Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014953

Physical Location & Seq

Genomic Coordinates Forward (+)

71075299 .. 71079194

Gene Structure 3896 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0588400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGATCCGTCGGCCTCCGCTTCTTCCGACATATACGAGATTTATCGCCGATACTGTGATATCAGAAGAGGAAATGGGTATGGGGAAGGTTACAGACAAAACGATGAATCACTGGTCGTCCAATATTCAAAGGAGGCATTAACTCAGCTCTTAAATCTGGTGGACTCAAAACTGCGTGCTAGGGTATCACTCTTTGATGAAATTGGCAAGCTAATGTCACAGCTTGACTTGGTGGTAGACTTTTCAGAATTCTCGCGCTTCTATGAGTTTGTTTTTTTCTTATGCCGCGAAAGTGGTCAGAAGAGTATCACCGTACCTAAGGCGATTTCTGCATGGAGAATAGTCTTAGCTGGGAGGTTTCGCTTGCTGAATCAATGGTGTGAATTTGTTGAGAAAAATCAGCGGCATAACATCTCTGAAGATACTTGGCGGCAAGTTTTAGCTTTTAGTCGGTGTGTACATGAAAATTTGGAAGGGTATGATCCTGAAGGAGCTTGGCCTGTCTTAATAGATGACTTCGTTGAGCATATGTACAGGTTTTCGGGATCTAATGTTAATTCTAACTTCTGTAACTGTGGCGACTCAGAATCCTGGTCATGCATATATGATGAACCTCTACCTGGCTTGAAGAGTTATCCTGGTTTGAAGAGGAAAATACCAGGGGATGTTGATATCGATGAAATGGAGTCCTCACCTACCTCCTTCCCGGAGTGTACAGACTTGAATCCTACATTAAGCTTTAAGAGGAGTCGGGTGATGTCATACGGGCCAGCAAATGATATACCAGGAAATCATGTAGACGAATGCATGGAAGTTATTAGACACAGCAGTCCATTAAATTCTTCCAAATCTCCATGTGCAGTTGAAGGTTGCCTGTCAAAGGGCTTTGCAGGGCTCTTACGGGAGAGGGGAGTTTCATTTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010053 GO:0010055 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015698 GO:0019219 GO:0019222 GO:0022622 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0033554 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043620 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048583 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0090627 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

308

Amino Acids

35.03

Weight (kDa)

