Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0014953

Physical Location & Seq

Genomic Coordinates Forward (+)

485472 .. 490948

Gene Structure 5477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g00710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGATGAAGCCGCCACCATTATTCCAGCAAGCGCCATCAACCCTAGATAGCCCATCATGGAGACGTATCAAATGTTCTTTCCTTGCTCCTCATCAGCTAATTATCCAAACCCTAATTCCACAAATACAGATCGATCATCATATGGGAAGCTCTAACGTTTACACGAATAACTTTGATGGGCGTGTTGATCAAACTTCAGATGGGTTGTTGCGCTTGAGATCGAAGTCGAAAACGGAAAACCACGTTGGATCATCGTCAGGTGAAGTATTAGTTCATAAAGATGGTCATCCGCATCAACAATATTATCAGCAGTATTATCCGAGTGCAAATGCAAGCATGAATAATATTGTTGTTGGAGCTGATCAGAGCAGCGTCGATCCTCATCGGGCCAATAATAATTATTCAGAGAAAAAGAATAAGGGGGAGAAGAAGATGAAGAAGCCAAAATATGCTTTTCAAACAAGAAGTCAGGTCGATGTCCTTGACGATGGCTATCGGTGGAGAAAATACGGTCAAAAAGCTGTGAAAGCCAGCAAGTTTCCCAGAAGCTACTACCGATGCACGTATCAAGGGTGCAACGTTAAAAAACAAGTCCAACGCCTAAACAAGGACGAAGGCATTGTGGTGACCACTTACGAAGGAACGCACACCCATCCCATCGACAAGCCTTCTGATAATTTTGAACATATCTTGAGTCAGATGCAAATTTACACCCCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010053 GO:0010055 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0033554 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043620 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048583 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0090627 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

241

Amino Acids

27.62

Weight (kDa)

