Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009894

Physical Location & Seq

Genomic Coordinates Forward (+)

4662559 .. 4664717

Gene Structure 2159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1068300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGACCGATGGGGGTGTGGAGAGTCGAAGAGAGCATGAACAACACAATAGAACACAGAGAAAATCGAGTGGTGATGACTTTGCACGAGCAATTGCGAAGATTGCAATAGCGCAAGTTTGTGAGATAGTGGGGTTTCAGACGTTCCAATTGTCTGCTCTCGAAAAACTCTCTGATGTTGCTGTTCAGTACATTCATAACATTGGAAAGACTGCGCATTTATATGCTAATTTAGCTGGTAGAACGGAATGCAATGTTTTCGATATGATTCAAGGGTTGGAAGATTTGGGCTTGGTGCAGGGATTTTTAGGTGCTTCAGATGTTGATCATTGTCTTACAAGTTCAGGGACGGTTAGGGAAATTGCTCAGTATGTTGCTGAAACTGAGCATATTCCATTTTCCTACACTATTCCTCAATTCCCAGTTGTTAAGGACCGAAATCTGAACCCTAGTTTTTGGCAAAGCAGCGTAGAGACACCTGGTGAGCATATACCTAGTTGGTTGCCTGCTTTTCCTGAACCACATACATATGCCCAGTCACCCATATTGAATGAGAGAGCTGTAGAACCTCAAACTGATATGGTTGAGCAAGAAAAACAACAGAGAAATGTGGAGCGGTCTCTGTTCAATTTGCAGCGGAGGCTGTTATGCAATGGGTCAGAGGGACCCTCTGTTGAGCCTGAAGATGCTGATAAGGCAAAACAAGCAAGAGAAAGTAACCCTTTTCTTGCTACACCTCTGCAATATGGGGAGATGGATGTATCTCATGTTGCTGTTCCAGCTAAAATTTCAAGTGAAGCCACAGTGGGAAATGTTGTTGCTGAGAACCATGTCCTGAATCAGTGTTCACTGCTGGAGACCTTTGCTCCAGCTATTGAAACAATGAAGAGCGGATCATGTGAATCAGAGGAGGGGCAGAAAGAGATTCTTGTGAGCAGAAGACCAATTGTGCAATTTAAGGTTGGAATTGCAAAGAAGTCCTTAAGTACTACGTTTCATTCGAGCCCATACAACAAGGGTTTTCAGAAAACCTATTCCTTGTTTGAAAGAGAATATGAGAAGGATGAAAAGAAAAGGAGGGCTGAGAAAATTCTGAAGGATTCCATGAAAAACCCAGAGGAGCTTGCTGAGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

Bromo_TP TAF8_C

Protein Analysis

378

Amino Acids

42.18

Weight (kDa)

5.42

Isoelectric Point (pI)

56.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromo_TP	PF07524	26 - 97	1.6e-21	Bromodomain associated
TAF8_C	PF10406	162 - 210	1.3e-14	Transcription factor TFIID complex subunit 8 C-term

