AT3G02160

Transcription initiation factor TFIID subunit 8-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009894
Physical Location & Seq
Forward (+)
394044 .. 396343
2300 bp
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UTR
Exon/CDS
Intron
AT3G02160.2

Sequence Viewer

Length: 1194 bp
ATGGTTCTACATGTTATGTTGGGTGAAGTTGTAACAAAGTTTTTGAATATGAACAATGGAGTTGGGGAAGGTGGAAGTCAGCAAAGAGAATTACATGGTAAGAGAAAGCTTTTCCGAGGCAATGATTTCGCTTTTTCCATAGCGAGAATGGCAGTGGCTCAGATATGCGAGAGTGTTGAGGTTAACCCGTATCAGGAATCACAGACACGTGAGGGTGTGAGGTTTAGTTCTTTTCAAGAATCTGCTCTTGATACACTAACTGATGTTGCGGTTCAGTATATTCAGAGCATTGGGAAGACTGCTCATTTGTATGCTAACTTAGCCGGTAGAGTAGATGGTAATTCTCTGGACATTCTTCAAGCATTAGAGGATTTGGGATCTGGTTTGGGTTTTGCTGGTGTTTCTGATACTGACCATTGTCTTGCTGATTCCGGTGTAGTCAAGGATATCATTCGTTATACTGGAGAAGCAGAGGAGATACCGTTTGTTTACTCTCTTCCTCGTTTCCCATTTAGTAAAGAGAAAAAACCTGCTCCTAGTTTCTCTGAGGTTGGAGCAGAACCTCCAGATGAACACATTCCTGTTTGGCTTCCTGCATTTCCCGAAACCGAATTGTGTGATCGATCAGAGGAAACTAATGCAGCCACAATCGAAGGAGAAATTCCTAGTAAAGAAAATGGTTCATCTTTACCGAGTATGCAACTTTCTTTCGATGGTGGTGGTAGGTTAGAAATACATAAATCTTCAAAGGATGTTGGAGAATCAACAGAAGCAGTAGTCGAAGGTAACCTGTTTCTAACTGCGCCTCTTCGATTTGTGGAGAAAAATGTGTCACCTGTGGTCCGCCCTTTGGAGCTTTCAAATGAAGTTGTTAGGACCAACCACGTTCCTGATAAGCATGTGAGGAACAACCATCACATCCCAATTCTTGAGGCATCTGCTCCATCGGATAAAATCAACAACAAGAACTGGTTAGCTATATCAAAGGATGTAGAGAAGGTAGATGTTGCAAGAAAAGAACTAACTTTGGTACGTTTCAAGATAGGGACTACAAAAAGATCTATGTGTTTGGCAAAAAATCGGAGCTTCCAGGAAGAGGGTTGGTTTCAAGAAGGTGAAGACAAGAGGGAGAAGACGTCAGAAATCAAAGAAAAGCGTGAAAGAATTGACTCGCAATTGTCAACTCAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromo_TP TAF8_C

Protein Analysis

397

Amino Acids

44.07

Weight (kDa)

