Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0014953

Physical Location & Seq

Genomic Coordinates Reverse (-)

26854111 .. 26856509

Gene Structure 2399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G308200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAGAAGTATCAAATGTTCTTCCCTTGCTCCTCTTCTACATCATCAGCAAACTATGATCCCATGATCCCTATCTCTGCAACAAATAATATTACTACAGATGGTCATCATATGGGAATGGGAAGCTCTCAAGTTTACAACTACTTTGACGGCCGCGATCAAAGTTCAAATGGACTTTTGGGGTTGAGATCATCAGCAGGAAACCACGTTGGGAGAGAAGTTTTGATAAACAAAGATCATCATCAGTACCTGCAGCAGCAATATTCTGATCTGACTACTACTGCAAGTGCAAACATTAATATTAATAATGTTATTGTTGGAGCTGATCAAAATCCTCATGAGGCCACTAATTCAGGAAACAAGAACAAGGGGGAGAAGAAGACGAGAAAGCCCAAATATGCTTTTCAAACAAGAAGTCAGGTTGATATACTTGACGATGGCTACCGGTGGAGAAAATATGGTCAAAAGGCGGTCAAAAACAACAAATTTCCCAGAAGCTACTATCGATGCACGTACCAAGGGTGCAATGTGAAAAAGCAAGTCCAACGCCTAACCAAGGATGAAGGCATTGTGGTGACCACTTACGAAGGGATGCACACCCATCCAATTGAGAAGCCTTCCGATAACTTTGAACATATCTTGAATCAGATGCAAATCTACACCCCCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010053 GO:0010055 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0033554 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043620 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048583 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0090627 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

224

Amino Acids

25.42

Weight (kDa)