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02160 AT3G02160 AT5G15570
fragaria_vesca	FvH4_6g46720 FvH4_6g46720
malus_domestica	MD09G1068300.v1.1 MD17G1061200.v1.1
prunus_persica	Prupe.3G252500_v2.0.a1
pyrus_communis	pycom12433g00130 pycom17g06110
rosa_chinensis	RchiOBHm_Chr2g0165611
rosa_laevigata	RLG00000021543
rosa_multiflora	Rmu_co8454451.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085690
rosa_rugosa	Rorug02G0516400
rosa_samantha	Rh2AG582700 Rh2BG594800 Rh2CG564600 Rh2DG604600
rosa_wichuraiana	Rw0G016050 Rw2G048600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1132
Acc16I	TGCGCA	1 cut(s)	213
AccBSI	CCGCTC	2 cut(s)	613, 888
AciI	CCGC	3 cut(s)	613, 634, 888
AclWI	GGATC	1 cut(s)	898
AcsI	RAATTY	2 cut(s)	783, 1086
AcuI	CTGAAG	3 cut(s)	297, 699, 1112
AdeI	CACNNNGTG	1 cut(s)	479
AfaI	GTAC	2 cut(s)	188, 985
AflII	CTTAAG	1 cut(s)	979
AgsI	TTSAA	6 cut(s)	269, 547, 625, 789, 875, 1043
AjnI	CCWGG	1 cut(s)	475
AluBI	AGCT	5 cut(s)	233, 557, 779, 869, 1120
AluI	AGCT	5 cut(s)	233, 557, 779, 869, 1120
Alw26I	GTCTC	3 cut(s)	464, 621, 848
AlwI	GGATC	1 cut(s)	898
ApeKI	GCWGC	2 cut(s)	462, 631
ApoI	RAATTY	2 cut(s)	783, 1086
AspLEI	GCGC	2 cut(s)	112, 214
AspS9I	GGNCC	2 cut(s)	430, 662
AsuHPI	GGTGA	3 cut(s)	83, 491, 528
AvaII	GGWCC	2 cut(s)	430, 662
BanII	GRGCYC	1 cut(s)	1004
BauI	CACGAG	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	943
BbvI	GCAGC	2 cut(s)	474, 643
BccI	CCATC	2 cut(s)	2, 745
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BciT130I	CCWGG	1 cut(s)	477
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	3 cut(s)	464, 621, 848
BfaI	CTAG	2 cut(s)	447, 492
BfmI	CTRYAG	1 cut(s)	558
BfrI	CTTAAG	1 cut(s)	979
BisI	GCNGC	2 cut(s)	463, 632
BlsI	GCNGC	2 cut(s)	464, 633
BmcAI	AGTACT	1 cut(s)	985
Bme1390I	CCNGG	1 cut(s)	477
Bme18I	GGWCC	2 cut(s)	430, 662
BmgT120I	GGNCC	2 cut(s)	430, 662
BmiI	GGNNCC	2 cut(s)	663, 664
BmrFI	CCNGG	1 cut(s)	477
BmrI	ACTGGG	2 cut(s)	413, 526
BmsI	GCATC	1 cut(s)	673
BmuI	ACTGGG	2 cut(s)	413, 526
BpiI	GAAGAC	1 cut(s)	943
BplI	GAGNNNNNCTC	2 cut(s)	650, 682
BpmI	CTGGAG	2 cut(s)	849, 872
BsaBI	GATNNNNATC	1 cut(s)	321
BsaI	GGTCTC	2 cut(s)	621, 848
BsaXI	ACNNNNNCTCC	2 cut(s)	847, 877
Bse1I	ACTGG	2 cut(s)	419, 532
Bse3DI	GCAATG	2 cut(s)	256, 655
Bse8I	GATNNNNATC	1 cut(s)	321
BseBI	CCWGG	1 cut(s)	477
BseGI	GGATG	2 cut(s)	760, 1066
BseJI	GATNNNNATC	1 cut(s)	321
BseMI	GCAATG	2 cut(s)	256, 655
BseMII	CTCAG	5 cut(s)	372, 377, 810, 1071, 1116
BseNI	ACTGG	2 cut(s)	419, 532
BseRI	GAGGAG	2 cut(s)	920, 1130
BseXI	GCAGC	2 cut(s)	474, 643
BsgI	GTGCAG	1 cut(s)	314
BslFI	GGGAC	2 cut(s)	358, 675
BsmAI	GTCTC	3 cut(s)	464, 621, 848
BsmFI	GGGAC	2 cut(s)	358, 675
BsmI	GAATGC	1 cut(s)	251
Bso31I	GGTCTC	2 cut(s)	621, 848
Bsp1286I	GDGCHC	1 cut(s)	1004
Bsp143I	GATC	2 cut(s)	322, 890
BspACI	CCGC	3 cut(s)	613, 634, 888
BspCNI	CTCAG	5 cut(s)	373, 376, 811, 1072, 1117
