pycom12433g00130

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012433
OG0009894
Physical Location & Seq
Reverse (-)
104259 .. 105142
884 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12433g00130.2

Sequence Viewer

Length: 813 bp
ATGTTTTTGATATCATTCAAGGGGACAGTTAGGGAAATTGCTCAGTATGTTGCTGAAACTGAGCATATTCCATTTTCCTACTCTATTCTTCAATTCCCAGTTGTTAAGGACCGAAATCTGAATCCTAGTTTTTGGCAAAGCGGCGTAGAGACACCTGGTGAGCATATACCTAGTTGGTTGCCTGCTTTTCCTGAACCACATACATATGCCCAGTCACCCATATTGAATGAGAGAGCTATAGAACCTCAAACTGATATGGTTGAGCAAGAAAAACAACAGAGAAATGTGGAGCGGTCTCTATTCAATTTGCAGCGGAGGCTGTTATGCAACGGGTCGGAGGGACCCTCTGTTGAGTCTGAAGATGCTGATAAGGCAAAACAAGCAAGAGAAAGTAACCCTTTTCTTGCTATTCCTCTGCAATATGGGGAGACGGATGTATCTCATGTTGCTTTTCCATCTAAAATTTCAAGTGAAGCCACAGCGGGAAATGTTGTTGCTGAGAACCATGTCCTGAATCAGTGTTCACTGCTGGAGACCCTTGCTCCAGCTATTGAAACAATGAAGAGTGGATCATGTGAATCAGAGGAGGGGCAGAAAGAGATTCTTGTGAGCAGAAGACCAATTGTGCAATTTAAGGTTGGAATTGCAAAGAAGTCCTTAAGTACTACGTTTCATTCGAGCCCATACAACAAGGGTTTTCGGAAAACCTATTCCTTGTTTGAAAGAGAATTTGAGAAGGATGAAAAGAAAAGGAGGGCTGAGAAAATTCTGAAGGATTCCATGGAAAACCCAGAGGAGCTTGCTGAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromo_TP TAF8_C

Protein Analysis

271

Amino Acids

30.58

Weight (kDa)

5.44

Isoelectric Point (pI)