9.5

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	162 - 219	3.3e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01970
fragaria_vesca	FvH4_6g53770
malus_domestica	MD09G1008800.v1.1 MD17G1001500.v1.1
prunus_persica	Prupe.3G308200_v2.0.a1
pyrus_communis	pycom111g00710
rosa_chinensis	RchiOBHm_Chr2g0175911
rosa_laevigata	RLG00000022363
rosa_multiflora	Rmu_ssc0000114.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076960
rosa_rugosa	Rorug02G0588400
rosa_samantha	Rh2AG667700 Rh2BG679200 Rh2CG642000 Rh2DG692700
rosa_wichuraiana	Rw2G054730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	11, 290
AclI	AACGTT	2 cut(s)	156, 579
AclWI	GGATC	2 cut(s)	256, 371
AcsI	RAATTY	1 cut(s)	705
AcuI	CTGAAG	1 cut(s)	180
AfiI	CCNNNNNNNGG	1 cut(s)	607
AgsI	TTSAA	2 cut(s)	458, 683
AjuI	GAANNNNNNNTTGG	4 cut(s)	99, 131, 228, 260
AluBI	AGCT	5 cut(s)	97, 150, 359, 521, 549
AluI	AGCT	5 cut(s)	97, 150, 359, 521, 549
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	2 cut(s)	256, 371
AoxI	GGCC	1 cut(s)	387
ApeKI	GCWGC	1 cut(s)	369
ApoI	RAATTY	1 cut(s)	705
ArsI	GACNNNNNNTTYG	2 cut(s)	451, 483
AspLEI	GCGC	2 cut(s)	34, 213
AspS9I	GGNCC	1 cut(s)	387
AsuHPI	GGTGA	2 cut(s)	272, 637
BbvI	GCAGC	1 cut(s)	381
BccI	CCATC	8 cut(s)	43, 61, 170, 194, 275, 482, 660, 665
BclI	TGATCA	2 cut(s)	187, 361
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	44
BfoI	RGCGCY	1 cut(s)	35
BisI	GCNGC	2 cut(s)	11, 370
BlsI	GCNGC	2 cut(s)	12, 371
BmgT120I	GGNCC	1 cut(s)	387
BmsI	GCATC	3 cut(s)	301, 548, 690
BpuEI	CTTGAG	2 cut(s)	235, 712
Bsa29I	ATCGAT	1 cut(s)	132
BsaAI	YACGTR	1 cut(s)	564
BsaBI	GATNNNNATC	3 cut(s)	285, 381, 492
Bsc4I	CCNNNNNNNGG	1 cut(s)	607
Bse8I	GATNNNNATC	3 cut(s)	285, 381, 492
BseCI	ATCGAT	1 cut(s)	132
BseGI	GGATG	2 cut(s)	286, 652
BseJI	GATNNNNATC	3 cut(s)	285, 381, 492
BseLI	CCNNNNNNNGG	1 cut(s)	607
BseRI	GAGGAG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	381
BshFI	GGCC	1 cut(s)	389
BshVI	ATCGAT	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	607
BsmAI	GTCTC	1 cut(s)	55
BsmBI	CGTCTC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	389
Bsp143I	GATC	7 cut(s)	129, 133, 187, 218, 248, 361, 376
BspACI	CCGC	2 cut(s)	11, 290
BspANI	GGCC	1 cut(s)	389
BspDI	ATCGAT	1 cut(s)	132
BspPI	GGATC	2 cut(s)	256, 371
BssMI	GATC	7 cut(s)	129, 133, 187, 218, 248, 361, 376
Bst4CI	ACNGT	1 cut(s)	512
BstBAI	YACGTR	1 cut(s)	564
BstC8I	GCNNGC	3 cut(s)	30, 334, 532
BstEII	GGTNACC	1 cut(s)	625
BstENI	CCTNNNNNAGG	1 cut(s)	605
BstF5I	GGATG	2 cut(s)	286, 652
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	2 cut(s)	34, 213
BstKTI	GATC	7 cut(s)	132, 136, 190, 221, 251, 364, 379
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	7 cut(s)	129, 133, 187, 218, 248, 361, 376
BstMWI	GCNNNNNNNGC	1 cut(s)	527
BstPI	GGTNACC	1 cut(s)	625
BstV1I	GCAGC	1 cut(s)	381
Bsu15I	ATCGAT	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	389
BsuTUI	ATCGAT	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	286, 652
Cac8I	GCNNGC	3 cut(s)	30, 334, 532
CfoI	GCGC	2 cut(s)	34, 213
Cfr13I	GGNCC	1 cut(s)	387
ClaI	ATCGAT	1 cut(s)	132
CseI	GACGC	1 cut(s)	361
CviAII	CATG	2 cut(s)	57, 337
DpnI	GATC	7 cut(s)	131, 135, 189, 220, 250, 363, 378
DpnII	GATC	7 cut(s)	129, 133, 187, 218, 248, 361, 376