BspLI	GGNNCC	2 cut(s)	663, 664
BspPI	GGATC	1 cut(s)	898
BspQI	GCTCTTC	1 cut(s)	878
BspTI	CTTAAG	1 cut(s)	979
BspTNI	GGTCTC	2 cut(s)	621, 848
BsrBI	CCGCTC	2 cut(s)	613, 888
BsrDI	GCAATG	2 cut(s)	256, 655
BsrI	ACTGG	2 cut(s)	419, 532
BssMI	GATC	2 cut(s)	322, 890
BssSI	CACGAG	1 cut(s)	84
Bst2BI	CACGAG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	2 cut(s)	349, 802
Bst6I	CTCTTC	2 cut(s)	22, 878
BstAFI	CTTAAG	1 cut(s)	979
BstC8I	GCNNGC	2 cut(s)	504, 1122
BstDEI	CTNAG	5 cut(s)	363, 381, 819, 1080, 1125
BstF5I	GGATG	2 cut(s)	760, 1066
BstHHI	GCGC	2 cut(s)	112, 214
BstKTI	GATC	2 cut(s)	325, 893
BstMAI	GTCTC	3 cut(s)	464, 621, 848
BstMBI	GATC	2 cut(s)	322, 890
BstMWI	GCNNNNNNNGC	6 cut(s)	101, 230, 637, 692, 701, 776
BstNI	CCWGG	1 cut(s)	477
BstSCI	CCNGG	1 cut(s)	475
BstSFI	CTRYAG	1 cut(s)	558
BstV1I	GCAGC	2 cut(s)	474, 643
BstV2I	GAAGAC	1 cut(s)	943
BtsCI	GGATG	2 cut(s)	760, 1066
BtsI	GCAGTG	1 cut(s)	845
BtsIMutI	CAGTG	3 cut(s)	807, 845, 845
Cac8I	GCNNGC	2 cut(s)	504, 1122
CfoI	GCGC	2 cut(s)	112, 214
Cfr13I	GGNCC	2 cut(s)	430, 662
CsiI	ACCWGGT	1 cut(s)	475
Csp6I	GTAC	2 cut(s)	187, 984
CviAII	CATG	5 cut(s)	35, 764, 827, 894, 1102
CviQI	GTAC	2 cut(s)	187, 984
DdeI	CTNAG	5 cut(s)	363, 381, 819, 1080, 1125
DpnI	GATC	2 cut(s)	324, 892
DpnII	GATC	2 cut(s)	322, 890
DraIII	CACNNNGTG	1 cut(s)	479
Eam1104I	CTCTTC	2 cut(s)	22, 878
EarI	CTCTTC	2 cut(s)	22, 878
Eco24I	GRGCYC	1 cut(s)	1004
Eco31I	GGTCTC	2 cut(s)	621, 848
Eco47I	GGWCC	2 cut(s)	430, 662
Eco57I	CTGAAG	3 cut(s)	297, 699, 1112
EcoO109I	RGGNCCY	1 cut(s)	662
EcoRII	CCWGG	1 cut(s)	475
EcoT38I	GRGCYC	1 cut(s)	1004
FaeI	CATG	5 cut(s)	38, 767, 830, 897, 1105
FalI	AAGNNNNNCTT	6 cut(s)	703, 735, 909, 941, 962, 994
FaqI	GGGAC	2 cut(s)	358, 675
FatI	CATG	5 cut(s)	34, 763, 826, 893, 1101
FauNDI	CATATG	1 cut(s)	526
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	2 cut(s)	463, 632
FokI	GGATG	2 cut(s)	767, 1073
FriOI	GRGCYC	1 cut(s)	1004
Fsp4HI	GCNGC	2 cut(s)	463, 632
FspBI	CTAG	2 cut(s)	447, 492
FspI	TGCGCA	1 cut(s)	213
GlaI	GCGC	2 cut(s)	111, 213
GluI	GCNGC	2 cut(s)	463, 632
GsuI	CTGGAG	2 cut(s)	849, 872
HhaI	GCGC	2 cut(s)	112, 214
Hin1II	CATG	5 cut(s)	38, 767, 830, 897, 1105
Hin6I	GCGC	2 cut(s)	110, 212
HinP1I	GCGC	2 cut(s)	110, 212
HinfI	GANTC	6 cut(s)	22, 265, 835, 899, 922, 1097
HphI	GGTGA	3 cut(s)	83, 491, 528
Hpy166II	GTNNAC	1 cut(s)	845
Hpy188I	TCNGA	8 cut(s)	138, 172, 316, 441, 658, 904, 1023, 1092
Hpy188III	TCNNGA	3 cut(s)	158, 512, 832
Hpy8I	GTNNAC	1 cut(s)	845
HpyAV	CCTTC	2 cut(s)	1051, 1087
HpyCH4III	ACNGT	2 cut(s)	349, 802
HpyCH4IV	ACGT	2 cut(s)	140, 989
HpyCH4V	TGCA	9 cut(s)	83, 104, 249, 295, 631, 648, 739, 949, 968
HpyF10VI	GCNNNNNNNGC	6 cut(s)	101, 230, 637, 692, 701, 776
HpyF3I	CTNAG	5 cut(s)	363, 381, 819, 1080, 1125
HpySE526I	ACGT	2 cut(s)	140, 989
Hsp92II	CATG	5 cut(s)	38, 767, 830, 897, 1105
HspAI	GCGC	2 cut(s)	110, 212