64.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009894)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02160 AT3G02160 AT5G15570
fragaria_vesca FvH4_6g46720 FvH4_6g46720
malus_domestica MD09G1068300.v1.1 MD17G1061200.v1.1
prunus_persica Prupe.3G252500_v2.0.a1
pyrus_communis pycom12433g00130 pycom17g06110
rosa_chinensis RchiOBHm_Chr2g0165611
rosa_laevigata RLG00000021543
rosa_multiflora Rmu_co8454451.1_g000001
rosa_roxburghii Rroxscaffold_2G00085690
rosa_rugosa Rorug02G0516400
rosa_samantha Rh2AG582700 Rh2BG594800 Rh2CG564600 Rh2DG604600
rosa_wichuraiana Rw0G016050 Rw2G048600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 292
AciI CCGC 4 cut(s) 141, 292, 313, 482
AclWI GGATC 1 cut(s) 577
AcsI RAATTY 3 cut(s) 462, 728, 765
AcuI CTGAAG 2 cut(s) 378, 791
AdeI CACNNNGTG 1 cut(s) 158
AfaI GTAC 1 cut(s) 664
AflII CTTAAG 1 cut(s) 658
AgsI TTSAA 7 cut(s) 19, 92, 226, 304, 468, 554, 722
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 3 cut(s) 236, 548, 799
AluI AGCT 3 cut(s) 236, 548, 799
Alw26I GTCTC 4 cut(s) 143, 300, 422, 527
AlwI GGATC 1 cut(s) 577
ApeKI GCWGC 1 cut(s) 310
ApoI RAATTY 3 cut(s) 462, 728, 765
AspS9I GGNCC 2 cut(s) 109, 341
AsuHPI GGTGA 2 cut(s) 170, 207
AvaII GGWCC 2 cut(s) 109, 341
BaeI ACNNNNGTAYC 2 cut(s) 420, 453
BanII GRGCYC 1 cut(s) 683
BbsI GAAGAC 1 cut(s) 622
BbvI GCAGC 1 cut(s) 322
BccI CCATC 1 cut(s) 463
BciT130I CCWGG 1 cut(s) 156
BcoDI GTCTC 4 cut(s) 143, 300, 422, 527
BfaI CTAG 2 cut(s) 126, 171
BfmI CTRYAG 1 cut(s) 237
BfrI CTTAAG 1 cut(s) 658
BisI GCNGC 2 cut(s) 142, 311
BlsI GCNGC 2 cut(s) 143, 312
BmcAI AGTACT 1 cut(s) 664
Bme1390I CCNGG 1 cut(s) 156
Bme18I GGWCC 2 cut(s) 109, 341
BmgT120I GGNCC 2 cut(s) 109, 341
BmiI GGNNCC 2 cut(s) 342, 343
BmrFI CCNGG 1 cut(s) 156
BmrI ACTGGG 2 cut(s) 92, 205
BmsI GCATC 1 cut(s) 352
BmuI ACTGGG 2 cut(s) 92, 205
BpiI GAAGAC 1 cut(s) 622
BplI GAGNNNNNCTC 2 cut(s) 329, 361
BpmI CTGGAG 2 cut(s) 528, 551
BsaI GGTCTC 2 cut(s) 300, 527
BsaJI CCNNGG 1 cut(s) 780
BsaXI ACNNNNNCTCC 2 cut(s) 526, 556
Bse1I ACTGG 2 cut(s) 98, 211
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 780
BseGI GGATG 2 cut(s) 439, 745
BseMII CTCAG 5 cut(s) 51, 56, 489, 750, 795
BseNI ACTGG 2 cut(s) 98, 211
BseRI GAGGAG 2 cut(s) 599, 809
BseXI GCAGC 1 cut(s) 322
BslFI GGGAC 2 cut(s) 37, 354
BsmAI GTCTC 4 cut(s) 143, 300, 422, 527
BsmBI CGTCTC 1 cut(s) 422
BsmFI GGGAC 2 cut(s) 37, 354
Bso31I GGTCTC 2 cut(s) 300, 527
Bsp1286I GDGCHC 1 cut(s) 683
Bsp143I GATC 1 cut(s) 569
Bsp19I CCATGG 1 cut(s) 780
BspACI CCGC 4 cut(s) 141, 292, 313, 482
BspCNI CTCAG 5 cut(s) 52, 55, 490, 751, 796
BspLI GGNNCC 2 cut(s) 342, 343
BspPI GGATC 1 cut(s) 577
BspTI CTTAAG 1 cut(s) 658
BspTNI GGTCTC 2 cut(s) 300, 527
BsrBI CCGCTC 1 cut(s) 292
