Rorug02G0516400
TCP Family

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004546
Physical Location & Seq
Reverse (-)
64770669 .. 64776622
5954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0516400.1

Sequence Viewer

Length: 924 bp
ATGGCATGGCTACCTTTGATGGTGCAGAAGCCGGTTTATTTTCTGGGGAGGCAATGGAACGGTGTCGACATAGTTAATGTTTTCACCCTTGTTGCTATACATCTTCTTGCTCTTCTGGCGCCATTTCATTTCACATGGTCTGCGTTTTGGTTGGGCGTAGCACTCTACTATGTCACTGGTGTGGGGGTAACTATATCTTTTCATAGAAATCTCGCCCACAGAAGCTTCAAGCTTCCCAAATGGCTCGAATACTTCTTCGCCTATTGCGCCGTTCATTCGCTTCAGGGAAGTCCACTAGAATGGGTTAGCTCACACAGGAGTCACCACCAGTTTGTGGACACGCCGAATGACCCTCATACCCCTCTTAAAGGTTTATGGTTTAGTCACATTGGTTGGATCCTTGATTATCGTAAACGTTTTGGAAGTTATGATGGAAAACTATACAATGTTGGAGATTTGAAAAAACAGACATATTATAAGTTTCTTCACTACACGTACCCTTATCATTGTATTGCTTGTGGAGTTGTACTCTATCGCATAGGAGGAATGCCCTATTTAGTTTGGGCACTGGCTGTGAGAATGATATTTTTTCTCCATGTAACTTTTTCATTAAATTCGGTTTGCCACATATGGGGAAACCAAGTATGGGATACTGGTGATTTGTCCAAAAACAACTGGTTATGTGGATTGCTAGCTCATGGAGAAGGTTGGCACAATAACCACCATGCTTTTGATTACTCAGCTCGACACGGTTTTGAATGGTGGCAAATTGATATTACTTGGTATCTGATAAGGTTTCTTGAGATTGTTGGTTTGGCAACGGATGTTAAGCTCCCGACTGAGCTTCAGAAGAACCGAAAAGCTTTGTCAAACAAAATCAGTAGCATGGAGGAGGAGGGAAGGTTTGAAACAAAAGTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromo_TP TAF8_C

Protein Analysis

307

Amino Acids

35.95

Weight (kDa)

9.05

Isoelectric Point (pI)