KflI	GGGWCCC	1 cut(s)	662
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	2 cut(s)	322, 890
LguI	GCTCTTC	1 cut(s)	878
LmnI	GCTCC	3 cut(s)	610, 868, 1117
Lsp1109I	GCAGC	2 cut(s)	474, 643
LweI	GCATC	1 cut(s)	673
MabI	ACCWGGT	1 cut(s)	475
MaeI	CTAG	2 cut(s)	447, 492
MaeII	ACGT	2 cut(s)	140, 989
MaeIII	GTNAC	2 cut(s)	534, 713
MalI	GATC	2 cut(s)	324, 892
MbiI	CCGCTC	2 cut(s)	613, 888
MboI	GATC	2 cut(s)	322, 890
MboII	GAAGA	6 cut(s)	39, 109, 290, 692, 895, 948
MfeI	CAATTG	3 cut(s)	90, 146, 942
MhlI	GDGCHC	1 cut(s)	1004
MlyI	GAGTC	1 cut(s)	31
MmeI	TCCRAC	2 cut(s)	255, 940
MseI	TTAA	3 cut(s)	426, 954, 980
MslI	CAYNNNNRTG	2 cut(s)	219, 525
MspA1I	CMGCKG	1 cut(s)	634
MspCI	CTTAAG	1 cut(s)	979
MspR9I	CCNGG	1 cut(s)	477
MunI	CAATTG	3 cut(s)	90, 146, 942
Mva1269I	GAATGC	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	6 cut(s)	101, 230, 637, 692, 701, 776
NdeI	CATATG	1 cut(s)	526
NdeII	GATC	2 cut(s)	322, 890
NlaIII	CATG	5 cut(s)	38, 767, 830, 897, 1105
NlaIV	GGNNCC	2 cut(s)	663, 664
NmuCI	GTSAC	1 cut(s)	534
NsbI	TGCGCA	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	878
PcsI	WCGNNNNNNNCGW	1 cut(s)	995
PctI	GAATGC	1 cut(s)	251
PfeI	GAWTC	5 cut(s)	265, 835, 899, 922, 1097
PkrI	GCNGC	2 cut(s)	464, 633
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
PpuMI	RGGWCCY	1 cut(s)	662
PsiI	TTATAA	1 cut(s)	1132
Psp5II	RGGWCCY	1 cut(s)	662
Psp6I	CCWGG	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	2 cut(s)	663, 664
PspPI	GGNCC	2 cut(s)	430, 662
PspPPI	RGGWCCY	1 cut(s)	662
RsaI	GTAC	2 cut(s)	188, 985
RsaNI	GTAC	2 cut(s)	187, 984
RseI	CAYNNNNRTG	2 cut(s)	219, 525
SapI	GCTCTTC	1 cut(s)	878
SaqAI	TTAA	3 cut(s)	426, 954, 980
SatI	GCNGC	2 cut(s)	463, 632
Sau3AI	GATC	2 cut(s)	322, 890
Sau96I	GGNCC	2 cut(s)	430, 662
ScaI	AGTACT	1 cut(s)	985
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	1 cut(s)	477
SduI	GDGCHC	1 cut(s)	1004
SexAI	ACCWGGT	1 cut(s)	475
SfaNI	GCATC	1 cut(s)	673
SfcI	CTRYAG	1 cut(s)	558
SinI	GGWCC	2 cut(s)	430, 662
SmiMI	CAYNNNNRTG	2 cut(s)	219, 525
SmlI	CTYRAG	1 cut(s)	979
SmoI	CTYRAG	1 cut(s)	979
SsiI	CCGC	3 cut(s)	613, 634, 888
SspMI	CTAG	2 cut(s)	447, 492
StyD4I	CCNGG	1 cut(s)	475
TaaI	ACNGT	2 cut(s)	349, 802
TaiI	ACGT	2 cut(s)	143, 992
TaqI	TCGA	5 cut(s)	25, 65, 159, 258, 998
TaqII	GACCGA	2 cut(s)	20, 447
TatI	WGTACW	2 cut(s)	186, 983
TfiI	GAWTC	5 cut(s)	265, 835, 899, 922, 1097
Tru1I	TTAA	3 cut(s)	426, 954, 980
Tru9I	TTAA	3 cut(s)	426, 954, 980
TscAI	CASTG	3 cut(s)	807, 845, 852
TseFI	GTSAC	1 cut(s)	534
TseI	GCWGC	2 cut(s)	462, 631
Tsp45I	GTSAC	1 cut(s)	534
TspDTI	ATGAA	6 cut(s)	51, 182, 896, 983, 1077, 1118
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	3 cut(s)	807, 845, 852
Vha464I	CTTAAG	1 cut(s)	979
VpaK11BI	GGWCC	2 cut(s)	430, 662
XapI	RAATTY	2 cut(s)	783, 1086
XspI	CTAG	2 cut(s)	447, 492
ZrmI	AGTACT	1 cut(s)	985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.