Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0014953

Physical Location & Seq

Genomic Coordinates Forward (+)

616602 .. 619344

Gene Structure 2743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1008800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTTCTTTCCTTGCTCCTCATCAGCTAATTATCCAAACCCTAACTCCACAAATACAGATCATCATCATATGGGAAGCTCTCACGTTTACACGAATAACTTTGATGGGCGTGTTGATCAAACTTCAGATGGGTTGTTGCGCTTGAGTTCGACGACGAAAACGGAAGACAACGTTGGATCATCGTCAGGTGAAGTATTAGTTCATAAAGATGGTCATCCGTACCAACAATATTATCAGCAGTATTATCCGAGTGCAAATGCAAGCATGAATAATATTGTTGTTGGAGGTGATCAGAGCAGCGTCGATCCTCATCGGGCCAATAATAATTATTCAGAGAAAAAGAAGAAGGGGGAGAAGAAGATGAAGAAGCCAAAATATGCTTTTCAAACAAGAAGTCAGGTCGATGTACTTGACGATGGCTATCGGTGGAGAAAATACGGTCAAAAAGCTGTGAAAGCCAACAAGTTTCCCAGAAGCTACTACCGATGCACGTATCAAGGGTGCAATGTTAAAAAACAAGTCCAACGCCTAAACAAGGACGAAGGCATTGTGGTGACTACTTACGAAGGAATGCACACCCATCCCATCGACAAGCCATCTGATAATTTTGAACATATCTTGAGTCAGATGCAAATTTACACCCACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010053 GO:0010055 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0033554 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043620 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048583 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0090627 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

217

Amino Acids

24.76

Weight (kDa)

9.14

Isoelectric Point (pI)

