Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009894

Physical Location & Seq

Genomic Coordinates Reverse (-)

24205872 .. 24208292

Gene Structure 2421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G252500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGAGCGATGGAGGTGGGGAGAGTGGAAGAGAACATGAACAACACAATAGAACGCAGAGAAAATCAAGCGGTGATGATTTTGCCCGAGCTATTGCCAAGATTGCAGTAGCACAAGTATGTGAAATAGTGGGGTTTCAGACTTACCAGTTGTCTGCTCTTGAAACACTGTCGGATGTTGCTGTTCACTACATTCACAACATTGGAAAGACGGCACATTTCTATGCCAATTTATCTGGCAGAATGGATTGTAATGTTTTTGATATCATTCAAGGGTTGGAAGATTTGGGCTTGGCGCAGGGGTTTGCAGGTGCTTCCGATGTTGATCATTGTCTTGCAAGTTCAGGGACGGTTAGGGAAATTGCTCAGTATGTTGGTGAAACTGAGCATATTCCATTTTCCTACTCTATTCCTCAATTCCCAGTTGTTAAGGACCGGAAGCTCACTCCAAGTTTTTTGCAAAGTGGGGTAGAGACACTTGGAGAGCATATACCTATTTGGTTGCCTGCATTTCCTGAACCCCATACATATGTTCCATCACCAATATCCAATGAGAGAGCTAGAGAACTTCACACTGATATGATTGAGCAGAAAAAAAAACAGAGAAATGTGGAGCGGTCTCTATTCAATTTGCAGCGGAGGCTGGTATGCAATGGGTTGGAGGGACCATCTATTGACCCTGGAGATGCTGATAAGGCAAAACAAGCAAGAGAAAGTAACCCTTTTCTTGCTGCTCCTTTGCAATATGGGGAGACAGAAGTATCTCATGTTGCTCTTCCAGCTAAACTTTCAAGTGAAGCAACAGTGGAAAAACTTGTTGCTGAGAACCGTGTCGCAGAGAAGTGTTCTTCAGTGTTGGAGACCTTTGCTCCTGCTATTGAAGCAATGAAGAGCAGCTCATGTGAATCACAGGAGGAACATAAAGAGATTCTTTTGAGCAGGAGACCAACTGTTCAATTTAAGATTGGAATTGCAAAGACGTCCTTTAGTACTATGTTACATTCAAGCCCACATAACAAGGGTTTTCAGAAAAACTATTCCTGGTTTGGAAGAGAAAATGAGAAGGATGAAAAGAAAAAGAGGGCTGAGAAAATTCTGAAGAATTCCATGGAAAACTCACAGGAGCTTGCTCAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

Bromo_TP TAF8_C

Protein Analysis

379

Amino Acids

42.01

Weight (kDa)

6.08

Isoelectric Point (pI)