30.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_desaturase PF00487 45 - 260 1.2e-16 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 477
AccB1I GGYRCC 1 cut(s) 118
AccB7I CCANNNNNTGG 1 cut(s) 334
AccI GTMKAC 1 cut(s) 66
AclI AACGTT 1 cut(s) 415
AclWI GGATC 2 cut(s) 391, 404
AcsI RAATTY 1 cut(s) 613
AcuI CTGAAG 2 cut(s) 266, 830
AcyI GRCGYC 1 cut(s) 119
AfaI GTAC 2 cut(s) 497, 528
AfiI CCNNNNNNNGG 4 cut(s) 334, 368, 631, 646
AflIII ACRYGT 1 cut(s) 492
AgsI TTSAA 4 cut(s) 229, 460, 758, 908
AleI CACNNNNGTG 1 cut(s) 179
AluBI AGCT 8 cut(s) 225, 232, 309, 695, 743, 832, 844, 863
AluI AGCT 8 cut(s) 225, 232, 309, 695, 743, 832, 844, 863
AlwI GGATC 2 cut(s) 391, 404
ApoI RAATTY 1 cut(s) 613
AspLEI GCGC 2 cut(s) 121, 269
AsuHPI GGTGA 3 cut(s) 76, 314, 668
AsuNHI GCTAGC 1 cut(s) 691
BaeGI GKGCMC 1 cut(s) 568
BamHI GGATCC 1 cut(s) 396
BanI GGYRCC 1 cut(s) 118
BccI CCATC 2 cut(s) 13, 425
BceAI ACGGC 1 cut(s) 254
BciVI GTATCC 1 cut(s) 643
BfaI CTAG 2 cut(s) 296, 692
BfoI RGCGCY 1 cut(s) 122
BfuI GTATCC 1 cut(s) 643
BmiI GGNNCC 2 cut(s) 120, 398
BmtI GCTAGC 1 cut(s) 695
BplI GAGNNNNNCTC 2 cut(s) 513, 545
BpuEI CTTGAG 1 cut(s) 821
BsaAI YACGTR 1 cut(s) 495
BsaHI GRCGYC 1 cut(s) 119
BsaXI ACNNNNNCTCC 2 cut(s) 887, 917
Bsc4I CCNNNNNNNGG 4 cut(s) 334, 368, 631, 646
Bse118I RCCGGY 1 cut(s) 31
Bse1I ACTGG 5 cut(s) 181, 328, 573, 658, 680
Bse3DI GCAATG 1 cut(s) 59
BseGI GGATG 1 cut(s) 829
BseLI CCNNNNNNNGG 4 cut(s) 334, 368, 631, 646
BseMI GCAATG 1 cut(s) 59
BseMII CTCAG 2 cut(s) 753, 831
BseNI ACTGG 5 cut(s) 181, 328, 573, 658, 680
BseRI GAGGAG 2 cut(s) 905, 908
BseSI GKGCMC 1 cut(s) 568
BsgI GTGCAG 1 cut(s) 44
BshNI GGYRCC 1 cut(s) 118
BsiSI CCGG 1 cut(s) 32
BslI CCNNNNNNNGG 4 cut(s) 334, 368, 631, 646
BsmI GAATGC 1 cut(s) 552
Bsp1286I GDGCHC 1 cut(s) 568
Bsp143I GATC 1 cut(s) 396
BspCNI CTCAG 2 cut(s) 752, 832
BspLI GGNNCC 2 cut(s) 120, 398
BspOI GCTAGC 1 cut(s) 695
BspPI GGATC 2 cut(s) 391, 404
BspQI GCTCTTC 1 cut(s) 117
BspT107I GGYRCC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 59
BsrFI RCCGGY 1 cut(s) 31
BsrI ACTGG 5 cut(s) 181, 328, 573, 658, 680
BssAI RCCGGY 1 cut(s) 31
BssMI GATC 1 cut(s) 396
BssNI GRCGYC 1 cut(s) 119
Bst4CI ACNGT 2 cut(s) 62, 752
Bst6I CTCTTC 1 cut(s) 117
BstACI GRCGYC 1 cut(s) 119
BstBAI YACGTR 1 cut(s) 495
BstC8I GCNNGC 1 cut(s) 693
BstDEI CTNAG 2 cut(s) 739, 840
BstENI CCTNNNNNAGG 1 cut(s) 366
BstF5I GGATG 1 cut(s) 829
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 2 cut(s) 121, 269
BstKTI GATC 1 cut(s) 399
BstMBI GATC 1 cut(s) 396
BstMWI GCNNNNNNNGC 2 cut(s) 116, 266
BstSLI GKGCMC 1 cut(s) 568
BstX2I RGATCY 1 cut(s) 396
BstXI CCANNNNNNTGG 1 cut(s) 300
BstYI RGATCY 1 cut(s) 396
BsuI GTATCC 1 cut(s) 643
BtsCI GGATG 1 cut(s) 829
BtsIMutI CAGTG 2 cut(s) 174, 566
Cac8I GCNNGC 1 cut(s) 693
CfoI GCGC 2 cut(s) 121, 269
Cfr10I RCCGGY 1 cut(s) 31
Csp6I GTAC 2 cut(s) 496, 527
CviAII CATG 6 cut(s) 6, 135, 596, 698, 725, 886
CviQI GTAC 2 cut(s) 496, 527
DdeI CTNAG 2 cut(s) 739, 840
DinI GGCGCC 1 cut(s) 120
DpnI GATC 1 cut(s) 398
DpnII GATC 1 cut(s) 396
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco57I CTGAAG 2 cut(s) 266, 830
EcoNI CCTNNNNNAGG 1 cut(s) 366
EgeI GGCGCC 1 cut(s) 120
EheI GGCGCC 1 cut(s) 120
FaeI CATG 6 cut(s) 9, 138, 599, 701, 728, 889
FatI CATG 6 cut(s) 5, 134, 595, 697, 724, 885