5.33

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromo_TP PF07524 44 - 126 9.3e-14 Bromodomain associated
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009894)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02160 AT3G02160 AT5G15570
fragaria_vesca FvH4_6g46720 FvH4_6g46720
malus_domestica MD09G1068300.v1.1 MD17G1061200.v1.1
prunus_persica Prupe.3G252500_v2.0.a1
pyrus_communis pycom12433g00130 pycom17g06110
rosa_chinensis RchiOBHm_Chr2g0165611
rosa_laevigata RLG00000021543
rosa_multiflora Rmu_co8454451.1_g000001
rosa_roxburghii Rroxscaffold_2G00085690
rosa_rugosa Rorug02G0516400
rosa_samantha Rh2AG582700 Rh2BG594800 Rh2CG564600 Rh2DG604600
rosa_wichuraiana Rw0G016050 Rw2G048600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1139
Acc36I ACCTGC 1 cut(s) 538
AciI CCGC 2 cut(s) 269, 844
AclWI GGATC 1 cut(s) 385
AcsI RAATTY 1 cut(s) 660
AcvI CACGTG 1 cut(s) 209
AcyI GRCGYC 1 cut(s) 1136
AfaI GTAC 1 cut(s) 1032
AfiI CCNNNNNNNGG 3 cut(s) 193, 850, 1096
AflIII ACRYGT 2 cut(s) 10, 206
AgsI TTSAA 7 cut(s) 46, 236, 359, 747, 861, 1039, 1109
AjnI CCWGG 1 cut(s) 1089
AluBI AGCT 4 cut(s) 109, 856, 977, 1086
AluI AGCT 4 cut(s) 109, 856, 977, 1086
AlwI GGATC 1 cut(s) 385
ApeKI GCWGC 1 cut(s) 641
ApoI RAATTY 1 cut(s) 660
ArsI GACNNNNNNTTYG 2 cut(s) 289, 321
Asp700I GAANNNNTTC 1 cut(s) 576
AspLEI GCGC 1 cut(s) 805
AspS9I GGNCC 2 cut(s) 841, 876
AsuHPI GGTGA 3 cut(s) 35, 825, 1127
AvaII GGWCC 2 cut(s) 841, 876
BbrPI CACGTG 1 cut(s) 209
BbsI GAAGAC 3 cut(s) 302, 1125, 1139
BbvI GCAGC 1 cut(s) 653
BccI CCATC 4 cut(s) 329, 707, 921, 952
BcgI CGANNNNNNTGC 2 cut(s) 109, 143
BciT130I CCWGG 1 cut(s) 1091
BfaI CTAG 2 cut(s) 537, 666
BfuAI ACCTGC 1 cut(s) 538
BglII AGATCT 1 cut(s) 1058
BisI GCNGC 1 cut(s) 642
BlsI GCNGC 1 cut(s) 643
Bme1390I CCNGG 1 cut(s) 1091
Bme18I GGWCC 2 cut(s) 841, 876
BmgT120I GGNCC 2 cut(s) 841, 876
BmrFI CCNGG 1 cut(s) 1091
BmsI GCATC 1 cut(s) 944
BoxI GACNNNNGTC 1 cut(s) 417
BpiI GAAGAC 3 cut(s) 302, 1125, 1139
BpmI CTGGAG 2 cut(s) 483, 549
BpuEI CTTGAG 1 cut(s) 950
Bsa29I ATCGAT 1 cut(s) 622
BsaAI YACGTR 1 cut(s) 209
BsaHI GRCGYC 1 cut(s) 1136
BsaJI CCNNGG 1 cut(s) 115
BsaWI WCCGGW 1 cut(s) 431
BsaXI ACNNNNNCTCC 4 cut(s) 467, 497, 1121, 1151
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 850, 1096
Bse118I RCCGGY 1 cut(s) 323
Bse1I ACTGG 2 cut(s) 466, 974
Bse3DI GCAATG 1 cut(s) 127
BseBI CCWGG 1 cut(s) 1091
BseCI ATCGAT 1 cut(s) 622
BseDI CCNNGG 1 cut(s) 115
BseGI GGATG 3 cut(s) 757, 918, 994
BseLI CCNNNNNNNGG 3 cut(s) 193, 850, 1096
BseMI GCAATG 1 cut(s) 127
BseMII CTCAG 2 cut(s) 173, 537
BseNI ACTGG 2 cut(s) 466, 974
BseRI GAGGAG 1 cut(s) 488
BseXI GCAGC 1 cut(s) 653
BshVI ATCGAT 1 cut(s) 622
BsiSI CCGG 2 cut(s) 324, 432
BslFI GGGAC 1 cut(s) 1060
BslI CCNNNNNNNGG 3 cut(s) 193, 850, 1096
BsmFI GGGAC 1 cut(s) 1060
Bsp143I GATC 4 cut(s) 377, 619, 623, 1058