9.1

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01970
fragaria_vesca	FvH4_6g53770
malus_domestica	MD09G1008800.v1.1 MD17G1001500.v1.1
prunus_persica	Prupe.3G308200_v2.0.a1
pyrus_communis	pycom111g00710
rosa_chinensis	RchiOBHm_Chr2g0175911
rosa_laevigata	RLG00000022363
rosa_multiflora	Rmu_ssc0000114.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076960
rosa_rugosa	Rorug02G0588400
rosa_samantha	Rh2AG667700 Rh2BG679200 Rh2CG642000 Rh2DG692700
rosa_wichuraiana	Rw2G054730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	258
AccII	CGCG	1 cut(s)	156
AciI	CCGC	2 cut(s)	154, 470
AclWI	GGATC	2 cut(s)	53, 61
AcoI	YGGCCR	1 cut(s)	151
AcsI	RAATTY	1 cut(s)	485
AfaI	GTAC	2 cut(s)	248, 515
AfiI	CCNNNNNNNGG	1 cut(s)	556
AgeI	ACCGGT	1 cut(s)	444
AgsI	TTSAA	4 cut(s)	168, 407, 632, 643
AluBI	AGCT	3 cut(s)	126, 323, 498
AluI	AGCT	3 cut(s)	126, 323, 498
AlwI	GGATC	2 cut(s)	53, 61
AlwNI	CAGNNNCTG	1 cut(s)	250
AoxI	GGCC	2 cut(s)	151, 342
ApeKI	GCWGC	2 cut(s)	253, 256
ApoI	RAATTY	1 cut(s)	485
ArsI	GACNNNNNNTTYG	2 cut(s)	400, 432
AseI	ATTAAT	2 cut(s)	297, 303
AsiGI	ACCGGT	1 cut(s)	444
AsuHPI	GGTGA	1 cut(s)	586
BbsI	GAAGAC	1 cut(s)	386
BbvI	GCAGC	2 cut(s)	265, 268
BccI	CCATC	3 cut(s)	95, 431, 609
BceAI	ACGGC	1 cut(s)	166
BclI	TGATCA	1 cut(s)	325
BfmI	CTRYAG	2 cut(s)	96, 251
BfuAI	ACCTGC	1 cut(s)	258
BisI	GCNGC	3 cut(s)	154, 254, 257
BlsI	GCNGC	3 cut(s)	155, 255, 258
BmsI	GCATC	3 cut(s)	497, 582, 639
BpiI	GAAGAC	1 cut(s)	386
BpuEI	CTTGAG	1 cut(s)	114
Bsa29I	ATCGAT	1 cut(s)	505
BsaAI	YACGTR	1 cut(s)	513
BsaBI	GATNNNNATC	5 cut(s)	71, 105, 240, 330, 653
BsaJI	CCNNGG	2 cut(s)	517, 555
BsaWI	WCCGGW	1 cut(s)	444
Bsc4I	CCNNNNNNNGG	1 cut(s)	556
Bse118I	RCCGGY	1 cut(s)	444
Bse3DI	GCAATG	1 cut(s)	532
Bse8I	GATNNNNATC	5 cut(s)	71, 105, 240, 330, 653
BseCI	ATCGAT	1 cut(s)	505
BseDI	CCNNGG	2 cut(s)	517, 555
BseGI	GGATG	3 cut(s)	565, 597, 601
BseJI	GATNNNNATC	5 cut(s)	71, 105, 240, 330, 653
BseLI	CCNNNNNNNGG	1 cut(s)	556
BseMI	GCAATG	1 cut(s)	532
BseRI	GAGGAG	1 cut(s)	22
BseX3I	CGGCCG	1 cut(s)	151
BseXI	GCAGC	2 cut(s)	265, 268
Bsh1236I	CGCG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	2 cut(s)	153, 344
BshTI	ACCGGT	1 cut(s)	444
BshVI	ATCGAT	1 cut(s)	505
BsiEI	CGRYCG	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	445
BslI	CCNNNNNNNGG	1 cut(s)	556
BsnI	GGCC	2 cut(s)	153, 344
Bsp143I	GATC	7 cut(s)	58, 66, 157, 188, 235, 268, 325
BspACI	CCGC	2 cut(s)	154, 470
BspANI	GGCC	2 cut(s)	153, 344
BspDI	ATCGAT	1 cut(s)	505
BspFNI	CGCG	1 cut(s)	156
BspHI	TCATGA	1 cut(s)	337
BspMAI	CTGCAG	1 cut(s)	255
BspMI	ACCTGC	1 cut(s)	258
BspPI	GGATC	2 cut(s)	53, 61
BsrDI	GCAATG	1 cut(s)	532
BsrFI	RCCGGY	1 cut(s)	444
BssAI	RCCGGY	1 cut(s)	444
BssECI	CCNNGG	2 cut(s)	517, 555
BssMI	GATC	7 cut(s)	58, 66, 157, 188, 235, 268, 325
BssT1I	CCWWGG	2 cut(s)	517, 555
Bst6I	CTCTTC	1 cut(s)	40
BstBAI	YACGTR	1 cut(s)	513
BstEII	GGTNACC	1 cut(s)	574
BstENI	CCTNNNNNAGG	1 cut(s)	554
BstF5I	GGATG	3 cut(s)	565, 597, 601
BstFNI	CGCG	1 cut(s)	156
BstKTI	GATC	7 cut(s)	61, 69, 160, 191, 238, 271, 328
BstMBI	GATC	7 cut(s)	58, 66, 157, 188, 235, 268, 325
BstMCI	CGRYCG	1 cut(s)	154
BstPI	GGTNACC	1 cut(s)	574
BstSFI	CTRYAG	2 cut(s)	96, 251
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	265, 268
BstV2I	GAAGAC	1 cut(s)	386
BstZI	CGGCCG	1 cut(s)	151
Bsu15I	ATCGAT	1 cut(s)	505
BsuRI	GGCC	2 cut(s)	153, 344
BsuTUI	ATCGAT	1 cut(s)	505
BtsCI	GGATG	3 cut(s)	565, 597, 601
BveI	ACCTGC	1 cut(s)	258
CaiI	CAGNNNCTG	1 cut(s)	250
CciI	TCATGA	1 cut(s)	337
Cfr10I	RCCGGY	1 cut(s)	444
ClaI	ATCGAT	1 cut(s)	505
Csp6I	GTAC	2 cut(s)	247, 514