5.14

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cullin_binding	PF03556	80 - 176	2.2e-30	Cullin binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01970
fragaria_vesca	FvH4_6g53770
malus_domestica	MD09G1008800.v1.1 MD17G1001500.v1.1
prunus_persica	Prupe.3G308200_v2.0.a1
pyrus_communis	pycom111g00710
rosa_chinensis	RchiOBHm_Chr2g0175911
rosa_laevigata	RLG00000022363
rosa_multiflora	Rmu_ssc0000114.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076960
rosa_rugosa	Rorug02G0588400
rosa_samantha	Rh2AG667700 Rh2BG679200 Rh2CG642000 Rh2DG692700
rosa_wichuraiana	Rw2G054730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	828
AccI	GTMKAC	2 cut(s)	237, 798
AccII	CGCG	2 cut(s)	256, 288
AciI	CCGC	4 cut(s)	18, 286, 403, 430
AclWI	GGATC	3 cut(s)	12, 476, 553
AcsI	RAATTY	4 cut(s)	248, 383, 466, 838
AcuI	CTGAAG	2 cut(s)	438, 507
AfaI	GTAC	4 cut(s)	315, 459, 533, 715
AfiI	CCNNNNNNNGG	2 cut(s)	620, 880
AgsI	TTSAA	5 cut(s)	129, 628, 646, 724, 866
AjnI	CCWGG	5 cut(s)	590, 619, 637, 658, 784
AluBI	AGCT	7 cut(s)	148, 211, 223, 350, 443, 494, 738
AluI	AGCT	7 cut(s)	148, 211, 223, 350, 443, 494, 738
AlwI	GGATC	3 cut(s)	12, 476, 553
AoxI	GGCC	3 cut(s)	12, 497, 767
ApoI	RAATTY	4 cut(s)	248, 383, 466, 838
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	767
AsuC2I	CCSGG	1 cut(s)	707
AsuHPI	GGTGA	3 cut(s)	301, 684, 766
AxyI	CCTNAGG	1 cut(s)	318
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	897
BciT130I	CCWGG	5 cut(s)	592, 621, 639, 660, 786
BcnI	CCSGG	1 cut(s)	707
BfaI	CTAG	1 cut(s)	180
BisI	GCNGC	3 cut(s)	286, 404, 431
BlsI	GCNGC	3 cut(s)	287, 405, 432
Bme1390I	CCNGG	6 cut(s)	592, 621, 639, 660, 707, 786
BmgT120I	GGNCC	1 cut(s)	767
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	6 cut(s)	592, 621, 639, 660, 707, 786
BpuMI	CCSGG	1 cut(s)	707
Bsa29I	ATCGAT	1 cut(s)	675
BsaJI	CCNNGG	1 cut(s)	659
Bsc4I	CCNNNNNNNGG	2 cut(s)	620, 880
Bse1I	ACTGG	1 cut(s)	117
Bse21I	CCTNAGG	1 cut(s)	318
BseBI	CCWGG	5 cut(s)	592, 621, 639, 660, 786
BseCI	ATCGAT	1 cut(s)	675
BseDI	CCNNGG	1 cut(s)	659
BseGI	GGATG	1 cut(s)	670
BseLI	CCNNNNNNNGG	2 cut(s)	620, 880
BseMII	CTCAG	2 cut(s)	158, 597
BseNI	ACTGG	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	760
BseYI	CCCAGC	1 cut(s)	350
BsgI	GTGCAG	1 cut(s)	879
Bsh1236I	CGCG	2 cut(s)	256, 288
BshFI	GGCC	3 cut(s)	14, 499, 769
BshVI	ATCGAT	1 cut(s)	675
BsiSI	CCGG	1 cut(s)	707
BslI	CCNNNNNNNGG	2 cut(s)	620, 880
BsmI	GAATGC	1 cut(s)	809
BsnI	GGCC	3 cut(s)	14, 499, 769
Bsp1286I	GDGCHC	1 cut(s)	897
Bsp1407I	TGTACA	3 cut(s)	457, 531, 713
Bsp143I	GATC	3 cut(s)	4, 481, 545
BspACI	CCGC	4 cut(s)	18, 286, 403, 430
BspANI	GGCC	3 cut(s)	14, 499, 769
BspCNI	CTCAG	2 cut(s)	157, 596
BspDI	ATCGAT	1 cut(s)	675
BspFNI	CGCG	2 cut(s)	256, 288
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	3 cut(s)	12, 476, 553