53.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02160 AT3G02160 AT5G15570
fragaria_vesca	FvH4_6g46720 FvH4_6g46720
malus_domestica	MD09G1068300.v1.1 MD17G1061200.v1.1
prunus_persica	Prupe.3G252500_v2.0.a1
pyrus_communis	pycom12433g00130 pycom17g06110
rosa_chinensis	RchiOBHm_Chr2g0165611
rosa_laevigata	RLG00000021543
rosa_multiflora	Rmu_co8454451.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085690
rosa_rugosa	Rorug02G0516400
rosa_samantha	Rh2AG582700 Rh2BG594800 Rh2CG564600 Rh2DG604600
rosa_wichuraiana	Rw0G016050 Rw2G048600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	296
AatII	GACGTC	1 cut(s)	980
Acc36I	ACCTGC	1 cut(s)	296
AccBSI	CCGCTC	1 cut(s)	613
AciI	CCGC	3 cut(s)	69, 613, 634
AcsI	RAATTY	2 cut(s)	1089, 1099
AcuI	CTGAAG	2 cut(s)	831, 1115
AcyI	GRCGYC	1 cut(s)	977
AfaI	GTAC	1 cut(s)	988
AgsI	TTSAA	7 cut(s)	161, 269, 625, 789, 878, 953, 1002
AjnI	CCWGG	2 cut(s)	676, 1037
AluBI	AGCT	6 cut(s)	89, 439, 557, 779, 894, 1123
AluI	AGCT	6 cut(s)	89, 439, 557, 779, 894, 1123
Alw26I	GTCTC	5 cut(s)	464, 621, 743, 851, 934
Ama87I	CYCGRG	1 cut(s)	84
ApeKI	GCWGC	3 cut(s)	631, 728, 891
ApoI	RAATTY	2 cut(s)	1089, 1099
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	2 cut(s)	430, 662
AsuHPI	GGTGA	3 cut(s)	83, 386, 528
AvaI	CYCGRG	1 cut(s)	84
AvaII	GGWCC	2 cut(s)	430, 662
BaeI	ACNNNNGTAYC	2 cut(s)	741, 774
BbvI	GCAGC	3 cut(s)	643, 715, 903
BccI	CCATC	3 cut(s)	2, 541, 673
BceAI	ACGGC	1 cut(s)	225
BciT130I	CCWGG	2 cut(s)	678, 1039
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	5 cut(s)	464, 621, 743, 851, 934
BfaI	CTAG	1 cut(s)	558
BfuAI	ACCTGC	1 cut(s)	296
BisI	GCNGC	3 cut(s)	632, 729, 892
BlsI	GCNGC	3 cut(s)	633, 730, 893
BmcAI	AGTACT	1 cut(s)	988
Bme1390I	CCNGG	2 cut(s)	678, 1039
Bme18I	GGWCC	2 cut(s)	430, 662
BmeT110I	CYCGRG	1 cut(s)	84
BmgT120I	GGNCC	2 cut(s)	430, 662
BmiI	GGNNCC	1 cut(s)	663
BmrFI	CCNGG	2 cut(s)	678, 1039
BmrI	ACTGGG	1 cut(s)	413
BmsI	GCATC	1 cut(s)	673
BmuI	ACTGGG	1 cut(s)	413
BpmI	CTGGAG	1 cut(s)	699
BsaBI	GATNNNNATC	1 cut(s)	321
BsaHI	GRCGYC	1 cut(s)	977
BsaI	GGTCTC	3 cut(s)	621, 851, 934
BsaJI	CCNNGG	2 cut(s)	676, 1104
BsaWI	WCCGGW	1 cut(s)	432
BsaXI	ACNNNNNCTCC	2 cut(s)	850, 880
Bse1I	ACTGG	2 cut(s)	145, 419
Bse3DI	GCAATG	2 cut(s)	655, 888
Bse8I	GATNNNNATC	1 cut(s)	321
BseBI	CCWGG	2 cut(s)	678, 1039
BseDI	CCNNGG	2 cut(s)	676, 1104
BseGI	GGATG	2 cut(s)	178, 1069
BseJI	GATNNNNATC	1 cut(s)	321
BseMI	GCAATG	2 cut(s)	655, 888
BseMII	CTCAG	4 cut(s)	372, 377, 810, 1074
BseNI	ACTGG	2 cut(s)	145, 419
BseXI	GCAGC	3 cut(s)	643, 715, 903
BsiHKCI	CYCGRG	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	433
BslFI	GGGAC	2 cut(s)	358, 675
BsmAI	GTCTC	5 cut(s)	464, 621, 743, 851, 934
BsmFI	GGGAC	2 cut(s)	358, 675
Bso31I	GGTCTC	3 cut(s)	621, 851, 934
