pycom17g06110

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0009894
Physical Location & Seq
Forward (+)
4306790 .. 4307923
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g06110.1

Sequence Viewer

Length: 1134 bp
ATGACCAATGGGGGTGGGGAGAGTGGAAGAGAGCATGAACAACACAATAGAATGCAGAGAATATCGAGCGATGATGAATTTGCAAAATCAATTGCGAAGATTGCTGTAGTGCAAGTATGTGAGATAGTGGGGTTTCAGACATTCCAGTTGTCTGCTCTCGAAACACTTTCTGATGTTGCTGTTCAGTACATTCATAACATCGGGAAGACTGCGCATTTATATGCTAATTTAGCTGGAAGAGTGGAATGTAATGTTTTTGATATCATTCAAGGGTTGGAAGATTTGGGCGTGGTGCAGGGATTTATAGGTGCTTCAGACGTTGATCATTGTCTTGCAAGTTCGGGGACGGTTAGGGAAATTGCTCAGTATGTTACTGAAACTGAACATATTCCATTTGCCTACTCTATTCCTCAATTCCCAGTTGTTAAGGACCGAAAGCTGACTCCTAGTTTTTGGCAAAGAGGGGTAGAGACGCCTGGAGAGCATATACCTAGTTGGTTGCCTGCTTTTCCTGAATCACATACATATGCCCAGTCACCAATATCCAATGAGAGAGCTATAGAACCTCACACTGATATGATTGAGCAAGAAAAACAACAGAGAAATGTGGAGCGGTCTCTGTATAATTTGCAGCGGAGGCTTTTATGCAATGGGATGGAGGGACCTTCTGTTGGCCCTGAAGATGCTGATAAGGCAAAACAAGCAAGAGAAAGTAACCCTTTTCTTGCTACACCTCTGCAATATGGGGAGACAGAAGTATCTCATGTTGCTCTTCCAGCTAAACTTTCAAGTGAAGCCACAGCACGAAATGTTGTTGCTGAGAACCATGTCCTGAATCAGTCTTCACTGCTGGAGACCTTTGCTCCAGCTATTGAAGCAGTGAAGAGTGGATCGTGTGAATCAGAGGAGGGGCGGAAAGAGATTCTTTTGAGCAGGAGACCAATTGTGCAATTTAAGGTTGGAACCGCGAAGAAGTCCTTTGGTACTATGTTTCATTCAAGCCCACACAACAAGGGTTTTCAGAAAACTGATTCCTGGTTTGAAAGAGAAAATGAGAAGGATGTAAAGAAAAGGAGGGCTGAGAAGATTCTGAAGGATTCCATGGAAAACCAAGAGGAGCTTGCTGAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromo_TP TAF8_C

Protein Analysis

378

Amino Acids

42.08

Weight (kDa)

5.54

Isoelectric Point (pI)