BsrGI	TGTACA	3 cut(s)	457, 531, 713
BsrI	ACTGG	1 cut(s)	117
BssECI	CCNNGG	1 cut(s)	659
BssMI	GATC	3 cut(s)	4, 481, 545
Bst2UI	CCWGG	5 cut(s)	592, 621, 639, 660, 786
Bst4CI	ACNGT	3 cut(s)	56, 313, 575
Bst6I	CTCTTC	4 cut(s)	61, 296, 623, 641
BstAUI	TGTACA	3 cut(s)	457, 531, 713
BstC8I	GCNNGC	4 cut(s)	177, 209, 365, 771
BstDEI	CTNAG	4 cut(s)	144, 318, 346, 583
BstENI	CCTNNNNNAGG	1 cut(s)	878
BstF5I	GGATG	1 cut(s)	670
BstFNI	CGCG	2 cut(s)	256, 288
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	3 cut(s)	7, 484, 548
BstMBI	GATC	3 cut(s)	4, 481, 545
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstNI	CCWGG	5 cut(s)	592, 621, 639, 660, 786
BstSCI	CCNGG	6 cut(s)	590, 619, 637, 658, 705, 784
BstUI	CGCG	2 cut(s)	256, 288
BstX2I	RGATCY	2 cut(s)	4, 545
BstYI	RGATCY	2 cut(s)	4, 545
Bsu15I	ATCGAT	1 cut(s)	675
Bsu36I	CCTNAGG	1 cut(s)	318
BsuRI	GGCC	3 cut(s)	14, 499, 769
BsuTUI	ATCGAT	1 cut(s)	675
BtsCI	GGATG	1 cut(s)	670
BtsIMutI	CAGTG	1 cut(s)	110
Cac8I	GCNNGC	4 cut(s)	177, 209, 365, 771
CfoI	GCGC	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	767
ClaI	ATCGAT	1 cut(s)	675
Csp6I	GTAC	4 cut(s)	314, 458, 532, 714
CviAII	CATG	6 cut(s)	333, 461, 597, 794, 808, 855
CviQI	GTAC	4 cut(s)	314, 458, 532, 714
DdeI	CTNAG	4 cut(s)	144, 318, 346, 583
DpnI	GATC	3 cut(s)	6, 483, 547
DpnII	GATC	3 cut(s)	4, 481, 545
DrdI	GACNNNNNNGTC	1 cut(s)	828
DseDI	GACNNNNNNGTC	1 cut(s)	828
Eam1104I	CTCTTC	4 cut(s)	61, 296, 623, 641
EarI	CTCTTC	4 cut(s)	61, 296, 623, 641
Eco24I	GRGCYC	1 cut(s)	897
Eco32I	GATATC	2 cut(s)	61, 673
Eco57I	CTGAAG	2 cut(s)	438, 507
Eco81I	CCTNAGG	1 cut(s)	318
EcoNI	CCTNNNNNAGG	1 cut(s)	878
EcoRI	GAATTC	1 cut(s)	248
EcoRII	CCWGG	5 cut(s)	590, 619, 637, 658, 784
EcoRV	GATATC	2 cut(s)	61, 673
EcoT22I	ATGCAT	2 cut(s)	602, 809
EcoT38I	GRGCYC	1 cut(s)	897
FaeI	CATG	6 cut(s)	336, 464, 600, 797, 811, 858
FatI	CATG	6 cut(s)	332, 460, 596, 793, 807, 854
FauNDI	CATATG	1 cut(s)	528
FblI	GTMKAC	2 cut(s)	237, 798
Fnu4HI	GCNGC	3 cut(s)	286, 404, 431
FokI	GGATG	1 cut(s)	677
FriOI	GRGCYC	1 cut(s)	897
Fsp4HI	GCNGC	3 cut(s)	286, 404, 431
FspBI	CTAG	1 cut(s)	180
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	3 cut(s)	286, 404, 431
GsaI	CCCAGC	1 cut(s)	354
HaeIII	GGCC	3 cut(s)	14, 499, 769
HapII	CCGG	1 cut(s)	707
HhaI	GCGC	1 cut(s)	258
Hin1II	CATG	6 cut(s)	336, 464, 600, 797, 811, 858
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HindIII	AAGCTT	1 cut(s)	736
HinfI	GANTC	8 cut(s)	107, 164, 370, 581, 587, 686, 724, 748
HpaII	CCGG	1 cut(s)	707
HphI	GGTGA	3 cut(s)	301, 684, 766
Hpy166II	GTNNAC	5 cut(s)	163, 238, 458, 714, 799
Hpy188I	TCNGA	6 cut(s)	28, 65, 247, 300, 418, 586
Hpy188III	TCNNGA	2 cut(s)	485, 543
Hpy8I	GTNNAC	5 cut(s)	163, 238, 458, 714, 799
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	5 cut(s)	80, 467, 482, 712, 860
HpyCH4III	ACNGT	3 cut(s)	56, 313, 575
