Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8268985.1

Orthogroup ID

OG0004546

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 824

Gene Structure 824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8268985.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 632 bp

cttctcatcatctcttgaatacaacaaagcagctcagcaagaacaatccttgtctggccaaacaatttacaatgacagacacactcgggacctgtccatgaacaaaccgaatatttcaaagcccttaagccagcaatcatttgactcaacctacagagaagcccgtggtatttcagtcagacctggaggaaaagatggagtaggtcatagattgaaatacatagactccccaaggccttcacaaccactaaaacccatcaagccaagggtttctggtggcgagtcatttcaagttcatgccaagcttcgggaagcacatcgaaattccaacgaggagaaggatggttgcatgcgatttgcgccaaaagaagcaaggaggctgtcttatgatgaaaggggatcacgagatacagtgaaatccacaacaaaactcaaagaactcccaaggctttctttggacagcaaagaacgttccattaggagggcttgtagccctgaaacaagatcaagccatttcttcaaggatctgcagagggagaatgggaactgtgacaaaatgcttgacctgcagccagaacccggaagttctaaaagaccgaatgttgttgcaaagttgatgggcttggatctct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008017 GO:0008092 GO:0008150 GO:0015631 GO:0022603 GO:0022604 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051510 GO:0051513 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 VARLMGL

Protein Analysis

210

Amino Acids

23.8

Weight (kDa)

9.83

Isoelectric Point (pI)

