FvH4_6g46720

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0009894
Physical Location & Seq
Reverse (-)
35558626 .. 35562064
3439 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g46720.t1

Sequence Viewer

Length: 1140 bp
ATGAGCGATGGAGGTGGGGAGAGTGCAAGAGAGCATGAGCAATCCAATAGAATCACACTGAGAAAACCGAGCTGCGGCGATGACTTTGCGCGAGCTGTTTCCAAGATTGCTGTAGCGCAGGTGTGCGAGGTTGTGGGGTACCAGAGTTTCCAGTTGTCTGCGCTTGAGACACTGTCGGATGTTGCTGTTCAGTACATTCGTAACGTTGGGAAGACGGCACATTTGTATGCAAATTTGTCTGGGAGGACGGATTGTAATGTGTTTGATATCATTCAAGGGTTGGAAGATTTGAGCGCGGCTCAGGGGTTTGCAGGCGCTTCGGATATTAATCATTGTCTTGCAAGTTCGGGGACGATAAAGGAGATTTCTCAGTATGTTGCTGAAGCCGAGCATGTTCCATTTGCCTACACTATTCCTCGGTTCCCAGTTGTTAAGGACAGGAAGCTGACTCCGAGTTTTTGGCAAAGCGGGGAAGAGACTCCTGGAGAGCATATACCTACTTGGTTGCCTGCATTTCCTGAACCACATACTTATTCCCGATCAACAACATGCAATGAGGGAGCCACAGAGCCTGACAGTGCATTGGTTGAGCAGGAAAAACAACAAAGAAATGTAGAGCGGGCCATGCTGAATTTTCATCATAGGCTAGTATGTAATGGGATGGAAGGACCCTCTCTTGACCCTGGGGATGGTGTAAACGCGAAACAAGCAAGAGAAAGCAACCCTTTTCTTGCTACACCTCTGCAATTTGGGGAGACAGAAGTATCTCAGGTTACTCTTCCAGCTAAACTGTCAATTGAGGCAACAGAGGAAACTCTTAAGGCTGAGAACCATGCCAAGGATAAATGTTCTTCAGTGCTGGAGACCTTTGCCCCAGCCATTGAAGCAATCAAGAACAAGCCGTTTGAAGTAGAGGAGGATCAAAAGACTCTTTTGAGCAGGAAACCCACTGTGCAATTTAAGATTGGGATGTCAAAGAAGTCTTTGGGTACTATGTTATATTCAGGGCCACATAAGAAGGGTTTTGAGGAAGTGTATCCCTGGTTTGGGAGAGAAAATGAAAAGGATGAAAAGAAAAGGAGGGCTGAAAAAATACTCAAGAACTCCATGGAAAACTCACAGGAGCTTGCTCAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromo_TP TAF8_C

Protein Analysis

380

Amino Acids

41.95

Weight (kDa)