40.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	138 - 195	6.8e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01970
fragaria_vesca	FvH4_6g53770
malus_domestica	MD09G1008800.v1.1 MD17G1001500.v1.1
prunus_persica	Prupe.3G308200_v2.0.a1
pyrus_communis	pycom111g00710
rosa_chinensis	RchiOBHm_Chr2g0175911
rosa_laevigata	RLG00000022363
rosa_multiflora	Rmu_ssc0000114.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076960
rosa_rugosa	Rorug02G0588400
rosa_samantha	Rh2AG667700 Rh2BG679200 Rh2CG642000 Rh2DG692700
rosa_wichuraiana	Rw2G054730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	171
AclWI	GGATC	2 cut(s)	184, 299
AcsI	RAATTY	1 cut(s)	633
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	2 cut(s)	221, 408
AfiI	CCNNNNNNNGG	1 cut(s)	535
AgsI	TTSAA	2 cut(s)	386, 611
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	4 cut(s)	26, 78, 449, 477
AluI	AGCT	4 cut(s)	26, 78, 449, 477
AlwI	GGATC	2 cut(s)	184, 299
AoxI	GGCC	1 cut(s)	315
ApeKI	GCWGC	1 cut(s)	297
ApoI	RAATTY	1 cut(s)	633
ArsI	GACNNNNNNTTYG	2 cut(s)	379, 411
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	315
AsuHPI	GGTGA	3 cut(s)	200, 299, 565
BbsI	GAAGAC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	309
BccI	CCATC	7 cut(s)	98, 122, 203, 410, 588, 593, 604
BclI	TGATCA	2 cut(s)	115, 289
BisI	GCNGC	1 cut(s)	298
BlsI	GCNGC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	315
BmsI	GCATC	2 cut(s)	476, 618
BpiI	GAAGAC	1 cut(s)	171
BpuEI	CTTGAG	2 cut(s)	163, 640
BsaAI	YACGTR	1 cut(s)	492
BsaBI	GATNNNNATC	4 cut(s)	63, 213, 309, 420
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	1 cut(s)	535
Bse3DI	GCAATG	1 cut(s)	511
Bse8I	GATNNNNATC	4 cut(s)	63, 213, 309, 420
BseGI	GGATG	2 cut(s)	214, 580
BseJI	GATNNNNATC	4 cut(s)	63, 213, 309, 420
BseLI	CCNNNNNNNGG	1 cut(s)	535
BseMI	GCAATG	1 cut(s)	511
BseRI	GAGGAG	1 cut(s)	7
BseXI	GCAGC	1 cut(s)	309
BshFI	GGCC	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	535
BsmI	GAATGC	1 cut(s)	576
BsnI	GGCC	1 cut(s)	317
Bsp143I	GATC	5 cut(s)	58, 115, 176, 289, 304
BspANI	GGCC	1 cut(s)	317
BspPI	GGATC	2 cut(s)	184, 299
BsrDI	GCAATG	1 cut(s)	511
BssMI	GATC	5 cut(s)	58, 115, 176, 289, 304
Bst4CI	ACNGT	1 cut(s)	440
BstBAI	YACGTR	1 cut(s)	492
BstC8I	GCNNGC	1 cut(s)	262
BstENI	CCTNNNNNAGG	1 cut(s)	533
BstF5I	GGATG	2 cut(s)	214, 580
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	5 cut(s)	61, 118, 179, 292, 307
BstMBI	GATC	5 cut(s)	58, 115, 176, 289, 304
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstV1I	GCAGC	1 cut(s)	309
BstV2I	GAAGAC	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	317
BtsCI	GGATG	2 cut(s)	214, 580
Cac8I	GCNNGC	1 cut(s)	262
CfoI	GCGC	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	315
CseI	GACGC	1 cut(s)	289
Csp6I	GTAC	2 cut(s)	220, 407
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	9 cut(s)	26, 78, 317, 370, 420, 449, 458, 477, 595
CviKI_1	RGCY	9 cut(s)	26, 78, 317, 370, 420, 449, 458, 477, 595
CviQI	GTAC	2 cut(s)	220, 407
DpnI	GATC	5 cut(s)	60, 117, 178, 291, 306
DpnII	GATC	5 cut(s)	58, 115, 176, 289, 304
Eco57I	CTGAAG	1 cut(s)	108
EcoNI	CCTNNNNNAGG	1 cut(s)	533
FaeI	CATG	1 cut(s)	268
FaiI	YATR	6 cut(s)	69, 71, 204, 266, 378, 615
FatI	CATG	1 cut(s)	264
FauNDI	CATATG	1 cut(s)	69
FbaI	TGATCA	2 cut(s)	115, 289
Fnu4HI	GCNGC	1 cut(s)	298
FokI	GGATG	2 cut(s)	201, 567
Fsp4HI	GCNGC	1 cut(s)	298
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	1 cut(s)	298
HaeIII	GGCC	1 cut(s)	317
HgaI	GACGC	1 cut(s)	289
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	268
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HinfI	GANTC	1 cut(s)	622
HphI	GGTGA	3 cut(s)	200, 299, 565
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	7 cut(s)	127, 249, 294, 334, 601, 627, 650
Hpy188III	TCNNGA	1 cut(s)	619
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	3 cut(s)	154, 157, 305
HpyAV	CCTTC	3 cut(s)	340, 536, 560
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4IV	ACGT	3 cut(s)	84, 171, 491
HpyCH4V	TGCA	6 cut(s)	254, 260, 489, 504, 574, 631
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpySE526I	ACGT	3 cut(s)	84, 171, 491
Hsp92II	CATG	1 cut(s)	268
HspAI	GCGC	1 cut(s)	139
Ksp22I	TGATCA	2 cut(s)	115, 289
Kzo9I	GATC	5 cut(s)	58, 115, 176, 289, 304
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	3 cut(s)	171, 383, 484
Lsp1109I	GCAGC	1 cut(s)	309
LweI	GCATC	2 cut(s)	476, 618
MaeII	ACGT	3 cut(s)	84, 171, 491
MaeIII	GTNAC	1 cut(s)	553
MalI	GATC	5 cut(s)	60, 117, 178, 291, 306
MboI	GATC	5 cut(s)	58, 115, 176, 289, 304
MboII	GAAGA	5 cut(s)	176, 355, 367, 370, 376
MluCI	AATT	4 cut(s)	28, 325, 604, 633
MlyI	GAGTC	1 cut(s)	631
MmeI	TCCRAC	3 cut(s)	154, 262, 547
MnlI	CCTC	3 cut(s)	28, 278, 318
MseI	TTAA	1 cut(s)	510
MslI	CAYNNNNRTG	2 cut(s)	207, 551
Mva1269I	GAATGC	1 cut(s)	576
MwoI	GCNNNNNNNGC	1 cut(s)	455
NdeI	CATATG	1 cut(s)	69
NdeII	GATC	5 cut(s)	58, 115, 176, 289, 304
NlaIII	CATG	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	553
PctI	GAATGC	1 cut(s)	576
PkrI	GCNGC	1 cut(s)	299
PleI	GAGTC	1 cut(s)	630
PpsI	GAGTC	1 cut(s)	630
Ppu21I	YACGTR	1 cut(s)	492
Psp1406I	AACGTT	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	315
RsaI	GTAC	2 cut(s)	221, 408
RsaNI	GTAC	2 cut(s)	220, 407
RseI	CAYNNNNRTG	2 cut(s)	207, 551
SaqAI	TTAA	1 cut(s)	510
SatI	GCNGC	1 cut(s)	298
Sau3AI	GATC	5 cut(s)	58, 115, 176, 289, 304
Sau96I	GGNCC	1 cut(s)	315
SchI	GAGTC	1 cut(s)	631
SfaNI	GCATC	2 cut(s)	476, 618
SmiMI	CAYNNNNRTG	2 cut(s)	207, 551
SmlI	CTYRAG	2 cut(s)	142, 619
SmoI	CTYRAG	2 cut(s)	142, 619
Sse9I	AATT	4 cut(s)	28, 325, 604, 633
SspI	AATATT	2 cut(s)	230, 274
TaaI	ACNGT	1 cut(s)	440
TaiI	ACGT	3 cut(s)	87, 174, 494
TaqI	TCGA	4 cut(s)	149, 303, 402, 588
TasI	AATT	4 cut(s)	28, 325, 604, 633
TatI	WGTACW	1 cut(s)	406
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TseFI	GTSAC	1 cut(s)	553
TseI	GCWGC	1 cut(s)	297
Tsp45I	GTSAC	1 cut(s)	553
TspDTI	ATGAA	3 cut(s)	191, 281, 377
TspGWI	ACGGA	2 cut(s)	176, 207
XagI	CCTNNNNNAGG	1 cut(s)	533
XapI	RAATTY	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.