00000022363
rosa_multiflora	Rmu_ssc0000114.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076960
rosa_rugosa	Rorug02G0588400
rosa_samantha	Rh2AG667700 Rh2BG679200 Rh2CG642000 Rh2DG692700
rosa_wichuraiana	Rw2G054730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	170
AciI	CCGC	5 cut(s)	59, 114, 132, 272, 278
AclI	AACGTT	1 cut(s)	475
AclWI	GGATC	1 cut(s)	37
AcoI	YGGCCR	2 cut(s)	279, 388
AcsI	RAATTY	1 cut(s)	413
AfaI	GTAC	3 cut(s)	96, 118, 439
AfiI	CCNNNNNNNGG	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	345
AluBI	AGCT	3 cut(s)	38, 426, 603
AluI	AGCT	3 cut(s)	38, 426, 603
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	1 cut(s)	37
Ama87I	CYCGRG	1 cut(s)	289
AoxI	GGCC	2 cut(s)	279, 388
ApeKI	GCWGC	3 cut(s)	38, 111, 251
ApoI	RAATTY	1 cut(s)	413
AsuC2I	CCSGG	1 cut(s)	27
AsuHPI	GGTGA	3 cut(s)	63, 146, 514
AsuII	TTCGAA	1 cut(s)	561
AvaI	CYCGRG	1 cut(s)	289
BalI	TGGCCA	1 cut(s)	390
BbsI	GAAGAC	1 cut(s)	314
BbvI	GCAGC	3 cut(s)	25, 123, 238
BccI	CCATC	2 cut(s)	55, 359
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	347
BclI	TGATCA	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	1 cut(s)	604
BisI	GCNGC	5 cut(s)	39, 60, 112, 252, 279
BlsI	GCNGC	5 cut(s)	40, 61, 113, 253, 280
BmcAI	AGTACT	1 cut(s)	96
Bme1390I	CCNGG	2 cut(s)	27, 347
BmeT110I	CYCGRG	1 cut(s)	289
BmiI	GGNNCC	2 cut(s)	85, 344
BmrFI	CCNGG	2 cut(s)	27, 347
BmsI	GCATC	2 cut(s)	510, 570
BpiI	GAAGAC	1 cut(s)	314
BpmI	CTGGAG	1 cut(s)	397
Bpu14I	TTCGAA	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	27
Bsa29I	ATCGAT	1 cut(s)	433
BsaAI	YACGTR	1 cut(s)	441
BsaBI	GATNNNNATC	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse118I	RCCGGY	1 cut(s)	274
Bse3DI	GCAATG	1 cut(s)	460
Bse8I	GATNNNNATC	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	347
BseCI	ATCGAT	1 cut(s)	433
BseDI	CCNNGG	1 cut(s)	25
BseGI	GGATG	3 cut(s)	493, 525, 529
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	1 cut(s)	590
BseRI	GAGGAG	1 cut(s)	355
BseX3I	CGGCCG	1 cut(s)	279
BseXI	GCAGC	3 cut(s)	25, 123, 238
Bsh1285I	CGRYCG	2 cut(s)	232, 282
BshFI	GGCC	2 cut(s)	281, 390
BshVI	ATCGAT	1 cut(s)	433
BsiEI	CGRYCG	2 cut(s)	232, 282
BsiHKCI	CYCGRG	1 cut(s)	289
BsiSI	CCGG	2 cut(s)	27, 275
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	196
BsnI	GGCC	2 cut(s)	281, 390
BsoBI	CYCGRG	1 cut(s)	289
Bsp119I	TTCGAA	1 cut(s)	561
Bsp143I	GATC	3 cut(s)	29, 244, 262
BspACI	CCGC	5 cut(s)	59, 114, 132, 272, 278
BspANI	GGCC	2 cut(s)	281, 390
BspCNI	CTCAG	1 cut(s)	589
BspDI	ATCGAT	1 cut(s)	433
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	2 cut(s)	85, 344
BspPI	GGATC	1 cut(s)	37
BspT104I	TTCGAA	1 cut(s)	561
BsrDI	GCAATG	1 cut(s)	460
BsrFI	RCCGGY	1 cut(s)	274