5.52

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromo_TP PF07524 28 - 98 8.4e-22 Bromodomain associated
TAF8_C PF10406 164 - 212 1.7e-11 Transcription factor TFIID complex subunit 8 C-term
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009894)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02160 AT3G02160 AT5G15570
fragaria_vesca FvH4_6g46720 FvH4_6g46720
malus_domestica MD09G1068300.v1.1 MD17G1061200.v1.1
prunus_persica Prupe.3G252500_v2.0.a1
pyrus_communis pycom12433g00130 pycom17g06110
rosa_chinensis RchiOBHm_Chr2g0165611
rosa_laevigata RLG00000021543
rosa_multiflora Rmu_co8454451.1_g000001
rosa_roxburghii Rroxscaffold_2G00085690
rosa_rugosa Rorug02G0516400
rosa_samantha Rh2AG582700 Rh2BG594800 Rh2CG564600 Rh2DG604600
rosa_wichuraiana Rw0G016050 Rw2G048600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 109
Acc36I ACCTGC 1 cut(s) 109
Acc65I GGTACC 1 cut(s) 138
AccB1I GGYRCC 1 cut(s) 138
AccBSI CCGCTC 1 cut(s) 619
AccII CGCG 3 cut(s) 91, 296, 701
AciI CCGC 4 cut(s) 75, 296, 468, 619
AclI AACGTT 1 cut(s) 204
AclWI GGATC 1 cut(s) 927
AcsI RAATTY 2 cut(s) 232, 631
AcuI CTGAAG 2 cut(s) 402, 837
AfaI GTAC 3 cut(s) 140, 194, 991
AfiI CCNNNNNNNGG 5 cut(s) 74, 689, 838, 1046, 1047
AflII CTTAAG 1 cut(s) 818
AgsI TTSAA 3 cut(s) 275, 884, 908
AjnI CCWGG 3 cut(s) 481, 682, 1040
AluBI AGCT 5 cut(s) 72, 95, 445, 785, 1126
AluI AGCT 5 cut(s) 72, 95, 445, 785, 1126
Alw26I GTCTC 4 cut(s) 161, 470, 749, 857
AlwI GGATC 1 cut(s) 927
AlwNI CAGNNNCTG 1 cut(s) 572
AoxI GGCC 2 cut(s) 621, 1007
ApeKI GCWGC 1 cut(s) 72
ApoI RAATTY 2 cut(s) 232, 631
ArsI GACNNNNNNTTYG 2 cut(s) 205, 237
AseI ATTAAT 1 cut(s) 327
Asp718I GGTACC 1 cut(s) 138
AspLEI GCGC 5 cut(s) 91, 118, 163, 296, 317
AspS9I GGNCC 3 cut(s) 621, 668, 1007
AvaII GGWCC 1 cut(s) 668
BaeI ACNNNNGTAYC 4 cut(s) 130, 163, 747, 780
BanI GGYRCC 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 218
BbvI GCAGC 1 cut(s) 59
BccI CCATC 3 cut(s) 2, 655, 683
BceAI ACGGC 2 cut(s) 231, 886
BcgI CGANNNNNNTGC 4 cut(s) 68, 102, 300, 334
BciT130I CCWGG 3 cut(s) 483, 684, 1042
BciVI GTATCC 1 cut(s) 1047
BcoDI GTCTC 4 cut(s) 161, 470, 749, 857
BfaI CTAG 1 cut(s) 647
BfmI CTRYAG 1 cut(s) 111
BfoI RGCGCY 1 cut(s) 318
BfrI CTTAAG 1 cut(s) 818
BfuAI ACCTGC 1 cut(s) 109
BfuI GTATCC 1 cut(s) 1047
BisI GCNGC 3 cut(s) 73, 76, 297
BlsI GCNGC 3 cut(s) 74, 77, 298
Bme1390I CCNGG 3 cut(s) 483, 684, 1042
Bme18I GGWCC 1 cut(s) 668
BmgT120I GGNCC 3 cut(s) 621, 668, 1007
BmiI GGNNCC 4 cut(s) 140, 422, 562, 670
BmrFI CCNGG 3 cut(s) 483, 684, 1042
BmrI ACTGGG 1 cut(s) 419