BsrI ACTGG 2 cut(s) 98, 211
BssECI CCNNGG 1 cut(s) 780
BssMI GATC 1 cut(s) 569
BssT1I CCWWGG 1 cut(s) 780
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 557
BstAFI CTTAAG 1 cut(s) 658
BstC8I GCNNGC 2 cut(s) 183, 801
BstDEI CTNAG 5 cut(s) 42, 60, 498, 759, 804
BstDSI CCRYGG 1 cut(s) 780
BstF5I GGATG 2 cut(s) 439, 745
BstKTI GATC 1 cut(s) 572
BstMAI GTCTC 4 cut(s) 143, 300, 422, 527
BstMBI GATC 1 cut(s) 569
BstMWI GCNNNNNNNGC 3 cut(s) 316, 371, 380
BstNI CCWGG 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 154
BstSFI CTRYAG 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 322
BstV2I GAAGAC 1 cut(s) 622
BtgI CCRYGG 1 cut(s) 780
BtsCI GGATG 2 cut(s) 439, 745
BtsI GCAGTG 1 cut(s) 524
BtsIMutI CAGTG 2 cut(s) 524, 524
Cac8I GCNNGC 2 cut(s) 183, 801
Cfr13I GGNCC 2 cut(s) 109, 341
CsiI ACCWGGT 1 cut(s) 154
Csp6I GTAC 1 cut(s) 663
CviAII CATG 4 cut(s) 443, 506, 573, 781
CviJI RGCY 7 cut(s) 236, 319, 476, 548, 681, 758, 799
CviKI_1 RGCY 7 cut(s) 236, 319, 476, 548, 681, 758, 799
CviQI GTAC 1 cut(s) 663
DdeI CTNAG 5 cut(s) 42, 60, 498, 759, 804
DpnI GATC 1 cut(s) 571
DpnII GATC 1 cut(s) 569
DraIII CACNNNGTG 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 557
EarI CTCTTC 1 cut(s) 557
Eco130I CCWWGG 1 cut(s) 780
Eco24I GRGCYC 1 cut(s) 683
Eco31I GGTCTC 2 cut(s) 300, 527
Eco32I GATATC 1 cut(s) 12
Eco47I GGWCC 2 cut(s) 109, 341
Eco57I CTGAAG 2 cut(s) 378, 791
EcoO109I RGGNCCY 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 154
EcoRV GATATC 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 780
EcoT38I GRGCYC 1 cut(s) 683
ErhI CCWWGG 1 cut(s) 780
Esp3I CGTCTC 1 cut(s) 422
FaeI CATG 4 cut(s) 446, 509, 576, 784
FalI AAGNNNNNCTT 6 cut(s) 382, 414, 588, 620, 641, 673
FaqI GGGAC 2 cut(s) 37, 354
FatI CATG 4 cut(s) 442, 505, 572, 780
FauI CCCGC 1 cut(s) 475
FauNDI CATATG 1 cut(s) 205
Fnu4HI GCNGC 2 cut(s) 142, 311
FokI GGATG 2 cut(s) 446, 752
FriOI GRGCYC 1 cut(s) 683
Fsp4HI GCNGC 2 cut(s) 142, 311
FspBI CTAG 2 cut(s) 126, 171
GluI GCNGC 2 cut(s) 142, 311
GsuI CTGGAG 2 cut(s) 528, 551
Hin1II CATG 4 cut(s) 446, 509, 576, 784
HinfI GANTC 6 cut(s) 121, 353, 514, 578, 601, 776
HphI GGTGA 2 cut(s) 170, 207
Hpy166II GTNNAC 1 cut(s) 524
Hpy188I TCNGA 6 cut(s) 120, 337, 358, 583, 702, 771
Hpy188III TCNNGA 2 cut(s) 191, 511
Hpy8I GTNNAC 1 cut(s) 524
HpyAV CCTTC 2 cut(s) 730, 766
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 668
HpyCH4V TGCA 5 cut(s) 310, 327, 418, 628, 647
HpyF10VI GCNNNNNNNGC 3 cut(s) 316, 371, 380
HpyF3I CTNAG 5 cut(s) 42, 60, 498, 759, 804
HpySE526I ACGT 1 cut(s) 668
Hsp92II CATG 4 cut(s) 446, 509, 576, 784
KflI GGGWCCC 1 cut(s) 341
Kzo9I GATC 1 cut(s) 569
LmnI GCTCC 3 cut(s) 289, 547, 796
Lsp1109I GCAGC 1 cut(s) 322
LweI GCATC 1 cut(s) 352