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	25
BssMI	GATC	3 cut(s)	29, 244, 262
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	2 cut(s)	107, 233
BstBAI	YACGTR	1 cut(s)	441
BstBI	TTCGAA	1 cut(s)	561
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	2 cut(s)	321, 576
BstEII	GGTNACC	1 cut(s)	502
BstF5I	GGATG	3 cut(s)	493, 525, 529
BstKTI	GATC	3 cut(s)	32, 247, 265
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	3 cut(s)	29, 244, 262
BstMCI	CGRYCG	2 cut(s)	232, 282
BstMWI	GCNNNNNNNGC	1 cut(s)	404
BstNI	CCWGG	1 cut(s)	347
BstPI	GGTNACC	1 cut(s)	502
BstSCI	CCNGG	2 cut(s)	25, 345
BstSNI	TACGTA	1 cut(s)	441
BstV1I	GCAGC	3 cut(s)	25, 123, 238
BstV2I	GAAGAC	1 cut(s)	314
BstZI	CGGCCG	1 cut(s)	279
Bsu15I	ATCGAT	1 cut(s)	433
BsuRI	GGCC	2 cut(s)	281, 390
BsuTUI	ATCGAT	1 cut(s)	433
BtsCI	GGATG	3 cut(s)	493, 525, 529
Cac8I	GCNNGC	1 cut(s)	276
CciI	TCATGA	1 cut(s)	259
Cfr10I	RCCGGY	1 cut(s)	274
ClaI	ATCGAT	1 cut(s)	433
Csp6I	GTAC	3 cut(s)	95, 117, 438
CviAII	CATG	1 cut(s)	260
CviQI	GTAC	3 cut(s)	95, 117, 438
DdeI	CTNAG	2 cut(s)	321, 576
DpnI	GATC	3 cut(s)	31, 246, 264
DpnII	GATC	3 cut(s)	29, 244, 262
EaeI	YGGCCR	2 cut(s)	279, 388
EagI	CGGCCG	1 cut(s)	279
EciI	GGCGGA	1 cut(s)	261
EclXI	CGGCCG	1 cut(s)	279
Eco105I	TACGTA	1 cut(s)	441
Eco52I	CGGCCG	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	289
Eco91I	GGTNACC	1 cut(s)	502
EcoO65I	GGTNACC	1 cut(s)	502
EcoRII	CCWGG	1 cut(s)	345
FaeI	CATG	1 cut(s)	263
FaiI	YATR	7 cut(s)	80, 261, 267, 327, 356, 387, 444
FalI	AAGNNNNNCTT	2 cut(s)	84, 116
FatI	CATG	1 cut(s)	259
FbaI	TGATCA	1 cut(s)	262
FblI	GTMKAC	1 cut(s)	170
Fnu4HI	GCNGC	5 cut(s)	39, 60, 112, 252, 279
FokI	GGATG	3 cut(s)	500, 516, 532
Fsp4HI	GCNGC	5 cut(s)	39, 60, 112, 252, 279
FspBI	CTAG	1 cut(s)	604
GluI	GCNGC	5 cut(s)	39, 60, 112, 252, 279
GsuI	CTGGAG	1 cut(s)	397
HaeIII	GGCC	2 cut(s)	281, 390
HapII	CCGG	2 cut(s)	27, 275
Hin1II	CATG	1 cut(s)	263
HincII	GTYRAC	1 cut(s)	171
HindII	GTYRAC	1 cut(s)	171
HinfI	GANTC	2 cut(s)	256, 574
HpaII	CCGG	2 cut(s)	27, 275
HphI	GGTGA	3 cut(s)	63, 146, 514
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	4 cut(s)	241, 336, 553, 579
Hpy188III	TCNNGA	2 cut(s)	260, 571
Hpy8I	GTNNAC	1 cut(s)	171
Hpy99I	CGWCG	1 cut(s)	175
HpyAV	CCTTC	3 cut(s)	440, 485, 509
HpyCH4III	ACNGT	2 cut(s)	107, 233
HpyCH4IV	ACGT	2 cut(s)	440, 475
HpyCH4V	TGCA	4 cut(s)	453, 472, 523, 583
HpyF10VI	GCNNNNNNNGC	1 cut(s)	404
HpyF3I	CTNAG	2 cut(s)	321, 576
HpySE526I	ACGT	2 cut(s)	440, 475
Hsp92II	CATG	1 cut(s)	263
KroI	GCCGGC	1 cut(s)	274
KroNI	GCCGGC	1 cut(s)	276
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	3 cut(s)	29, 244, 262
LmnI	GCTCC	1 cut(s)	342
LpnPI	CCDG	6 cut(s)	40, 288, 332, 359, 361, 433
Lsp1109I	GCAGC	3 cut(s)	25, 123, 238