55.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromo_TP PF07524 25 - 97 3e-22 Bromodomain associated
TAF8_C PF10406 162 - 210 3.2e-15 Transcription factor TFIID complex subunit 8 C-term
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009894)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02160 AT3G02160 AT5G15570
fragaria_vesca FvH4_6g46720 FvH4_6g46720
malus_domestica MD09G1068300.v1.1 MD17G1061200.v1.1
prunus_persica Prupe.3G252500_v2.0.a1
pyrus_communis pycom12433g00130 pycom17g06110
rosa_chinensis RchiOBHm_Chr2g0165611
rosa_laevigata RLG00000021543
rosa_multiflora Rmu_co8454451.1_g000001
rosa_roxburghii Rroxscaffold_2G00085690
rosa_rugosa Rorug02G0516400
rosa_samantha Rh2AG582700 Rh2BG594800 Rh2CG564600 Rh2DG604600
rosa_wichuraiana Rw0G016050 Rw2G048600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 213
AccBSI CCGCTC 1 cut(s) 613
AccII CGCG 1 cut(s) 968
AciI CCGC 4 cut(s) 613, 634, 913, 966
AclWI GGATC 1 cut(s) 898
AcsI RAATTY 1 cut(s) 77
AcuI CTGAAG 3 cut(s) 297, 699, 1112
AcyI GRCGYC 1 cut(s) 473
AfaI GTAC 2 cut(s) 188, 985
AfiI CCNNNNNNNGG 1 cut(s) 671
AgsI TTSAA 5 cut(s) 269, 789, 875, 999, 1043
AjnI CCWGG 2 cut(s) 475, 1034
AluBI AGCT 6 cut(s) 233, 439, 557, 779, 869, 1120
AluI AGCT 6 cut(s) 233, 439, 557, 779, 869, 1120
Alw26I GTCTC 5 cut(s) 464, 621, 743, 848, 931
AlwI GGATC 1 cut(s) 898
AoxI GGCC 1 cut(s) 673
ApeKI GCWGC 1 cut(s) 631
ApoI RAATTY 1 cut(s) 77
Asp700I GAANNNNTTC 1 cut(s) 387
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 3 cut(s) 430, 662, 674
AsuHPI GGTGA 1 cut(s) 528
AvaII GGWCC 2 cut(s) 430, 662
BaeI ACNNNNGTAYC 2 cut(s) 741, 774
BbsI GAAGAC 2 cut(s) 212, 834
BbvI GCAGC 1 cut(s) 643
BccI CCATC 1 cut(s) 649
BciT130I CCWGG 2 cut(s) 477, 1036
BclI TGATCA 1 cut(s) 322
BcoDI GTCTC 5 cut(s) 464, 621, 743, 848, 931
BfaI CTAG 2 cut(s) 447, 492
BfmI CTRYAG 2 cut(s) 105, 558
BisI GCNGC 1 cut(s) 632
BlsI GCNGC 1 cut(s) 633
Bme1390I CCNGG 2 cut(s) 477, 1036
Bme18I GGWCC 2 cut(s) 430, 662
BmgT120I GGNCC 3 cut(s) 430, 662, 674
BmiI GGNNCC 2 cut(s) 663, 964
BmrFI CCNGG 2 cut(s) 477, 1036
BmrI ACTGGG 2 cut(s) 413, 526
BmsI GCATC 1 cut(s) 673
BmuI ACTGGG 2 cut(s) 413, 526
BpiI GAAGAC 2 cut(s) 212, 834
BpmI CTGGAG 3 cut(s) 498, 849, 872
BsaHI GRCGYC 1 cut(s) 473
BsaI GGTCTC 3 cut(s) 621, 848, 931
BsaJI CCNNGG 1 cut(s) 1101
BsaXI ACNNNNNCTCC 2 cut(s) 847, 877
Bsc4I CCNNNNNNNGG 1 cut(s) 671
Bse1I ACTGG 3 cut(s) 145, 419, 532
Bse3DI GCAATG 1 cut(s) 655
BseBI CCWGG 2 cut(s) 477, 1036
BseDI CCNNGG 1 cut(s) 1101
BseGI GGATG 2 cut(s) 660, 1066
BseLI CCNNNNNNNGG 1 cut(s) 671
BseMI GCAATG 1 cut(s) 655
BseMII CTCAG 4 cut(s) 377, 810, 1071, 1116
BseNI ACTGG 3 cut(s) 145, 419, 532
BseRI GAGGAG 2 cut(s) 920, 1130
BseXI GCAGC 1 cut(s) 643
BsgI GTGCAG 1 cut(s) 314
Bsh1236I CGCG 1 cut(s) 968
BshFI GGCC 1 cut(s) 675
BslFI GGGAC 2 cut(s) 358, 675
BslI CCNNNNNNNGG 1 cut(s) 671
BsmAI GTCTC 5 cut(s) 464, 621, 743, 848, 931
BsmBI CGTCTC 1 cut(s) 464
BsmFI GGGAC 2 cut(s) 358, 675
BsmI GAATGC 1 cut(s) 57
BsnI GGCC 1 cut(s) 675
Bso31I GGTCTC 3 cut(s) 621, 848, 931
