AT5G15570

Transcription initiation factor TFIID subunit 8-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009894
Physical Location & Seq
Forward (+)
5066204 .. 5068199
1996 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G15570.1

Sequence Viewer

Length: 1146 bp
ATGATCAATGGAGGTGGAGAGGGTGGAAGTCAGCGGAGAGAACTACAAGGGAAAAGAAGTATGTCTCGTGGCAATGATTTTGCGTACGCCCTAGCTAGAATGGCCACGGCGCAGATATGCGAGAGCGTTGAGATTAACAGTTACCAGGAATCATCACAGTCACGCGAAGGTTTGAGATTCAGTTCTTTTCAAGAGACTGCTCTTGAAACACTAACCGATGTAGTGATCCAATACATTCAGAACATTGGGAAGACTGCACAGTTTTATGTTAATATGGCTGGTAGAGTAGAAAGTAATGCTCTGGATATTGTTCAAGCACTGGAGGATTTGGGATCTGGATTGGGTTTCGACGGTGCTCATGATGTTGAGCATTGTCTTGCTGATTCTGGTGTCGTCAAGGATATTATTCGTTATACAGGAGAAGCGGAGGAGATTCCTTTCGTTTATTCTCTTCCCCGTTTCCCTTTTAACAGAGGAAAAAGACCAGCTCCTAGCTTTTCCGATATTGGAGTAGAGCCACCAGATGAGCATATTCCTGTTTGGCTTCCTGCGTTTCCTGAAACCAAGATGTCTAACGGGTCAGAGGAGATTAATGTTGACAAAATAGAAAGGGATGTGCAGAGTAGAGATAATGGATCATCTTTGATGAGTGTGCAGCAGTCTGTCGATGTTGATAGGTTAAAAGTTCAGAAATCCATGGATCAAAAGGATGTTCAGAAGCCAATAGAGGAACCGGAAGGTAACCCATTTCTTGCTGCACCAATTTGGGTTGGAGAGAAGAATGTGTCACTGTCACGTGTGGTTTGCCCGTCAGAGCTTAGGAAAGAAGAAATTAGTACCAACCACCTTCCTGAGAAACATATGAGCATGAGCCATCACATTCCAGCACTTGAGGCATATGCTCTATCTGATAAGATCAACGACAAGAACAGATTAGCTGGAATGGAAGATGAACAGAAAAGAGATGGTGCAAGAACACAAGGAGCTTTGCTTCGTTTCAAGATTGGGACTCGAAAAGCCTCTGAATGTTGGAAGATAAATCAGTGCTTAGAGGAAAAGGGTTGGTTTAAAGAGGATGGAAACAAGAGGGAGAAGAAGGTAGAACGCGAAGAAAAGAGCGAAAGTATTGACGCAGATGTAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromo_TP TAF8_C

Protein Analysis

381

Amino Acids

42.67

Weight (kDa)

5.18

Isoelectric Point (pI)