MabI ACCWGGT 1 cut(s) 154
MaeI CTAG 2 cut(s) 126, 171
MaeII ACGT 1 cut(s) 668
MaeIII GTNAC 2 cut(s) 213, 392
MalI GATC 1 cut(s) 571
MbiI CCGCTC 1 cut(s) 292
MboI GATC 1 cut(s) 569
MboII GAAGA 4 cut(s) 80, 371, 574, 627
MfeI CAATTG 1 cut(s) 621
MhlI GDGCHC 1 cut(s) 683
MluCI AATT 9 cut(s) 36, 92, 304, 462, 621, 629, 642, 728, 765
MlyI GAGTC 1 cut(s) 362
MmeI TCCRAC 2 cut(s) 315, 619
MnlI CCTC 9 cut(s) 255, 309, 331, 355, 423, 577, 580, 747, 787
MseI TTAA 3 cut(s) 105, 633, 659
MslI CAYNNNNRTG 1 cut(s) 204
MspA1I CMGCKG 2 cut(s) 313, 482
MspCI CTTAAG 1 cut(s) 658
MspR9I CCNGG 1 cut(s) 156
MunI CAATTG 1 cut(s) 621
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 3 cut(s) 316, 371, 380
NcoI CCATGG 1 cut(s) 780
NdeI CATATG 1 cut(s) 205
NdeII GATC 1 cut(s) 569
NlaIII CATG 4 cut(s) 446, 509, 576, 784
NlaIV GGNNCC 2 cut(s) 342, 343
NmuCI GTSAC 1 cut(s) 213
PcsI WCGNNNNNNNCGW 1 cut(s) 674
PfeI GAWTC 5 cut(s) 121, 514, 578, 601, 776
PkrI GCNGC 2 cut(s) 143, 312
PleI GAGTC 1 cut(s) 361
PpsI GAGTC 1 cut(s) 361
PpuMI RGGWCCY 1 cut(s) 341
Psp5II RGGWCCY 1 cut(s) 341
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 2 cut(s) 342, 343
PspPI GGNCC 2 cut(s) 109, 341
PspPPI RGGWCCY 1 cut(s) 341
RsaI GTAC 1 cut(s) 664
RsaNI GTAC 1 cut(s) 663
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 3 cut(s) 105, 633, 659
SatI GCNGC 2 cut(s) 142, 311
Sau3AI GATC 1 cut(s) 569
Sau96I GGNCC 2 cut(s) 109, 341
ScaI AGTACT 1 cut(s) 664
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 1 cut(s) 156
SduI GDGCHC 1 cut(s) 683
SetI ASST 9 cut(s) 157, 172, 238, 247, 550, 639, 671, 710, 801
SexAI ACCWGGT 1 cut(s) 154
SfaNI GCATC 1 cut(s) 352
SfcI CTRYAG 1 cut(s) 237
SinI GGWCC 2 cut(s) 109, 341
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 658
SmoI CTYRAG 1 cut(s) 658
Sse9I AATT 9 cut(s) 36, 92, 304, 462, 621, 629, 642, 728, 765
SsiI CCGC 4 cut(s) 141, 292, 313, 482
SspMI CTAG 2 cut(s) 126, 171
StyD4I CCNGG 1 cut(s) 154
StyI CCWWGG 1 cut(s) 780
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 1 cut(s) 671
TaqI TCGA 1 cut(s) 677
TaqII GACCGA 1 cut(s) 126
TasI AATT 9 cut(s) 36, 92, 304, 462, 621, 629, 642, 728, 765
TatI WGTACW 1 cut(s) 662
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 5 cut(s) 121, 514, 578, 601, 776
Tru1I TTAA 3 cut(s) 105, 633, 659
Tru9I TTAA 3 cut(s) 105, 633, 659
TscAI CASTG 2 cut(s) 524, 531
TseFI GTSAC 1 cut(s) 213
TseI GCWGC 1 cut(s) 310
Tsp45I GTSAC 1 cut(s) 213
TspDTI ATGAA 3 cut(s) 575, 662, 756
TspGWI ACGGA 1 cut(s) 446
TspRI CASTG 2 cut(s) 524, 531
Vha464I CTTAAG 1 cut(s) 658
VpaK11BI GGWCC 2 cut(s) 109, 341
XapI RAATTY 3 cut(s) 462, 728, 765
XspI CTAG 2 cut(s) 126, 171
ZrmI AGTACT 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.