FauNDI CATATG 1 cut(s) 629
FblI GTMKAC 1 cut(s) 66
FokI GGATG 1 cut(s) 836
FspBI CTAG 2 cut(s) 296, 692
GlaI GCGC 2 cut(s) 120, 268
HaeII RGCGCY 1 cut(s) 122
HapII CCGG 1 cut(s) 32
HhaI GCGC 2 cut(s) 121, 269
Hin1I GRCGYC 1 cut(s) 119
Hin1II CATG 6 cut(s) 9, 138, 599, 701, 728, 889
Hin6I GCGC 2 cut(s) 119, 267
HinP1I GCGC 2 cut(s) 119, 267
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HindIII AAGCTT 3 cut(s) 223, 230, 861
HinfI GANTC 1 cut(s) 319
HpaII CCGG 1 cut(s) 32
HphI GGTGA 3 cut(s) 76, 314, 668
Hpy166II GTNNAC 4 cut(s) 67, 293, 337, 413
Hpy188I TCNGA 2 cut(s) 789, 849
Hpy188III TCNNGA 2 cut(s) 800, 835
Hpy8I GTNNAC 4 cut(s) 67, 293, 337, 413
HpyAV CCTTC 2 cut(s) 698, 894
HpyCH4III ACNGT 2 cut(s) 62, 752
HpyCH4IV ACGT 2 cut(s) 415, 494
HpyCH4V TGCA 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 266
HpyF3I CTNAG 2 cut(s) 739, 840
HpySE526I ACGT 2 cut(s) 415, 494
Hsp92I GRCGYC 1 cut(s) 119
Hsp92II CATG 6 cut(s) 9, 138, 599, 701, 728, 889
HspAI GCGC 2 cut(s) 119, 267
KasI GGCGCC 1 cut(s) 118
Kzo9I GATC 1 cut(s) 396
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 1 cut(s) 837
MaeI CTAG 2 cut(s) 296, 692
MaeII ACGT 2 cut(s) 415, 494
MaeIII GTNAC 5 cut(s) 172, 187, 320, 383, 598
MalI GATC 1 cut(s) 398
MboI GATC 1 cut(s) 396
MboII GAAGA 5 cut(s) 95, 104, 247, 476, 862
MflI RGATCY 1 cut(s) 396
MhlI GDGCHC 1 cut(s) 568
MluCI AATT 2 cut(s) 613, 768
Mly113I GGCGCC 1 cut(s) 119
MlyI GAGTC 1 cut(s) 328
MmeI TCCRAC 2 cut(s) 374, 430
MnlI CCTC 7 cut(s) 42, 363, 372, 536, 883, 886, 889
MseI TTAA 4 cut(s) 75, 366, 611, 828
MslI CAYNNNNRTG 2 cut(s) 179, 298
MspI CCGG 1 cut(s) 32
Mva1269I GAATGC 1 cut(s) 552
MwoI GCNNNNNNNGC 2 cut(s) 116, 266
NarI GGCGCC 1 cut(s) 119
NdeI CATATG 1 cut(s) 629
NdeII GATC 1 cut(s) 396
NheI GCTAGC 1 cut(s) 691
NlaIII CATG 6 cut(s) 9, 138, 599, 701, 728, 889
NlaIV GGNNCC 2 cut(s) 120, 398
NmuCI GTSAC 3 cut(s) 172, 320, 383
OliI CACNNNNGTG 1 cut(s) 179
PciSI GCTCTTC 1 cut(s) 117
PctI GAATGC 1 cut(s) 552
PflMI CCANNNNNTGG 1 cut(s) 334
PleI GAGTC 1 cut(s) 327
PluTI GGCGCC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 327
Ppu21I YACGTR 1 cut(s) 495
PsiI TTATAA 1 cut(s) 477
Psp1406I AACGTT 1 cut(s) 415
PspN4I GGNNCC 2 cut(s) 120, 398
PsuI RGATCY 1 cut(s) 396
RsaI GTAC 2 cut(s) 497, 528
RsaNI GTAC 2 cut(s) 496, 527
RseI CAYNNNNRTG 2 cut(s) 179, 298
SalI GTCGAC 1 cut(s) 65
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 4 cut(s) 75, 366, 611, 828
Sau3AI GATC 1 cut(s) 396
SchI GAGTC 1 cut(s) 328
SduI GDGCHC 1 cut(s) 568
SfoI GGCGCC 1 cut(s) 120
SmiMI CAYNNNNRTG 2 cut(s) 179, 298
SmlI CTYRAG 1 cut(s) 800
SmoI CTYRAG 1 cut(s) 800
Sse9I AATT 2 cut(s) 613, 768
SspDI GGCGCC 1 cut(s) 118
SspMI CTAG 2 cut(s) 296, 692
TaaI ACNGT 2 cut(s) 62, 752
TaiI ACGT 2 cut(s) 418, 497
TaqI TCGA 3 cut(s) 66, 246, 745
TasI AATT 2 cut(s) 613, 768
TatI WGTACW 1 cut(s) 526
Tru1I TTAA 4 cut(s) 75, 366, 611, 828
Tru9I TTAA 4 cut(s) 75, 366, 611, 828
TscAI CASTG 2 cut(s) 181, 573
TseFI GTSAC 3 cut(s) 172, 320, 383
Tsp45I GTSAC 3 cut(s) 172, 320, 383
TspDTI ATGAA 4 cut(s) 116, 191, 263, 597
TspGWI ACGGA 1 cut(s) 836
TspRI CASTG 2 cut(s) 181, 573
Van91I CCANNNNNTGG 1 cut(s) 334
XagI CCTNNNNNAGG 1 cut(s) 366
XapI RAATTY 1 cut(s) 613
XmiI GTMKAC 1 cut(s) 66
XspI CTAG 2 cut(s) 296, 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.