BsoBI	CYCGRG	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	322
Bsp19I	CCATGG	1 cut(s)	1104
BspACI	CCGC	3 cut(s)	69, 613, 634
BspCNI	CTCAG	4 cut(s)	373, 376, 811, 1075
BspLI	GGNNCC	1 cut(s)	663
BspMI	ACCTGC	1 cut(s)	296
BspQI	GCTCTTC	2 cut(s)	777, 881
BspTNI	GGTCTC	3 cut(s)	621, 851, 934
BsrBI	CCGCTC	1 cut(s)	613
BsrDI	GCAATG	2 cut(s)	655, 888
BsrI	ACTGG	2 cut(s)	145, 419
BssECI	CCNNGG	2 cut(s)	676, 1104
BssMI	GATC	1 cut(s)	322
BssNI	GRCGYC	1 cut(s)	977
BssT1I	CCWWGG	1 cut(s)	1104
Bst2UI	CCWGG	2 cut(s)	678, 1039
Bst4CI	ACNGT	5 cut(s)	168, 349, 802, 827, 949
Bst6I	CTCTTC	4 cut(s)	22, 777, 881, 1042
BstACI	GRCGYC	1 cut(s)	977
BstC8I	GCNNGC	2 cut(s)	504, 1125
BstDEI	CTNAG	5 cut(s)	363, 381, 819, 1083, 1128
BstDSI	CCRYGG	1 cut(s)	1104
BstF5I	GGATG	2 cut(s)	178, 1069
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	1 cut(s)	325
BstMAI	GTCTC	5 cut(s)	464, 621, 743, 851, 934
BstMBI	GATC	1 cut(s)	322
BstMWI	GCNNNNNNNGC	6 cut(s)	101, 637, 692, 701, 776, 878
BstNI	CCWGG	2 cut(s)	678, 1039
BstSCI	CCNGG	2 cut(s)	676, 1037
BstV1I	GCAGC	3 cut(s)	643, 715, 903
BtgI	CCRYGG	1 cut(s)	1104
BtgZI	GCGATG	1 cut(s)	21
BtsCI	GGATG	2 cut(s)	178, 1069
BtsIMutI	CAGTG	4 cut(s)	164, 570, 807, 855
BveI	ACCTGC	1 cut(s)	296
Cac8I	GCNNGC	2 cut(s)	504, 1125
CfoI	GCGC	1 cut(s)	295
Cfr13I	GGNCC	2 cut(s)	430, 662
Csp6I	GTAC	1 cut(s)	987
CviAII	CATG	4 cut(s)	35, 764, 897, 1105
CviQI	GTAC	1 cut(s)	987
DdeI	CTNAG	5 cut(s)	363, 381, 819, 1083, 1128
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
Eam1104I	CTCTTC	4 cut(s)	22, 777, 881, 1042
EarI	CTCTTC	4 cut(s)	22, 777, 881, 1042
Eco130I	CCWWGG	1 cut(s)	1104
Eco31I	GGTCTC	3 cut(s)	621, 851, 934
Eco32I	GATATC	1 cut(s)	262
Eco47I	GGWCC	2 cut(s)	430, 662
Eco57I	CTGAAG	2 cut(s)	831, 1115
Eco88I	CYCGRG	1 cut(s)	84
EcoRI	GAATTC	1 cut(s)	1099
EcoRII	CCWGG	2 cut(s)	676, 1037
EcoRV	GATATC	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	1104
ErhI	CCWWGG	1 cut(s)	1104
FaeI	CATG	4 cut(s)	38, 767, 900, 1108
FalI	AAGNNNNNCTT	6 cut(s)	703, 735, 912, 944, 965, 997
FaqI	GGGAC	2 cut(s)	358, 675
FatI	CATG	4 cut(s)	34, 763, 896, 1104
FauNDI	CATATG	1 cut(s)	526
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	3 cut(s)	632, 729, 892
FokI	GGATG	2 cut(s)	185, 1076
Fsp4HI	GCNGC	3 cut(s)	632, 729, 892
FspBI	CTAG	1 cut(s)	558
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	3 cut(s)	632, 729, 892
GsuI	CTGGAG	1 cut(s)	699
HapII	CCGG	1 cut(s)	433
HhaI	GCGC	1 cut(s)	295
Hin1I	GRCGYC	1 cut(s)	977
Hin1II	CATG	4 cut(s)	38, 767, 900, 1108
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HinfI	GANTC	2 cut(s)	902, 925
HpaII	CCGG	1 cut(s)	433
HphI	GGTGA	3 cut(s)	83, 386, 528
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	5 cut(s)	138, 172, 316, 1026, 1095
Hpy188III	TCNNGA	2 cut(s)	158, 512