Bsp143I GATC 2 cut(s) 322, 890
Bsp19I CCATGG 1 cut(s) 1101
BspACI CCGC 4 cut(s) 613, 634, 913, 966
BspANI GGCC 1 cut(s) 675
BspCNI CTCAG 4 cut(s) 376, 811, 1072, 1117
BspFNI CGCG 1 cut(s) 968
BspLI GGNNCC 2 cut(s) 663, 964
BspPI GGATC 1 cut(s) 898
BspQI GCTCTTC 1 cut(s) 777
BspTNI GGTCTC 3 cut(s) 621, 848, 931
BsrBI CCGCTC 1 cut(s) 613
BsrDI GCAATG 1 cut(s) 655
BsrI ACTGG 3 cut(s) 145, 419, 532
BssECI CCNNGG 1 cut(s) 1101
BssMI GATC 2 cut(s) 322, 890
BssNI GRCGYC 1 cut(s) 473
BssT1I CCWWGG 1 cut(s) 1101
Bst2UI CCWGG 2 cut(s) 477, 1036
Bst4CI ACNGT 1 cut(s) 349
Bst6I CTCTTC 4 cut(s) 22, 232, 777, 878
BstACI GRCGYC 1 cut(s) 473
BstC8I GCNNGC 2 cut(s) 504, 1122
BstDEI CTNAG 4 cut(s) 363, 819, 1080, 1125
BstDSI CCRYGG 1 cut(s) 1101
BstF5I GGATG 2 cut(s) 660, 1066
BstFNI CGCG 1 cut(s) 968
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 2 cut(s) 325, 893
BstMAI GTCTC 5 cut(s) 464, 621, 743, 848, 931
BstMBI GATC 2 cut(s) 322, 890
BstMWI GCNNNNNNNGC 8 cut(s) 101, 230, 481, 637, 692, 701, 776, 875
BstNI CCWGG 2 cut(s) 477, 1036
BstSCI CCNGG 2 cut(s) 475, 1034
BstSFI CTRYAG 2 cut(s) 105, 558
BstUI CGCG 1 cut(s) 968
BstV1I GCAGC 1 cut(s) 643
BstV2I GAAGAC 2 cut(s) 212, 834
BsuRI GGCC 1 cut(s) 675
BtgI CCRYGG 1 cut(s) 1101
BtgZI GCGATG 1 cut(s) 84
BtsCI GGATG 2 cut(s) 660, 1066
BtsI GCAGTG 2 cut(s) 845, 885
BtsIMutI CAGTG 3 cut(s) 570, 845, 885
Cac8I GCNNGC 2 cut(s) 504, 1122
CfoI GCGC 1 cut(s) 214
Cfr13I GGNCC 3 cut(s) 430, 662, 674
CseI GACGC 1 cut(s) 481
Csp6I GTAC 2 cut(s) 187, 984
CspCI CAANNNNNGTGG 1 cut(s) 30
CviAII CATG 4 cut(s) 35, 764, 827, 1102
CviQI GTAC 2 cut(s) 187, 984
DdeI CTNAG 4 cut(s) 363, 819, 1080, 1125
DpnI GATC 2 cut(s) 324, 892
DpnII GATC 2 cut(s) 322, 890
Eam1104I CTCTTC 4 cut(s) 22, 232, 777, 878
EarI CTCTTC 4 cut(s) 22, 232, 777, 878
EciI GGCGGA 1 cut(s) 928
Eco130I CCWWGG 1 cut(s) 1101
Eco31I GGTCTC 3 cut(s) 621, 848, 931
Eco32I GATATC 1 cut(s) 262
Eco47I GGWCC 2 cut(s) 430, 662
Eco57I CTGAAG 3 cut(s) 297, 699, 1112
EcoO109I RGGNCCY 1 cut(s) 662
EcoRII CCWGG 2 cut(s) 475, 1034
EcoRV GATATC 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 1101
ErhI CCWWGG 1 cut(s) 1101
Esp3I CGTCTC 1 cut(s) 464
FaeI CATG 4 cut(s) 38, 767, 830, 1105
FalI AAGNNNNNCTT 7 cut(s) 703, 735, 909, 941, 962, 994, 1104
FaqI GGGAC 2 cut(s) 358, 675
FatI CATG 4 cut(s) 34, 763, 826, 1101
FauNDI CATATG 1 cut(s) 526
FbaI TGATCA 1 cut(s) 322
Fnu4HI GCNGC 1 cut(s) 632
FokI GGATG 2 cut(s) 667, 1073
Fsp4HI GCNGC 1 cut(s) 632
FspBI CTAG 2 cut(s) 447, 492
FspI TGCGCA 1 cut(s) 213
GlaI GCGC 1 cut(s) 213
GluI GCNGC 1 cut(s) 632
GsuI CTGGAG 3 cut(s) 498, 849, 872
HaeIII GGCC 1 cut(s) 675
HgaI GACGC 1 cut(s) 481
HhaI GCGC 1 cut(s) 214
Hin1I GRCGYC 1 cut(s) 473
Hin1II CATG 4 cut(s) 38, 767, 830, 1105
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HinfI GANTC 8 cut(s) 442, 515, 835, 899, 922, 1031, 1087, 1097
HphI GGTGA 1 cut(s) 528
Hpy188I TCNGA 6 cut(s) 138, 172, 316, 904, 1023, 1092
Hpy188III TCNNGA 4 cut(s) 158, 202, 512, 832
HpyAV CCTTC 3 cut(s) 675, 1051, 1087
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 9 cut(s) 55, 83, 112, 295, 335, 631, 648, 739, 949