59.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46710 FvH4_6g46710 FvH4_6g46710 FvH4_6g46710
malus_domestica	MD09G1068400.v1.1 MD17G1061300.v1.1
prunus_persica	Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1
pyrus_communis	pycom12433g00110 pycom12433g00120 pycom17g06120
rosa_chinensis	RchiOBHm_Chr2g0165601
rosa_laevigata	RLG00000021542
rosa_multiflora	Rmu_co8268985.1_g000001 Rmu_co8395029.1_g000001 Rmu_sc0005425.1_g000021 Rmu_sc0035818.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085700
rosa_rugosa	Rorug02G0516300 Rorug02G0516400 Rorug02G0516400 Rorug02G0516400
rosa_samantha	Rh2AG582500 Rh2BG594600 Rh2CG564500 Rh2DG604500
rosa_wichuraiana	Rw0G016060 Rw2G048590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	574
AclI	AACGTT	1 cut(s)	470
AclWI	GGATC	2 cut(s)	407, 532
AcoI	YGGCCR	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	323
AfiI	CCNNNNNNNGG	3 cut(s)	307, 481, 579
AflII	CTTAAG	1 cut(s)	125
AgsI	TTSAA	5 cut(s)	18, 118, 215, 291, 521
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	2 cut(s)	33, 305
AluI	AGCT	2 cut(s)	33, 305
AlwI	GGATC	2 cut(s)	407, 532
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	2 cut(s)	56, 234
ApeKI	GCWGC	2 cut(s)	30, 569
ApoI	RAATTY	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	362
AspS9I	GGNCC	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	580
AvaI	CYCGRG	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	89
BalI	TGGCCA	1 cut(s)	58
BauI	CACGAG	1 cut(s)	403
BbvI	GCAGC	2 cut(s)	42, 581
BccI	CCATC	4 cut(s)	189, 264, 336, 611
BciT130I	CCWGG	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	580
BfmI	CTRYAG	3 cut(s)	152, 528, 567
BfrI	CTTAAG	1 cut(s)	125
BfuAI	ACCTGC	1 cut(s)	574
BisI	GCNGC	2 cut(s)	31, 570
BlpI	GCTNAGC	1 cut(s)	34
BlsI	GCNGC	2 cut(s)	32, 571
Bme1390I	CCNGG	2 cut(s)	184, 580
Bme18I	GGWCC	1 cut(s)	89
BmeT110I	CYCGRG	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	2 cut(s)	184, 580
BpmI	CTGGAG	1 cut(s)	205
Bpu1102I	GCTNAGC	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	580
BsaJI	CCNNGG	4 cut(s)	164, 231, 264, 444
BsaXI	ACNNNNNCTCC	4 cut(s)	210, 240, 473, 503
Bsc4I	CCNNNNNNNGG	3 cut(s)	307, 481, 579
BseBI	CCWGG	1 cut(s)	184
BseDI	CCNNGG	4 cut(s)	164, 231, 264, 444
BseGI	GGATG	1 cut(s)	347
BseLI	CCNNNNNNNGG	3 cut(s)	307, 481, 579
BseMII	CTCAG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	348
BseXI	GCAGC	2 cut(s)	42, 581
BshFI	GGCC	2 cut(s)	58, 236
BsiHKCI	CYCGRG	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	580
BslFI	GGGAC	1 cut(s)	102
BslI	CCNNNNNNNGG	3 cut(s)	307, 481, 579
BsmFI	GGGAC	1 cut(s)	102
BsnI	GGCC	2 cut(s)	58, 236
BsoBI	CYCGRG	1 cut(s)	85
Bsp143I	GATC	4 cut(s)	399, 504, 524, 626
Bsp1720I	GCTNAGC	1 cut(s)	34
BspANI	GGCC	2 cut(s)	58, 236
BspCNI	CTCAG	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	90
BspMAI	CTGCAG	2 cut(s)	532, 571
BspMI	ACCTGC	1 cut(s)	574
BspPI	GGATC	2 cut(s)	407, 532
BspTI	CTTAAG	1 cut(s)	125
BssECI	CCNNGG	4 cut(s)	164, 231, 264, 444
BssMI	GATC	4 cut(s)	399, 504, 524, 626
BssSI	CACGAG	1 cut(s)	403
BssT1I	CCWWGG	3 cut(s)	231, 264, 444
Bst2BI	CACGAG	1 cut(s)	403
Bst2UI	CCWGG	1 cut(s)	184
Bst4CI	ACNGT	2 cut(s)	413, 549
BstAFI	CTTAAG	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	132, 351
BstDEI	CTNAG	1 cut(s)	34
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	347
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	4 cut(s)	402, 507, 527, 629
BstMBI	GATC	4 cut(s)	399, 504, 524, 626
BstMWI	GCNNNNNNNGC	2 cut(s)	359, 566
BstNI	CCWGG	1 cut(s)	184
BstNSI	RCATGY	1 cut(s)	353
BstSCI	CCNGG	2 cut(s)	182, 578
BstSFI	CTRYAG	3 cut(s)	152, 528, 567
BstV1I	GCAGC	2 cut(s)	42, 581
BstX2I	RGATCY	2 cut(s)	524, 626
BstYI	RGATCY	2 cut(s)	524, 626
BsuRI	GGCC	2 cut(s)	58, 236
BtgI	CCRYGG	1 cut(s)	164
BtsCI	GGATG	1 cut(s)	347