BmuI ACTGGG 1 cut(s) 419
BpiI GAAGAC 1 cut(s) 218
BplI GAGNNNNNCTC 2 cut(s) 283, 315
BpmI CTGGAG 2 cut(s) 504, 881
Bpu10I CCTNAGC 1 cut(s) 300
BpuEI CTTGAG 2 cut(s) 185, 1082
BsaBI GATNNNNATC 1 cut(s) 327
BsaI GGTCTC 1 cut(s) 857
BsaJI CCNNGG 6 cut(s) 416, 682, 683, 837, 1040, 1107
Bsc4I CCNNNNNNNGG 5 cut(s) 74, 689, 838, 1046, 1047
Bse1I ACTGG 2 cut(s) 151, 425
Bse3DI GCAATG 1 cut(s) 559
Bse8I GATNNNNATC 1 cut(s) 327
BseBI CCWGG 3 cut(s) 483, 684, 1042
BseDI CCNNGG 6 cut(s) 416, 682, 683, 837, 1040, 1107
BseGI GGATG 5 cut(s) 184, 666, 694, 975, 1072
BseJI GATNNNNATC 1 cut(s) 327
BseLI CCNNNNNNNGG 5 cut(s) 74, 689, 838, 1046, 1047
BseMI GCAATG 1 cut(s) 559
BseMII CTCAG 5 cut(s) 50, 314, 383, 782, 816
BseNI ACTGG 2 cut(s) 151, 425
BseRI GAGGAG 1 cut(s) 929
BseXI GCAGC 1 cut(s) 59
BseYI CCCAGC 1 cut(s) 874
Bsh1236I CGCG 3 cut(s) 91, 296, 701
BshFI GGCC 2 cut(s) 623, 1009
BshNI GGYRCC 1 cut(s) 138
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 5 cut(s) 74, 689, 838, 1046, 1047
BsmAI GTCTC 4 cut(s) 161, 470, 749, 857
BsmFI GGGAC 1 cut(s) 364
BsnI GGCC 2 cut(s) 623, 1009
Bso31I GGTCTC 1 cut(s) 857
Bsp143I GATC 2 cut(s) 539, 919
Bsp19I CCATGG 1 cut(s) 1107
BspACI CCGC 4 cut(s) 75, 296, 468, 619
BspANI GGCC 2 cut(s) 623, 1009
BspCNI CTCAG 5 cut(s) 51, 313, 382, 781, 817
BspFNI CGCG 3 cut(s) 91, 296, 701
BspLI GGNNCC 4 cut(s) 140, 422, 562, 670
BspMI ACCTGC 1 cut(s) 109
BspPI GGATC 1 cut(s) 927
BspT107I GGYRCC 1 cut(s) 138
BspTI CTTAAG 1 cut(s) 818
BspTNI GGTCTC 1 cut(s) 857
BsrBI CCGCTC 1 cut(s) 619
BsrDI GCAATG 1 cut(s) 559
BsrI ACTGG 2 cut(s) 151, 425
BssECI CCNNGG 6 cut(s) 416, 682, 683, 837, 1040, 1107
BssMI GATC 2 cut(s) 539, 919
BssT1I CCWWGG 2 cut(s) 837, 1107
Bst2UI CCWGG 3 cut(s) 483, 684, 1042
Bst4CI ACNGT 4 cut(s) 174, 578, 792, 952
Bst6I CTCTTC 2 cut(s) 468, 783
BstAFI CTTAAG 1 cut(s) 818
BstC8I GCNNGC 5 cut(s) 93, 313, 510, 621, 1128
BstDEI CTNAG 6 cut(s) 59, 300, 369, 768, 825, 1131
BstDSI CCRYGG 1 cut(s) 1107
BstF5I GGATG 5 cut(s) 184, 666, 694, 975, 1072
BstFNI CGCG 3 cut(s) 91, 296, 701
BstH2I RGCGCY 1 cut(s) 318
BstHHI GCGC 5 cut(s) 91, 118, 163, 296, 317
BstKTI GATC 2 cut(s) 542, 922
BstMAI GTCTC 4 cut(s) 161, 470, 749, 857
BstMBI GATC 2 cut(s) 539, 919
BstMWI GCNNNNNNNGC 3 cut(s) 625, 707, 884
BstNI CCWGG 3 cut(s) 483, 684, 1042
BstNSI RCATGY 2 cut(s) 395, 552
BstSCI CCNGG 3 cut(s) 481, 682, 1040
BstSFI CTRYAG 1 cut(s) 111
BstUI CGCG 3 cut(s) 91, 296, 701
BstV1I GCAGC 1 cut(s) 59
BstV2I GAAGAC 1 cut(s) 218
BsuI GTATCC 1 cut(s) 1047
BsuRI GGCC 2 cut(s) 623, 1009