59.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromo_TP PF07524 60 - 111 2.2e-13 Bromodomain associated
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009894)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02160 AT3G02160 AT5G15570
fragaria_vesca FvH4_6g46720 FvH4_6g46720
malus_domestica MD09G1068300.v1.1 MD17G1061200.v1.1
prunus_persica Prupe.3G252500_v2.0.a1
pyrus_communis pycom12433g00130 pycom17g06110
rosa_chinensis RchiOBHm_Chr2g0165611
rosa_laevigata RLG00000021543
rosa_multiflora Rmu_co8454451.1_g000001
rosa_roxburghii Rroxscaffold_2G00085690
rosa_rugosa Rorug02G0516400
rosa_samantha Rh2AG582700 Rh2BG594800 Rh2CG564600 Rh2DG604600
rosa_wichuraiana Rw0G016050 Rw2G048600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 165, 1107
AciI CCGC 2 cut(s) 34, 425
AclWI GGATC 4 cut(s) 220, 340, 643, 708
AcoI YGGCCR 1 cut(s) 102
AcvI CACGTG 1 cut(s) 797
AfaI GTAC 2 cut(s) 86, 838
AflIII ACRYGT 1 cut(s) 796
AgsI TTSAA 4 cut(s) 191, 206, 314, 1000
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 6 cut(s) 95, 488, 495, 817, 938, 986
AluI AGCT 6 cut(s) 95, 488, 495, 817, 938, 986
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 2 cut(s) 69, 188
AlwI GGATC 4 cut(s) 220, 340, 643, 708
AoxI GGCC 1 cut(s) 102
ApeKI GCWGC 2 cut(s) 655, 755
AseI ATTAAT 1 cut(s) 591
AspLEI GCGC 1 cut(s) 112
BalI TGGCCA 1 cut(s) 104
BauI CACGAG 1 cut(s) 66
BbrPI CACGTG 1 cut(s) 797
BbsI GAAGAC 1 cut(s) 257
Bbv12I GWGCWC 1 cut(s) 358
BbvI GCAGC 2 cut(s) 667, 742
BccI CCATC 3 cut(s) 882, 959, 1070
BceAI ACGGC 1 cut(s) 123
BciT130I CCWGG 1 cut(s) 146
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 2 cut(s) 69, 188
BfaI CTAG 3 cut(s) 92, 96, 492
BisI GCNGC 2 cut(s) 656, 756
BlsI GCNGC 2 cut(s) 657, 757
Bme1390I CCNGG 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 732
BmrFI CCNGG 1 cut(s) 146
BpiI GAAGAC 1 cut(s) 257
BpmI CTGGAG 1 cut(s) 341
Bpu10I CCTNAGC 1 cut(s) 818
BpuEI CTTGAG 1 cut(s) 911
BsaAI YACGTR 1 cut(s) 797
BsaJI CCNNGG 2 cut(s) 105, 696
BsaWI WCCGGW 1 cut(s) 733
Bse1I ACTGG 1 cut(s) 324
Bse3DI GCAATG 1 cut(s) 79
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 2 cut(s) 105, 696
BseGI GGATG 3 cut(s) 619, 715, 1081
BseMI GCAATG 1 cut(s) 79
BseMII CTCAG 1 cut(s) 843
BseNI ACTGG 1 cut(s) 324
BseRI GAGGAG 2 cut(s) 443, 599
BseXI GCAGC 2 cut(s) 667, 742
BsgI GTGCAG 4 cut(s) 240, 638, 674, 741
Bsh1236I CGCG 2 cut(s) 165, 1107
BshFI GGCC 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 358
BsiSI CCGG 1 cut(s) 734
BsiWI CGTACG 1 cut(s) 84
BslFI GGGAC 1 cut(s) 1021
BsmAI GTCTC 2 cut(s) 69, 188
BsmFI GGGAC 1 cut(s) 1021
BsnI GGCC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 358
Bsp143I GATC 6 cut(s) 3, 225, 332, 635, 700, 915
Bsp19I CCATGG 1 cut(s) 696
BspACI CCGC 2 cut(s) 34, 425
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 1 cut(s) 844