LweI	GCATC	2 cut(s)	510, 570
MaeI	CTAG	1 cut(s)	604
MaeII	ACGT	2 cut(s)	440, 475
MaeIII	GTNAC	2 cut(s)	190, 502
MalI	GATC	3 cut(s)	31, 246, 264
MboI	GATC	3 cut(s)	29, 244, 262
MboII	GAAGA	4 cut(s)	13, 313, 316, 319
MlsI	TGGCCA	1 cut(s)	390
MluCI	AATT	4 cut(s)	413, 547, 556, 592
MluNI	TGGCCA	1 cut(s)	390
MlyI	GAGTC	1 cut(s)	568
MmeI	TCCRAC	1 cut(s)	576
MnlI	CCTC	2 cut(s)	99, 333
Mox20I	TGGCCA	1 cut(s)	390
MreI	CGCCGGCG	1 cut(s)	274
MroNI	GCCGGC	1 cut(s)	274
MscI	TGGCCA	1 cut(s)	390
MseI	TTAA	3 cut(s)	216, 459, 479
MslI	CAYNNNNRTG	1 cut(s)	500
Msp20I	TGGCCA	1 cut(s)	390
MspA1I	CMGCKG	2 cut(s)	38, 114
MspI	CCGG	2 cut(s)	27, 275
MspR9I	CCNGG	2 cut(s)	27, 347
MvaI	CCWGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	1 cut(s)	404
NaeI	GCCGGC	1 cut(s)	276
NciI	CCSGG	1 cut(s)	27
NdeII	GATC	3 cut(s)	29, 244, 262
NgoMIV	GCCGGC	1 cut(s)	274
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	2 cut(s)	85, 344
NmuCI	GTSAC	1 cut(s)	502
NspV	TTCGAA	1 cut(s)	561
PagI	TCATGA	1 cut(s)	259
PdiI	GCCGGC	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	256
PkrI	GCNGC	5 cut(s)	40, 61, 113, 253, 280
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
Ppu21I	YACGTR	1 cut(s)	441
Psp1406I	AACGTT	1 cut(s)	475
Psp6I	CCWGG	1 cut(s)	345
PspEI	GGTNACC	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	2 cut(s)	85, 344
PvuII	CAGCTG	1 cut(s)	38
RsaI	GTAC	3 cut(s)	96, 118, 439
RsaNI	GTAC	3 cut(s)	95, 117, 438
RseI	CAYNNNNRTG	1 cut(s)	500
SalI	GTCGAC	1 cut(s)	169
SaqAI	TTAA	3 cut(s)	216, 459, 479
SatI	GCNGC	5 cut(s)	39, 60, 112, 252, 279
Sau3AI	GATC	3 cut(s)	29, 244, 262
ScaI	AGTACT	1 cut(s)	96
SchI	GAGTC	1 cut(s)	568
ScrFI	CCNGG	2 cut(s)	27, 347
SetI	ASST	7 cut(s)	11, 40, 351, 428, 443, 478, 605
SfaNI	GCATC	2 cut(s)	510, 570
SfuI	TTCGAA	1 cut(s)	561
SgrAI	CRCCGGYG	1 cut(s)	274
SmiMI	CAYNNNNRTG	1 cut(s)	500
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
SnaBI	TACGTA	1 cut(s)	441
Sse9I	AATT	4 cut(s)	413, 547, 556, 592
SsiI	CCGC	5 cut(s)	59, 114, 132, 272, 278
SspMI	CTAG	1 cut(s)	604
StyD4I	CCNGG	2 cut(s)	25, 345
TaaI	ACNGT	2 cut(s)	107, 233
TaiI	ACGT	2 cut(s)	443, 478
TaqI	TCGA	4 cut(s)	170, 433, 537, 561
TasI	AATT	4 cut(s)	413, 547, 556, 592
TatI	WGTACW	1 cut(s)	94
TauI	GCSGC	2 cut(s)	62, 281
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	3 cut(s)	216, 459, 479
Tru9I	TTAA	3 cut(s)	216, 459, 479
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	3 cut(s)	38, 111, 251
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	3 cut(s)	314, 459, 504
XapI	RAATTY	1 cut(s)	413
XcmI	CCANNNNNNNNNTGG	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	170
XspI	CTAG	1 cut(s)	604
ZrmI	AGTACT	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.