BtgI CCRYGG 1 cut(s) 1107
BtgZI GCGATG 2 cut(s) 21, 93
BtsCI GGATG 5 cut(s) 184, 666, 694, 975, 1072
BtsIMutI CAGTG 5 cut(s) 56, 170, 583, 861, 948
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 5 cut(s) 93, 313, 510, 621, 1128
CaiI CAGNNNCTG 1 cut(s) 572
CfoI GCGC 5 cut(s) 91, 118, 163, 296, 317
Cfr13I GGNCC 3 cut(s) 621, 668, 1007
Csp6I GTAC 3 cut(s) 139, 193, 990
CviAII CATG 6 cut(s) 35, 392, 549, 625, 833, 1108
CviQI GTAC 3 cut(s) 139, 193, 990
DdeI CTNAG 6 cut(s) 59, 300, 369, 768, 825, 1131
DpnI GATC 2 cut(s) 541, 921
DpnII GATC 2 cut(s) 539, 919
Eam1104I CTCTTC 2 cut(s) 468, 783
EarI CTCTTC 2 cut(s) 468, 783
Eco130I CCWWGG 2 cut(s) 837, 1107
Eco31I GGTCTC 1 cut(s) 857
Eco32I GATATC 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 668
Eco57I CTGAAG 2 cut(s) 402, 837
EcoO109I RGGNCCY 1 cut(s) 668
EcoRII CCWGG 3 cut(s) 481, 682, 1040
EcoRV GATATC 1 cut(s) 268
EcoT14I CCWWGG 2 cut(s) 837, 1107
ErhI CCWWGG 2 cut(s) 837, 1107
FaeI CATG 6 cut(s) 38, 395, 552, 628, 836, 1111
FalI AAGNNNNNCTT 2 cut(s) 709, 741
FaqI GGGAC 1 cut(s) 364
FatI CATG 6 cut(s) 34, 391, 548, 624, 832, 1107
FauI CCCGC 2 cut(s) 461, 612
Fnu4HI GCNGC 3 cut(s) 73, 76, 297
FokI GGATG 5 cut(s) 191, 673, 701, 982, 1079
Fsp4HI GCNGC 3 cut(s) 73, 76, 297
FspBI CTAG 1 cut(s) 647
GlaI GCGC 5 cut(s) 90, 117, 162, 295, 316
GluI GCNGC 3 cut(s) 73, 76, 297
GsaI CCCAGC 1 cut(s) 878
GsuI CTGGAG 2 cut(s) 504, 881
HaeII RGCGCY 1 cut(s) 318
HaeIII GGCC 2 cut(s) 623, 1009
HhaI GCGC 5 cut(s) 91, 118, 163, 296, 317
Hin1II CATG 6 cut(s) 38, 395, 552, 628, 836, 1111
Hin6I GCGC 5 cut(s) 89, 116, 161, 294, 315
HinP1I GCGC 5 cut(s) 89, 116, 161, 294, 315
HinfI GANTC 4 cut(s) 51, 448, 478, 928
Hpy166II GTNNAC 1 cut(s) 697
Hpy188I TCNGA 3 cut(s) 178, 322, 453
Hpy188III TCNNGA 5 cut(s) 518, 537, 677, 892, 1099
Hpy8I GTNNAC 1 cut(s) 697
HpyAV CCTTC 2 cut(s) 659, 1012
HpyCH4III ACNGT 4 cut(s) 174, 578, 792, 952
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 9 cut(s) 26, 230, 311, 341, 512, 552, 581, 745, 955
HpyF10VI GCNNNNNNNGC 3 cut(s) 625, 707, 884
HpyF3I CTNAG 6 cut(s) 59, 300, 369, 768, 825, 1131
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 6 cut(s) 38, 395, 552, 628, 836, 1111
HspAI GCGC 5 cut(s) 89, 116, 161, 294, 315
KpnI GGTACC 1 cut(s) 142
Kzo9I GATC 2 cut(s) 539, 919
LmnI GCTCC 2 cut(s) 560, 1123
Lsp1109I GCAGC 1 cut(s) 59
MaeI CTAG 1 cut(s) 647
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 2 cut(s) 200, 772
MalI GATC 2 cut(s) 541, 921
MbiI CCGCTC 1 cut(s) 619
MboI GATC 2 cut(s) 539, 919
MboII GAAGA 5 cut(s) 223, 296, 485, 770, 843