BspFNI CGCG 2 cut(s) 165, 1107
BspHI TCATGA 1 cut(s) 358
BspLI GGNNCC 1 cut(s) 732
BspPI GGATC 4 cut(s) 220, 340, 643, 708
BsrDI GCAATG 1 cut(s) 79
BsrI ACTGG 1 cut(s) 324
BssECI CCNNGG 2 cut(s) 105, 696
BssMI GATC 6 cut(s) 3, 225, 332, 635, 700, 915
BssSI CACGAG 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 696
Bst2BI CACGAG 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 5 cut(s) 140, 159, 261, 353, 792
Bst6I CTCTTC 1 cut(s) 456
BstBAI YACGTR 1 cut(s) 797
BstDEI CTNAG 3 cut(s) 818, 852, 1048
BstDSI CCRYGG 2 cut(s) 105, 696
BstEII GGTNACC 1 cut(s) 740
BstF5I GGATG 3 cut(s) 619, 715, 1081
BstFNI CGCG 2 cut(s) 165, 1107
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 6 cut(s) 6, 228, 335, 638, 703, 918
BstMAI GTCTC 2 cut(s) 69, 188
BstMBI GATC 6 cut(s) 3, 225, 332, 635, 700, 915
BstMWI GCNNNNNNNGC 2 cut(s) 101, 893
BstNI CCWGG 1 cut(s) 146
BstPI GGTNACC 1 cut(s) 740
BstSCI CCNGG 1 cut(s) 144
BstUI CGCG 2 cut(s) 165, 1107
BstV1I GCAGC 2 cut(s) 667, 742
BstV2I GAAGAC 1 cut(s) 257
BstX2I RGATCY 1 cut(s) 332
BstYI RGATCY 1 cut(s) 332
BsuRI GGCC 1 cut(s) 104
BtgI CCRYGG 2 cut(s) 105, 696
BtsCI GGATG 3 cut(s) 619, 715, 1081
BtsIMutI CAGTG 3 cut(s) 317, 788, 1049
CciI TCATGA 1 cut(s) 358
CfoI GCGC 1 cut(s) 112
CseI GACGC 1 cut(s) 1139
Csp6I GTAC 2 cut(s) 85, 837
CspCI CAANNNNNGTGG 1 cut(s) 30
CviAII CATG 3 cut(s) 359, 697, 868
CviQI GTAC 2 cut(s) 85, 837
DdeI CTNAG 3 cut(s) 818, 852, 1048
DpnI GATC 6 cut(s) 5, 227, 334, 637, 702, 917
DpnII GATC 6 cut(s) 3, 225, 332, 635, 700, 915
DraI TTTAAA 1 cut(s) 1069
EaeI YGGCCR 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 456
Eco130I CCWWGG 1 cut(s) 696
Eco72I CACGTG 1 cut(s) 797
Eco91I GGTNACC 1 cut(s) 740
EcoO65I GGTNACC 1 cut(s) 740
EcoRII CCWGG 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 696
ErhI CCWWGG 1 cut(s) 696
FaeI CATG 3 cut(s) 362, 700, 871
FaqI GGGAC 1 cut(s) 1021
FatI CATG 3 cut(s) 358, 696, 867
FauNDI CATATG 2 cut(s) 861, 898
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 656, 756
FokI GGATG 3 cut(s) 626, 722, 1088
Fsp4HI GCNGC 2 cut(s) 656, 756
FspBI CTAG 3 cut(s) 92, 96, 492
GlaI GCGC 1 cut(s) 111
GluI GCNGC 2 cut(s) 656, 756
GsuI CTGGAG 1 cut(s) 341
HaeIII GGCC 1 cut(s) 104
HapII CCGG 1 cut(s) 734
HgaI GACGC 1 cut(s) 1139
HhaI GCGC 1 cut(s) 112
Hin1II CATG 3 cut(s) 362, 700, 871
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HinfI GANTC 5 cut(s) 149, 177, 383, 433, 1009
HpaII CCGG 1 cut(s) 734
Hpy166II GTNNAC 1 cut(s) 598
Hpy188I TCNGA 8 cut(s) 240, 502, 583, 690, 717, 814, 910, 1024
Hpy188III TCNNGA 8 cut(s) 191, 203, 302, 336, 359, 557, 851, 1000
Hpy8I GTNNAC 1 cut(s) 598
Hpy99I CGWCG 1 cut(s) 353
HpyAV CCTTC 4 cut(s) 161, 731, 857, 1090
HpyCH4III ACNGT 5 cut(s) 140, 159, 261, 353, 792
HpyCH4IV ACGT 1 cut(s) 796
HpyCH4V TGCA 5 cut(s) 257, 619, 655, 758, 971