Eco57I	CTGAAG	1 cut(s)	180
Eco91I	GGTNACC	1 cut(s)	625
EcoNI	CCTNNNNNAGG	1 cut(s)	605
EcoO65I	GGTNACC	1 cut(s)	625
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	2 cut(s)	60, 340
FaiI	YATR	7 cut(s)	58, 141, 143, 276, 338, 450, 687
FatI	CATG	2 cut(s)	56, 336
FauNDI	CATATG	1 cut(s)	141
FbaI	TGATCA	2 cut(s)	187, 361
Fnu4HI	GCNGC	2 cut(s)	11, 370
FokI	GGATG	2 cut(s)	273, 639
Fsp4HI	GCNGC	2 cut(s)	11, 370
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	2 cut(s)	33, 212
GluI	GCNGC	2 cut(s)	11, 370
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	1 cut(s)	389
HgaI	GACGC	1 cut(s)	361
HhaI	GCGC	2 cut(s)	34, 213
Hin1II	CATG	2 cut(s)	60, 340
Hin6I	GCGC	2 cut(s)	32, 211
HinP1I	GCGC	2 cut(s)	32, 211
HinfI	GANTC	1 cut(s)	694
HphI	GGTGA	2 cut(s)	272, 637
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	6 cut(s)	199, 321, 366, 406, 673, 699
Hpy188III	TCNNGA	1 cut(s)	691
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	3 cut(s)	608, 632, 678
HpyCH4III	ACNGT	1 cut(s)	512
HpyCH4IV	ACGT	5 cut(s)	64, 156, 243, 563, 579
HpyCH4V	TGCA	5 cut(s)	326, 332, 561, 576, 703
HpyF10VI	GCNNNNNNNGC	1 cut(s)	527
HpySE526I	ACGT	5 cut(s)	64, 156, 243, 563, 579
Hsp92II	CATG	2 cut(s)	60, 340
HspAI	GCGC	2 cut(s)	32, 211
Ksp22I	TGATCA	2 cut(s)	187, 361
Kzo9I	GATC	7 cut(s)	129, 133, 187, 218, 248, 361, 376
LmnI	GCTCC	2 cut(s)	91, 356
LpnPI	CCDG	5 cut(s)	38, 243, 455, 544, 556
Lsp1109I	GCAGC	1 cut(s)	381
LweI	GCATC	3 cut(s)	301, 548, 690
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	5 cut(s)	64, 156, 243, 563, 579
MaeIII	GTNAC	1 cut(s)	625
MalI	GATC	7 cut(s)	131, 135, 189, 220, 250, 363, 378
MboI	GATC	7 cut(s)	129, 133, 187, 218, 248, 361, 376
MboII	GAAGA	3 cut(s)	439, 442, 448
MluCI	AATT	5 cut(s)	99, 114, 397, 676, 705
MlyI	GAGTC	1 cut(s)	703
MmeI	TCCRAC	3 cut(s)	226, 334, 619
MnlI	CCTC	2 cut(s)	99, 390
MseI	TTAA	1 cut(s)	582
MslI	CAYNNNNRTG	2 cut(s)	279, 623
MwoI	GCNNNNNNNGC	1 cut(s)	527
NdeI	CATATG	1 cut(s)	141
NdeII	GATC	7 cut(s)	129, 133, 187, 218, 248, 361, 376
NlaIII	CATG	2 cut(s)	60, 340
NmuCI	GTSAC	1 cut(s)	625
PkrI	GCNGC	2 cut(s)	12, 371
PleI	GAGTC	1 cut(s)	702
PpsI	GAGTC	1 cut(s)	702
Ppu21I	YACGTR	1 cut(s)	564
Psp1406I	AACGTT	2 cut(s)	156, 579
PspEI	GGTNACC	1 cut(s)	625
PspPI	GGNCC	1 cut(s)	387
PsrI	GAACNNNNNNTAC	2 cut(s)	58, 90
RseI	CAYNNNNRTG	2 cut(s)	279, 623
SaqAI	TTAA	1 cut(s)	582
SatI	GCNGC	2 cut(s)	11, 370
Sau3AI	GATC	7 cut(s)	129, 133, 187, 218, 248, 361, 376
Sau96I	GGNCC	1 cut(s)	387
SchI	GAGTC	1 cut(s)	703
SfaNI	GCATC	3 cut(s)	301, 548, 690
SmiMI	CAYNNNNRTG	2 cut(s)	279, 623
SmlI	CTYRAG	2 cut(s)	214, 691
SmoI	CTYRAG	2 cut(s)	214, 691
Sse9I	AATT	5 cut(s)	99, 114, 397, 676, 705
SsiI	CCGC	2 cut(s)	11, 290
SspI	AATATT	2 cut(s)	302, 346
SspMI	CTAG	1 cut(s)	44
TaaI	ACNGT	1 cut(s)	512
TaiI	ACGT	5 cut(s)	67, 159, 246, 566, 582
TaqI	TCGA	6 cut(s)	132, 221, 227, 375, 474, 660
TasI	AATT	5 cut(s)	99, 114, 397, 676, 705
TauI	GCSGC	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TseFI	GTSAC	1 cut(s)	625
TseI	GCWGC	1 cut(s)	369
Tsp45I	GTSAC	1 cut(s)	625
TspDTI	ATGAA	4 cut(s)	20, 263, 353, 449
TspGWI	ACGGA	1 cut(s)	248
XagI	CCTNNNNNAGG	1 cut(s)	605
XapI	RAATTY	1 cut(s)	705
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.