BspACI CCGC 2 cut(s) 269, 844
BspCNI CTCAG 2 cut(s) 172, 538
BspDI ATCGAT 1 cut(s) 622
BspMI ACCTGC 1 cut(s) 538
BspPI GGATC 1 cut(s) 385
BsrDI GCAATG 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 323
BsrI ACTGG 2 cut(s) 466, 974
BssAI RCCGGY 1 cut(s) 323
BssECI CCNNGG 1 cut(s) 115
BssMI GATC 4 cut(s) 377, 619, 623, 1058
BssNI GRCGYC 1 cut(s) 1136
Bst2UI CCWGG 1 cut(s) 1091
Bst4CI ACNGT 1 cut(s) 483
Bst6I CTCTTC 3 cut(s) 501, 813, 1089
BstACI GRCGYC 1 cut(s) 1136
BstBAI YACGTR 1 cut(s) 209
BstDEI CTNAG 4 cut(s) 159, 319, 546, 1185
BstEII GGTNACC 1 cut(s) 785
BstF5I GGATG 3 cut(s) 757, 918, 994
BstHHI GCGC 1 cut(s) 805
BstKTI GATC 4 cut(s) 380, 622, 626, 1061
BstMBI GATC 4 cut(s) 377, 619, 623, 1058
BstMWI GCNNNNNNNGC 2 cut(s) 149, 320
BstNI CCWGG 1 cut(s) 1091
BstNSI RCATGY 2 cut(s) 14, 902
BstPAI GACNNNNGTC 1 cut(s) 417
BstPI GGTNACC 1 cut(s) 785
BstSCI CCNGG 1 cut(s) 1089
BstV1I GCAGC 1 cut(s) 653
BstV2I GAAGAC 3 cut(s) 302, 1125, 1139
BstX2I RGATCY 2 cut(s) 377, 1058
BstYI RGATCY 2 cut(s) 377, 1058
Bsu15I ATCGAT 1 cut(s) 622
BsuTUI ATCGAT 1 cut(s) 622
BtsCI GGATG 3 cut(s) 757, 918, 994
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 159
BveI ACCTGC 1 cut(s) 538
CfoI GCGC 1 cut(s) 805
Cfr10I RCCGGY 1 cut(s) 323
Cfr13I GGNCC 2 cut(s) 841, 876
ClaI ATCGAT 1 cut(s) 622
Csp6I GTAC 1 cut(s) 1031
CviAII CATG 3 cut(s) 11, 95, 899
CviJI RGCY 8 cut(s) 109, 158, 323, 589, 644, 856, 977, 1086
CviKI_1 RGCY 8 cut(s) 109, 158, 323, 589, 644, 856, 977, 1086
CviQI GTAC 1 cut(s) 1031
DdeI CTNAG 4 cut(s) 159, 319, 546, 1185
DpnI GATC 4 cut(s) 379, 621, 625, 1060
DpnII GATC 4 cut(s) 377, 619, 623, 1058
Eam1104I CTCTTC 3 cut(s) 501, 813, 1089
EarI CTCTTC 3 cut(s) 501, 813, 1089
EciI GGCGGA 1 cut(s) 833
Eco32I GATATC 1 cut(s) 448
Eco47I GGWCC 2 cut(s) 841, 876
Eco72I CACGTG 1 cut(s) 209
Eco91I GGTNACC 1 cut(s) 785
EcoO65I GGTNACC 1 cut(s) 785
EcoRII CCWGG 1 cut(s) 1089
EcoRV GATATC 1 cut(s) 448
FaeI CATG 3 cut(s) 14, 98, 902
FaqI GGGAC 1 cut(s) 1060
FatI CATG 3 cut(s) 10, 94, 898
Fnu4HI GCNGC 1 cut(s) 642
FokI GGATG 3 cut(s) 764, 905, 1001
Fsp4HI GCNGC 1 cut(s) 642
FspBI CTAG 2 cut(s) 537, 666
GlaI GCGC 1 cut(s) 804
GluI GCNGC 1 cut(s) 642
GsuI CTGGAG 2 cut(s) 483, 549
HapII CCGG 2 cut(s) 324, 432
HhaI GCGC 1 cut(s) 805
Hin1I GRCGYC 1 cut(s) 1136
Hin1II CATG 3 cut(s) 14, 98, 902
Hin6I GCGC 1 cut(s) 803
HinP1I GCGC 1 cut(s) 803
HincII GTYRAC 2 cut(s) 184, 1182
HindII GTYRAC 2 cut(s) 184, 1182
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 5 cut(s) 197, 239, 428, 761, 1169
HpaI GTTAAC 1 cut(s) 184
HpaII CCGG 2 cut(s) 324, 432
HphI GGTGA 3 cut(s) 35, 825, 1127
Hpy166II GTNNAC 3 cut(s) 184, 490, 1182
Hpy8I GTNNAC 3 cut(s) 184, 490, 1182
HpyAV CCTTC 5 cut(s) 62, 647, 776, 991, 1106
HpyCH4III ACNGT 1 cut(s) 483
HpyCH4IV ACGT 4 cut(s) 208, 885, 1033, 1136
HpyCH4V TGCA 4 cut(s) 596, 641, 700, 1010