CspAI	ACCGGT	1 cut(s)	444
CviAII	CATG	2 cut(s)	64, 338
CviJI	RGCY	8 cut(s)	126, 153, 323, 344, 391, 441, 498, 616
CviKI_1	RGCY	8 cut(s)	126, 153, 323, 344, 391, 441, 498, 616
CviQI	GTAC	2 cut(s)	247, 514
DpnI	GATC	7 cut(s)	60, 68, 159, 190, 237, 270, 327
DpnII	GATC	7 cut(s)	58, 66, 157, 188, 235, 268, 325
EaeI	YGGCCR	1 cut(s)	151
EagI	CGGCCG	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
EclXI	CGGCCG	1 cut(s)	151
Eco130I	CCWWGG	2 cut(s)	517, 555
Eco52I	CGGCCG	1 cut(s)	151
Eco91I	GGTNACC	1 cut(s)	574
EcoNI	CCTNNNNNAGG	1 cut(s)	554
EcoO65I	GGTNACC	1 cut(s)	574
EcoT14I	CCWWGG	2 cut(s)	517, 555
ErhI	CCWWGG	2 cut(s)	517, 555
FaeI	CATG	2 cut(s)	67, 341
FaiI	YATR	9 cut(s)	57, 65, 111, 113, 339, 399, 428, 459, 636
FatI	CATG	2 cut(s)	63, 337
FauNDI	CATATG	1 cut(s)	111
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	3 cut(s)	154, 254, 257
FokI	GGATG	3 cut(s)	572, 588, 604
Fsp4HI	GCNGC	3 cut(s)	154, 254, 257
GluI	GCNGC	3 cut(s)	154, 254, 257
HaeIII	GGCC	2 cut(s)	153, 344
HapII	CCGG	1 cut(s)	445
Hin1II	CATG	2 cut(s)	67, 341
HinfI	GANTC	1 cut(s)	643
HpaII	CCGG	1 cut(s)	445
HphI	GGTGA	1 cut(s)	586
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	5 cut(s)	268, 273, 622, 648, 671
Hpy188III	TCNNGA	3 cut(s)	338, 354, 640
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	3 cut(s)	557, 581, 627
HpyCH4IV	ACGT	2 cut(s)	207, 512
HpyCH4V	TGCA	8 cut(s)	80, 253, 284, 290, 510, 525, 595, 652
HpySE526I	ACGT	2 cut(s)	207, 512
Hsp92II	CATG	2 cut(s)	67, 341
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	7 cut(s)	58, 66, 157, 188, 235, 268, 325
LmnI	GCTCC	2 cut(s)	35, 320
LpnPI	CCDG	6 cut(s)	183, 263, 339, 404, 458, 505
Lsp1109I	GCAGC	2 cut(s)	265, 268
LweI	GCATC	3 cut(s)	497, 582, 639
MaeII	ACGT	2 cut(s)	207, 512
MaeIII	GTNAC	1 cut(s)	574
MalI	GATC	7 cut(s)	60, 68, 159, 190, 237, 270, 327
MboI	GATC	7 cut(s)	58, 66, 157, 188, 235, 268, 325
MboII	GAAGA	4 cut(s)	13, 27, 388, 391
MfeI	CAATTG	1 cut(s)	606
MluCI	AATT	3 cut(s)	349, 485, 606
MmeI	TCCRAC	2 cut(s)	298, 568
MnlI	CCTC	3 cut(s)	43, 334, 345
MseI	TTAA	2 cut(s)	297, 303
MslI	CAYNNNNRTG	1 cut(s)	572
MspI	CCGG	1 cut(s)	445
MunI	CAATTG	1 cut(s)	606
MvnI	CGCG	1 cut(s)	156
NdeI	CATATG	1 cut(s)	111
NdeII	GATC	7 cut(s)	58, 66, 157, 188, 235, 268, 325
NlaIII	CATG	2 cut(s)	67, 341
NmuCI	GTSAC	1 cut(s)	574
PagI	TCATGA	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	643
PinAI	ACCGGT	1 cut(s)	444
PkrI	GCNGC	3 cut(s)	155, 255, 258
Ppu21I	YACGTR	1 cut(s)	513
PshBI	ATTAAT	2 cut(s)	297, 303
PspEI	GGTNACC	1 cut(s)	574
PsrI	GAACNNNNNNTAC	1 cut(s)	34
PstI	CTGCAG	1 cut(s)	255
PstNI	CAGNNNCTG	1 cut(s)	250
RsaI	GTAC	2 cut(s)	248, 515
RsaNI	GTAC	2 cut(s)	247, 514
RseI	CAYNNNNRTG	1 cut(s)	572
SaqAI	TTAA	2 cut(s)	297, 303
SatI	GCNGC	3 cut(s)	154, 254, 257
Sau3AI	GATC	7 cut(s)	58, 66, 157, 188, 235, 268, 325
SetI	ASST	7 cut(s)	128, 210, 252, 325, 423, 500, 515
SfaNI	GCATC	3 cut(s)	497, 582, 639
SfcI	CTRYAG	2 cut(s)	96, 251
SmiMI	CAYNNNNRTG	1 cut(s)	572
SmlI	CTYRAG	1 cut(s)	129
SmoI	CTYRAG	1 cut(s)	129
Sse9I	AATT	3 cut(s)	349, 485, 606
SsiI	CCGC	2 cut(s)	154, 470
SspI	AATATT	3 cut(s)	91, 263, 301
StyI	CCWWGG	2 cut(s)	517, 555
TaiI	ACGT	2 cut(s)	210, 515
TaqI	TCGA	1 cut(s)	505
TasI	AATT	3 cut(s)	349, 485, 606
TauI	GCSGC	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	643
Tru1I	TTAA	2 cut(s)	297, 303
Tru9I	TTAA	2 cut(s)	297, 303
TseFI	GTSAC	1 cut(s)	574
TseI	GCWGC	2 cut(s)	253, 256
Tsp45I	GTSAC	1 cut(s)	574
TspDTI	ATGAA	1 cut(s)	576
VspI	ATTAAT	2 cut(s)	297, 303
XagI	CCTNNNNNAGG	1 cut(s)	554
XapI	RAATTY	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.