HpyCH4V	TGCA	5 cut(s)	332, 600, 807, 860, 890
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	4 cut(s)	144, 318, 346, 583
Hsp92II	CATG	6 cut(s)	336, 464, 600, 797, 811, 858
HspAI	GCGC	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	4, 481, 545
LmnI	GCTCC	1 cut(s)	491
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	3 cut(s)	89, 216, 569
MalI	GATC	3 cut(s)	6, 483, 547
MboI	GATC	3 cut(s)	4, 481, 545
MboII	GAAGA	7 cut(s)	15, 78, 313, 431, 640, 658, 834
MflI	RGATCY	2 cut(s)	4, 545
MhlI	GDGCHC	1 cut(s)	897
MluCI	AATT	6 cut(s)	201, 248, 383, 466, 556, 838
MlyI	GAGTC	4 cut(s)	158, 575, 695, 757
MmeI	TCCRAC	1 cut(s)	51
Mph1103I	ATGCAT	2 cut(s)	602, 809
MseI	TTAA	7 cut(s)	140, 152, 506, 555, 734, 741, 836
MspA1I	CMGCKG	1 cut(s)	403
MspI	CCGG	1 cut(s)	707
MspR9I	CCNGG	6 cut(s)	592, 621, 639, 660, 707, 786
Mva1269I	GAATGC	1 cut(s)	809
MvaI	CCWGG	5 cut(s)	592, 621, 639, 660, 786
MvnI	CGCG	2 cut(s)	256, 288
MwoI	GCNNNNNNNGC	1 cut(s)	329
NciI	CCSGG	1 cut(s)	707
NdeI	CATATG	1 cut(s)	528
NdeII	GATC	3 cut(s)	4, 481, 545
NlaIII	CATG	6 cut(s)	336, 464, 600, 797, 811, 858
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	216
NsiI	ATGCAT	2 cut(s)	602, 809
PctI	GAATGC	1 cut(s)	809
PfeI	GAWTC	4 cut(s)	107, 370, 587, 724
PfoI	TCCNGGA	1 cut(s)	705
PkrI	GCNGC	3 cut(s)	287, 405, 432
PleI	GAGTC	4 cut(s)	158, 575, 694, 756
PpsI	GAGTC	4 cut(s)	158, 575, 694, 756
Psp6I	CCWGG	5 cut(s)	590, 619, 637, 658, 784
PspFI	CCCAGC	1 cut(s)	350
PspGI	CCWGG	5 cut(s)	590, 619, 637, 658, 784
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	767
PsuI	RGATCY	2 cut(s)	4, 545
RsaI	GTAC	4 cut(s)	315, 459, 533, 715
RsaNI	GTAC	4 cut(s)	314, 458, 532, 714
SaqAI	TTAA	7 cut(s)	140, 152, 506, 555, 734, 741, 836
SatI	GCNGC	3 cut(s)	286, 404, 431
Sau3AI	GATC	3 cut(s)	4, 481, 545
Sau96I	GGNCC	1 cut(s)	767
SchI	GAGTC	4 cut(s)	158, 575, 695, 757
ScrFI	CCNGG	6 cut(s)	592, 621, 639, 660, 707, 786
SduI	GDGCHC	1 cut(s)	897
Sse9I	AATT	6 cut(s)	201, 248, 383, 466, 556, 838
SsiI	CCGC	4 cut(s)	18, 286, 403, 430
SspI	AATATT	1 cut(s)	125
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	6 cut(s)	590, 619, 637, 658, 705, 784
TaaI	ACNGT	3 cut(s)	56, 313, 575
TaqI	TCGA	1 cut(s)	675
TasI	AATT	6 cut(s)	201, 248, 383, 466, 556, 838
TatI	WGTACW	3 cut(s)	457, 531, 713
TauI	GCSGC	3 cut(s)	288, 406, 433
TfiI	GAWTC	4 cut(s)	107, 370, 587, 724
Tru1I	TTAA	7 cut(s)	140, 152, 506, 555, 734, 741, 836
Tru9I	TTAA	7 cut(s)	140, 152, 506, 555, 734, 741, 836
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	216
Tsp45I	GTSAC	1 cut(s)	216
TspDTI	ATGAA	6 cut(s)	120, 213, 477, 624, 693, 906
TspRI	CASTG	1 cut(s)	117
XagI	CCTNNNNNAGG	1 cut(s)	878
XapI	RAATTY	4 cut(s)	248, 383, 466, 838
XmiI	GTMKAC	2 cut(s)	237, 798
XspI	CTAG	1 cut(s)	180
Zsp2I	ATGCAT	2 cut(s)	602, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.