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 893
HpyF3I CTNAG 3 cut(s) 818, 852, 1048
HpySE526I ACGT 1 cut(s) 796
Hsp92II CATG 3 cut(s) 362, 700, 871
HspAI GCGC 1 cut(s) 110
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 6 cut(s) 3, 225, 332, 635, 700, 915
LmnI GCTCC 2 cut(s) 493, 983
Lsp1109I GCAGC 2 cut(s) 667, 742
MaeI CTAG 3 cut(s) 92, 96, 492
MaeII ACGT 1 cut(s) 796
MaeIII GTNAC 5 cut(s) 140, 159, 740, 786, 792
MalI GATC 6 cut(s) 5, 227, 334, 637, 702, 917
MboI GATC 6 cut(s) 3, 225, 332, 635, 700, 915
MboII GAAGA 8 cut(s) 262, 443, 790, 839, 959, 1045, 1105, 1121
MflI RGATCY 1 cut(s) 332
MhlI GDGCHC 1 cut(s) 358
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 2 cut(s) 762, 831
MluNI TGGCCA 1 cut(s) 104
MlyI GAGTC 1 cut(s) 1003
MmeI TCCRAC 2 cut(s) 751, 1010
Mox20I TGGCCA 1 cut(s) 104
MscI TGGCCA 1 cut(s) 104
MseI TTAA 6 cut(s) 135, 270, 468, 591, 680, 1068
Msp20I TGGCCA 1 cut(s) 104
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 1 cut(s) 734
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
MvnI CGCG 2 cut(s) 165, 1107
MwoI GCNNNNNNNGC 2 cut(s) 101, 893
NcoI CCATGG 1 cut(s) 696
NdeI CATATG 2 cut(s) 861, 898
NdeII GATC 6 cut(s) 3, 225, 332, 635, 700, 915
NlaIII CATG 3 cut(s) 362, 700, 871
NlaIV GGNNCC 1 cut(s) 732
NmuCI GTSAC 3 cut(s) 159, 786, 792
PagI TCATGA 1 cut(s) 358
PfeI GAWTC 4 cut(s) 149, 177, 383, 433
Pfl23II CGTACG 1 cut(s) 84
PkrI GCNGC 2 cut(s) 657, 757
PleI GAGTC 1 cut(s) 1003
PmaCI CACGTG 1 cut(s) 797
PmlI CACGTG 1 cut(s) 797
PpsI GAGTC 1 cut(s) 1003
Ppu21I YACGTR 1 cut(s) 797
PshBI ATTAAT 1 cut(s) 591
Psp6I CCWGG 1 cut(s) 144
PspCI CACGTG 1 cut(s) 797
PspEI GGTNACC 1 cut(s) 740
PspGI CCWGG 1 cut(s) 144
PspLI CGTACG 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 732
PsuI RGATCY 1 cut(s) 332
RsaI GTAC 2 cut(s) 86, 838
RsaNI GTAC 2 cut(s) 85, 837
SaqAI TTAA 6 cut(s) 135, 270, 468, 591, 680, 1068
SatI GCNGC 2 cut(s) 656, 756
Sau3AI GATC 6 cut(s) 3, 225, 332, 635, 700, 915
SchI GAGTC 1 cut(s) 1003
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 1 cut(s) 358
SmlI CTYRAG 1 cut(s) 890
SmoI CTYRAG 1 cut(s) 890
Sse9I AATT 2 cut(s) 762, 831
SsiI CCGC 2 cut(s) 34, 425
SspMI CTAG 3 cut(s) 92, 96, 492
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 1 cut(s) 696
TaaI ACNGT 5 cut(s) 140, 159, 261, 353, 792
TaiI ACGT 1 cut(s) 799
TaqI TCGA 3 cut(s) 348, 666, 1012
TasI AATT 2 cut(s) 762, 831
TfiI GAWTC 4 cut(s) 149, 177, 383, 433
Tru1I TTAA 6 cut(s) 135, 270, 468, 591, 680, 1068
Tru9I TTAA 6 cut(s) 135, 270, 468, 591, 680, 1068
TscAI CASTG 3 cut(s) 324, 795, 1049
TseFI GTSAC 3 cut(s) 159, 786, 792
TseI GCWGC 2 cut(s) 655, 755
Tsp45I GTSAC 3 cut(s) 159, 786, 792
TspDTI ATGAA 1 cut(s) 966
TspRI CASTG 3 cut(s) 324, 795, 1049
VspI ATTAAT 1 cut(s) 591
XspI CTAG 3 cut(s) 92, 96, 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.