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 320
HpyF3I CTNAG 4 cut(s) 159, 319, 546, 1185
HpySE526I ACGT 4 cut(s) 208, 885, 1033, 1136
Hsp92I GRCGYC 1 cut(s) 1136
Hsp92II CATG 3 cut(s) 14, 98, 902
HspAI GCGC 1 cut(s) 803
KspAI GTTAAC 1 cut(s) 184
Kzo9I GATC 4 cut(s) 377, 619, 623, 1058
LmnI GCTCC 5 cut(s) 538, 554, 853, 946, 1083
Lsp1109I GCAGC 1 cut(s) 653
LweI GCATC 1 cut(s) 944
MaeI CTAG 2 cut(s) 537, 666
MaeII ACGT 4 cut(s) 208, 885, 1033, 1136
MaeIII GTNAC 3 cut(s) 31, 785, 831
MalI GATC 4 cut(s) 379, 621, 625, 1060
MboI GATC 4 cut(s) 377, 619, 623, 1058
MboII GAAGA 8 cut(s) 307, 347, 488, 735, 800, 1106, 1130, 1144
MfeI CAATTG 1 cut(s) 1175
MflI RGATCY 2 cut(s) 377, 1058
MluCI AATT 7 cut(s) 89, 340, 611, 660, 924, 1164, 1175
MlyI GAGTC 1 cut(s) 1163
MmeI TCCRAC 2 cut(s) 532, 736
MroXI GAANNNNTTC 1 cut(s) 576
MseI TTAA 1 cut(s) 183
MslI CAYNNNNRTG 1 cut(s) 309
MspI CCGG 2 cut(s) 324, 432
MspR9I CCNGG 1 cut(s) 1091
MunI CAATTG 1 cut(s) 1175
MvaI CCWGG 1 cut(s) 1091
MwoI GCNNNNNNNGC 2 cut(s) 149, 320
NdeII GATC 4 cut(s) 377, 619, 623, 1058
NlaIII CATG 3 cut(s) 14, 98, 902
NmuCI GTSAC 1 cut(s) 831
NspI RCATGY 2 cut(s) 14, 902
PciI ACATGT 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 576
PfeI GAWTC 4 cut(s) 197, 239, 428, 761
PfoI TCCNGGA 1 cut(s) 1089
PkrI GCNGC 1 cut(s) 643
PleI GAGTC 1 cut(s) 1163
PmaCI CACGTG 1 cut(s) 209
PmlI CACGTG 1 cut(s) 209
PpsI GAGTC 1 cut(s) 1163
Ppu21I YACGTR 1 cut(s) 209
PscI ACATGT 1 cut(s) 10
PshAI GACNNNNGTC 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 1089
PspCI CACGTG 1 cut(s) 209
PspEI GGTNACC 1 cut(s) 785
PspGI CCWGG 1 cut(s) 1089
PspPI GGNCC 2 cut(s) 841, 876
PsuI RGATCY 2 cut(s) 377, 1058
RsaI GTAC 1 cut(s) 1032
RsaNI GTAC 1 cut(s) 1031
RseI CAYNNNNRTG 1 cut(s) 309
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 1 cut(s) 642
Sau3AI GATC 4 cut(s) 377, 619, 623, 1058
Sau96I GGNCC 2 cut(s) 841, 876
SchI GAGTC 1 cut(s) 1163
ScrFI CCNGG 1 cut(s) 1091
SfaNI GCATC 1 cut(s) 944
SinI GGWCC 2 cut(s) 841, 876
SmiMI CAYNNNNRTG 1 cut(s) 309
SmlI CTYRAG 1 cut(s) 929
SmoI CTYRAG 1 cut(s) 929
Sse9I AATT 7 cut(s) 89, 340, 611, 660, 924, 1164, 1175
SsiI CCGC 2 cut(s) 269, 844
SspMI CTAG 2 cut(s) 537, 666
StyD4I CCNGG 1 cut(s) 1089
TaaI ACNGT 1 cut(s) 483
TaiI ACGT 4 cut(s) 211, 888, 1036, 1139
TaqI TCGA 5 cut(s) 622, 651, 711, 780, 811
TasI AATT 7 cut(s) 89, 340, 611, 660, 924, 1164, 1175
TfiI GAWTC 4 cut(s) 197, 239, 428, 761
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 1 cut(s) 831
TseI GCWGC 1 cut(s) 641
Tsp45I GTSAC 1 cut(s) 831
TspDTI ATGAA 4 cut(s) 65, 585, 672, 879
TspRI CASTG 1 cut(s) 159
VpaK11BI GGWCC 2 cut(s) 841, 876
XapI RAATTY 1 cut(s) 660
XceI RCATGY 2 cut(s) 14, 902
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 576
XspI CTAG 2 cut(s) 537, 666
ZraI GACGTC 1 cut(s) 1137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.