MfeI CAATTG 1 cut(s) 795
MluCI AATT 5 cut(s) 232, 631, 746, 795, 956
MlyI GAGTC 3 cut(s) 442, 472, 922
MmeI TCCRAC 2 cut(s) 156, 261
MseI TTAA 4 cut(s) 327, 432, 819, 960
MslI CAYNNNNRTG 1 cut(s) 225
MspCI CTTAAG 1 cut(s) 818
MspR9I CCNGG 3 cut(s) 483, 684, 1042
MunI CAATTG 1 cut(s) 795
MvaI CCWGG 3 cut(s) 483, 684, 1042
MvnI CGCG 3 cut(s) 91, 296, 701
MwoI GCNNNNNNNGC 3 cut(s) 625, 707, 884
NcoI CCATGG 1 cut(s) 1107
NdeII GATC 2 cut(s) 539, 919
NlaIII CATG 6 cut(s) 38, 395, 552, 628, 836, 1111
NlaIV GGNNCC 4 cut(s) 140, 422, 562, 670
NmeAIII GCCGAG 1 cut(s) 412
NspI RCATGY 2 cut(s) 395, 552
PaqCI CACCTGC 1 cut(s) 109
PasI CCCWGGG 1 cut(s) 683
PfeI GAWTC 1 cut(s) 51
PflFI GACNNNGTC 1 cut(s) 172
PfoI TCCNGGA 1 cut(s) 481
PkrI GCNGC 3 cut(s) 74, 77, 298
PleI GAGTC 3 cut(s) 442, 472, 922
PpsI GAGTC 3 cut(s) 442, 472, 922
PpuMI RGGWCCY 1 cut(s) 668
PshBI ATTAAT 1 cut(s) 327
Psp1406I AACGTT 1 cut(s) 204
Psp5II RGGWCCY 1 cut(s) 668
Psp6I CCWGG 3 cut(s) 481, 682, 1040
PspFI CCCAGC 1 cut(s) 874
PspGI CCWGG 3 cut(s) 481, 682, 1040
PspN4I GGNNCC 4 cut(s) 140, 422, 562, 670
PspPI GGNCC 3 cut(s) 621, 668, 1007
PspPPI RGGWCCY 1 cut(s) 668
PstNI CAGNNNCTG 1 cut(s) 572
PsyI GACNNNGTC 1 cut(s) 172
RsaI GTAC 3 cut(s) 140, 194, 991
RsaNI GTAC 3 cut(s) 139, 193, 990
RseI CAYNNNNRTG 1 cut(s) 225
SaqAI TTAA 4 cut(s) 327, 432, 819, 960
SatI GCNGC 3 cut(s) 73, 76, 297
Sau3AI GATC 2 cut(s) 539, 919
Sau96I GGNCC 3 cut(s) 621, 668, 1007
SchI GAGTC 3 cut(s) 442, 472, 922
ScrFI CCNGG 3 cut(s) 483, 684, 1042
SfcI CTRYAG 1 cut(s) 111
SinI GGWCC 1 cut(s) 668
SmiMI CAYNNNNRTG 1 cut(s) 225
SmlI CTYRAG 3 cut(s) 164, 818, 1097
SmoI CTYRAG 3 cut(s) 164, 818, 1097
Sse9I AATT 5 cut(s) 232, 631, 746, 795, 956
SsiI CCGC 4 cut(s) 75, 296, 468, 619
SspMI CTAG 1 cut(s) 647
StyD4I CCNGG 3 cut(s) 481, 682, 1040
StyI CCWWGG 2 cut(s) 837, 1107
TaaI ACNGT 4 cut(s) 174, 578, 792, 952
TaiI ACGT 1 cut(s) 207
TasI AATT 5 cut(s) 232, 631, 746, 795, 956
TatI WGTACW 1 cut(s) 192
TauI GCSGC 2 cut(s) 78, 299
TfiI GAWTC 1 cut(s) 51
Tru1I TTAA 4 cut(s) 327, 432, 819, 960
Tru9I TTAA 4 cut(s) 327, 432, 819, 960
TscAI CASTG 5 cut(s) 63, 177, 583, 861, 955
TseI GCWGC 1 cut(s) 72
TspDTI ATGAA 3 cut(s) 626, 1074, 1083
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 5 cut(s) 63, 177, 583, 861, 955
Tth111I GACNNNGTC 1 cut(s) 172
Vha464I CTTAAG 1 cut(s) 818
VpaK11BI GGWCC 1 cut(s) 668
VspI ATTAAT 1 cut(s) 327
XapI RAATTY 2 cut(s) 232, 631
XceI RCATGY 2 cut(s) 395, 552
XspI CTAG 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.