BtsIMutI	CAGTG	1 cut(s)	418
BveI	ACCTGC	1 cut(s)	574
Cac8I	GCNNGC	2 cut(s)	132, 351
CfoI	GCGC	1 cut(s)	362
Cfr13I	GGNCC	1 cut(s)	89
CviAII	CATG	3 cut(s)	98, 297, 350
DdeI	CTNAG	1 cut(s)	34
DpnI	GATC	4 cut(s)	401, 506, 526, 628
DpnII	GATC	4 cut(s)	399, 504, 524, 626
EaeI	YGGCCR	1 cut(s)	56
Eco130I	CCWWGG	3 cut(s)	231, 264, 444
Eco147I	AGGCCT	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	89
Eco88I	CYCGRG	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	182
EcoT14I	CCWWGG	3 cut(s)	231, 264, 444
ErhI	CCWWGG	3 cut(s)	231, 264, 444
FaeI	CATG	3 cut(s)	101, 300, 353
FaiI	YATR	6 cut(s)	99, 208, 222, 298, 351, 388
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	3 cut(s)	97, 296, 349
Fnu4HI	GCNGC	2 cut(s)	31, 570
FokI	GGATG	1 cut(s)	354
Fsp4HI	GCNGC	2 cut(s)	31, 570
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	2 cut(s)	31, 570
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	2 cut(s)	58, 236
HapII	CCGG	1 cut(s)	580
HhaI	GCGC	1 cut(s)	362
Hin1II	CATG	3 cut(s)	101, 300, 353
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HindIII	AAGCTT	1 cut(s)	303
HinfI	GANTC	3 cut(s)	144, 225, 282
HpaII	CCGG	1 cut(s)	580
Hpy188I	TCNGA	1 cut(s)	180
Hpy188III	TCNNGA	4 cut(s)	15, 87, 309, 403
HpyAV	CCTTC	2 cut(s)	247, 332
HpyCH4III	ACNGT	2 cut(s)	413, 549
HpyCH4IV	ACGT	1 cut(s)	470
HpyCH4V	TGCA	4 cut(s)	349, 530, 569, 609
HpyF10VI	GCNNNNNNNGC	2 cut(s)	359, 566
HpyF3I	CTNAG	1 cut(s)	34
HpySE526I	ACGT	1 cut(s)	470
Hsp92II	CATG	3 cut(s)	101, 300, 353
HspAI	GCGC	1 cut(s)	360
Kzo9I	GATC	4 cut(s)	399, 504, 524, 626
Lsp1109I	GCAGC	2 cut(s)	42, 581
MaeII	ACGT	1 cut(s)	470
MaeIII	GTNAC	1 cut(s)	549
MalI	GATC	4 cut(s)	401, 506, 526, 628
MboI	GATC	4 cut(s)	399, 504, 524, 626
MboII	GAAGA	1 cut(s)	509
MflI	RGATCY	2 cut(s)	524, 626
MlsI	TGGCCA	1 cut(s)	58
MluCI	AATT	2 cut(s)	64, 323
MluNI	TGGCCA	1 cut(s)	58
MlyI	GAGTC	3 cut(s)	138, 219, 291
MmeI	TCCRAC	1 cut(s)	352
MnlI	CCTC	5 cut(s)	180, 326, 370, 475, 526
Mox20I	TGGCCA	1 cut(s)	58
MscI	TGGCCA	1 cut(s)	58
MseI	TTAA	1 cut(s)	126
Msp20I	TGGCCA	1 cut(s)	58
MspCI	CTTAAG	1 cut(s)	125
MspI	CCGG	1 cut(s)	580
MspR9I	CCNGG	2 cut(s)	184, 580
MvaI	CCWGG	1 cut(s)	184
MwoI	GCNNNNNNNGC	2 cut(s)	359, 566
NciI	CCSGG	1 cut(s)	580
NdeII	GATC	4 cut(s)	399, 504, 524, 626
NlaIII	CATG	3 cut(s)	101, 300, 353
NlaIV	GGNNCC	1 cut(s)	90
NmuCI	GTSAC	1 cut(s)	549
NspI	RCATGY	1 cut(s)	353
PaeI	GCATGC	1 cut(s)	353
PceI	AGGCCT	1 cut(s)	236
PkrI	GCNGC	2 cut(s)	32, 571
PleI	GAGTC	3 cut(s)	138, 219, 290
PpsI	GAGTC	3 cut(s)	138, 219, 290
PpuMI	RGGWCCY	1 cut(s)	89
Psp1406I	AACGTT	1 cut(s)	470
Psp5II	RGGWCCY	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	89
PspPPI	RGGWCCY	1 cut(s)	89
PstI	CTGCAG	2 cut(s)	532, 571
PsuI	RGATCY	2 cut(s)	524, 626
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	2 cut(s)	31, 570
Sau3AI	GATC	4 cut(s)	399, 504, 524, 626
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	3 cut(s)	138, 219, 291
ScrFI	CCNGG	2 cut(s)	184, 580
SetI	ASST	8 cut(s)	35, 94, 153, 185, 206, 307, 473, 568
SfcI	CTRYAG	3 cut(s)	152, 528, 567
SinI	GGWCC	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SphI	GCATGC	1 cut(s)	353
Sse9I	AATT	2 cut(s)	64, 323
SseBI	AGGCCT	1 cut(s)	236
SspI	AATATT	1 cut(s)	113
StuI	AGGCCT	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	182, 578
StyI	CCWWGG	3 cut(s)	231, 264, 444
TaaI	ACNGT	2 cut(s)	413, 549
TaiI	ACGT	1 cut(s)	473
TaqI	TCGA	1 cut(s)	320
TaqII	GACCGA	1 cut(s)	611
TasI	AATT	2 cut(s)	64, 323
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	1 cut(s)	549
TseI	GCWGC	2 cut(s)	30, 569
Tsp45I	GTSAC	1 cut(s)	549
TspDTI	ATGAA	3 cut(s)	114, 285, 406
TspRI	CASTG	1 cut(s)	418
Vha464I	CTTAAG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	89
XapI	RAATTY	1 cut(s)	323
XceI	RCATGY	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.