HpyF10VI GCNNNNNNNGC 8 cut(s) 101, 230, 481, 637, 692, 701, 776, 875
HpyF3I CTNAG 4 cut(s) 363, 819, 1080, 1125
HpySE526I ACGT 1 cut(s) 318
Hsp92I GRCGYC 1 cut(s) 473
Hsp92II CATG 4 cut(s) 38, 767, 830, 1105
HspAI GCGC 1 cut(s) 212
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 2 cut(s) 322, 890
LguI GCTCTTC 1 cut(s) 777
LmnI GCTCC 3 cut(s) 610, 868, 1117
Lsp1109I GCAGC 1 cut(s) 643
LweI GCATC 1 cut(s) 673
MaeI CTAG 2 cut(s) 447, 492
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 3 cut(s) 370, 534, 713
MalI GATC 2 cut(s) 324, 892
MbiI CCGCTC 1 cut(s) 613
MboI GATC 2 cut(s) 322, 890
MfeI CAATTG 2 cut(s) 90, 942
MluCI AATT 8 cut(s) 77, 90, 226, 357, 413, 625, 942, 950
MlyI GAGTC 1 cut(s) 436
MmeI TCCRAC 2 cut(s) 255, 940
MroXI GAANNNNTTC 1 cut(s) 387
MseI TTAA 2 cut(s) 426, 954
MslI CAYNNNNRTG 3 cut(s) 219, 525, 575
MspA1I CMGCKG 1 cut(s) 634
MspR9I CCNGG 2 cut(s) 477, 1036
MunI CAATTG 2 cut(s) 90, 942
Mva1269I GAATGC 1 cut(s) 57
MvaI CCWGG 2 cut(s) 477, 1036
MvnI CGCG 1 cut(s) 968
MwoI GCNNNNNNNGC 8 cut(s) 101, 230, 481, 637, 692, 701, 776, 875
NcoI CCATGG 1 cut(s) 1101
NdeI CATATG 1 cut(s) 526
NdeII GATC 2 cut(s) 322, 890
NlaIII CATG 4 cut(s) 38, 767, 830, 1105
NlaIV GGNNCC 2 cut(s) 663, 964
NmuCI GTSAC 1 cut(s) 534
NsbI TGCGCA 1 cut(s) 213
PciSI GCTCTTC 1 cut(s) 777
PctI GAATGC 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 387
PfeI GAWTC 7 cut(s) 515, 835, 899, 922, 1031, 1087, 1097
PkrI GCNGC 1 cut(s) 633
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
PpuMI RGGWCCY 1 cut(s) 662
Psp5II RGGWCCY 1 cut(s) 662
Psp6I CCWGG 2 cut(s) 475, 1034
PspGI CCWGG 2 cut(s) 475, 1034
PspN4I GGNNCC 2 cut(s) 663, 964
PspPI GGNCC 3 cut(s) 430, 662, 674
PspPPI RGGWCCY 1 cut(s) 662
RsaI GTAC 2 cut(s) 188, 985
RsaNI GTAC 2 cut(s) 187, 984
RseI CAYNNNNRTG 3 cut(s) 219, 525, 575
SapI GCTCTTC 1 cut(s) 777
SaqAI TTAA 2 cut(s) 426, 954
SatI GCNGC 1 cut(s) 632
Sau3AI GATC 2 cut(s) 322, 890
Sau96I GGNCC 3 cut(s) 430, 662, 674
SchI GAGTC 1 cut(s) 436
ScrFI CCNGG 2 cut(s) 477, 1036
SfaNI GCATC 1 cut(s) 673
SfcI CTRYAG 2 cut(s) 105, 558
SinI GGWCC 2 cut(s) 430, 662
SmiMI CAYNNNNRTG 3 cut(s) 219, 525, 575
Sse9I AATT 8 cut(s) 77, 90, 226, 357, 413, 625, 942, 950
SsiI CCGC 4 cut(s) 613, 634, 913, 966
SspMI CTAG 2 cut(s) 447, 492
StyD4I CCNGG 2 cut(s) 475, 1034
StyI CCWWGG 1 cut(s) 1101
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 1 cut(s) 321
TaqI TCGA 2 cut(s) 65, 159
TaqII GACCGA 1 cut(s) 447
TasI AATT 8 cut(s) 77, 90, 226, 357, 413, 625, 942, 950
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 7 cut(s) 515, 835, 899, 922, 1031, 1087, 1097
Tru1I TTAA 2 cut(s) 426, 954
Tru9I TTAA 2 cut(s) 426, 954
TscAI CASTG 3 cut(s) 577, 852, 885
TseFI GTSAC 1 cut(s) 534
TseI GCWGC 1 cut(s) 631
Tsp45I GTSAC 1 cut(s) 534
TspDTI ATGAA 4 cut(s) 51, 90, 182, 983
TspRI CASTG 3 cut(s) 577, 852, 885
VpaK11BI GGWCC 2 cut(s) 430, 662
XapI RAATTY 1 cut(s) 77
XmnI GAANNNNTTC 1 cut(s) 387
XspI CTAG 2 cut(s) 447, 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.