Hpy8I	GTNNAC	1 cut(s)	184
HpyAV	CCTTC	1 cut(s)	1054
HpyCH4III	ACNGT	5 cut(s)	168, 349, 802, 827, 949
HpyCH4IV	ACGT	1 cut(s)	977
HpyCH4V	TGCA	9 cut(s)	104, 305, 335, 457, 506, 631, 648, 739, 971
HpyF10VI	GCNNNNNNNGC	6 cut(s)	101, 637, 692, 701, 776, 878
HpyF3I	CTNAG	5 cut(s)	363, 381, 819, 1083, 1128
HpySE526I	ACGT	1 cut(s)	977
Hsp92I	GRCGYC	1 cut(s)	977
Hsp92II	CATG	4 cut(s)	38, 767, 900, 1108
HspAI	GCGC	1 cut(s)	293
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	1 cut(s)	322
LguI	GCTCTTC	2 cut(s)	777, 881
LmnI	GCTCC	4 cut(s)	610, 736, 871, 1120
Lsp1109I	GCAGC	3 cut(s)	643, 715, 903
LweI	GCATC	1 cut(s)	673
MaeI	CTAG	1 cut(s)	558
MaeII	ACGT	1 cut(s)	977
MaeIII	GTNAC	2 cut(s)	713, 993
MalI	GATC	1 cut(s)	324
MbiI	CCGCTC	1 cut(s)	613
MboI	GATC	1 cut(s)	322
MboII	GAAGA	7 cut(s)	39, 290, 764, 837, 898, 1059, 1108
MluCI	AATT	8 cut(s)	226, 357, 413, 625, 953, 966, 1089, 1099
MmeI	TCCRAC	4 cut(s)	150, 255, 636, 834
MnlI	CCTC	6 cut(s)	5, 420, 630, 652, 904, 1071
MseI	TTAA	2 cut(s)	426, 957
MslI	CAYNNNNRTG	4 cut(s)	115, 219, 525, 575
MspA1I	CMGCKG	1 cut(s)	634
MspI	CCGG	1 cut(s)	433
MspR9I	CCNGG	2 cut(s)	678, 1039
MvaI	CCWGG	2 cut(s)	678, 1039
MwoI	GCNNNNNNNGC	6 cut(s)	101, 637, 692, 701, 776, 878
NcoI	CCATGG	1 cut(s)	1104
NdeI	CATATG	1 cut(s)	526
NdeII	GATC	1 cut(s)	322
NlaIII	CATG	4 cut(s)	38, 767, 900, 1108
NlaIV	GGNNCC	1 cut(s)	663
PaqCI	CACCTGC	1 cut(s)	296
PciSI	GCTCTTC	2 cut(s)	777, 881
PfeI	GAWTC	2 cut(s)	902, 925
PkrI	GCNGC	3 cut(s)	633, 730, 893
Psp6I	CCWGG	2 cut(s)	676, 1037
PspGI	CCWGG	2 cut(s)	676, 1037
PspN4I	GGNNCC	1 cut(s)	663
PspPI	GGNCC	2 cut(s)	430, 662
RsaI	GTAC	1 cut(s)	988
RsaNI	GTAC	1 cut(s)	987
RseI	CAYNNNNRTG	4 cut(s)	115, 219, 525, 575
SapI	GCTCTTC	2 cut(s)	777, 881
SaqAI	TTAA	2 cut(s)	426, 957
SatI	GCNGC	3 cut(s)	632, 729, 892
Sau3AI	GATC	1 cut(s)	322
Sau96I	GGNCC	2 cut(s)	430, 662
ScaI	AGTACT	1 cut(s)	988
ScrFI	CCNGG	2 cut(s)	678, 1039
SfaNI	GCATC	1 cut(s)	673
SinI	GGWCC	2 cut(s)	430, 662
SmiMI	CAYNNNNRTG	4 cut(s)	115, 219, 525, 575
Sse9I	AATT	8 cut(s)	226, 357, 413, 625, 953, 966, 1089, 1099
SsiI	CCGC	3 cut(s)	69, 613, 634
SspMI	CTAG	1 cut(s)	558
StyD4I	CCNGG	2 cut(s)	676, 1037
StyI	CCWWGG	1 cut(s)	1104
TaaI	ACNGT	5 cut(s)	168, 349, 802, 827, 949
TaiI	ACGT	1 cut(s)	980
TasI	AATT	8 cut(s)	226, 357, 413, 625, 953, 966, 1089, 1099
TatI	WGTACW	1 cut(s)	986
TfiI	GAWTC	2 cut(s)	902, 925
Tru1I	TTAA	2 cut(s)	426, 957
Tru9I	TTAA	2 cut(s)	426, 957
TscAI	CASTG	4 cut(s)	171, 577, 807, 855
TseI	GCWGC	3 cut(s)	631, 728, 891
TspDTI	ATGAA	3 cut(s)	51, 899, 1080
TspRI	CASTG	4 cut(s)	171, 577, 807, 855
VpaK11BI	GGWCC	2 cut(s)	430, 662
XapI	RAATTY	2 cut(s)	1089, 1099
XspI	CTAG	1 cut(s)	558
ZraI	GACGTC	1 cut(s)	978
ZrmI	AGTACT	1 cut(s)	988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.