Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005425.1

Orthogroup ID

OG0004546

Physical Location & Seq

Genomic Coordinates Forward (+)

109158 .. 112856

Gene Structure 3699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005425.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3162 bp

atgtctgcaaaggtgtttcattcattcagagatgagaatcgtgatctccaaaagcaacttgggtgcatgagcgggatttttcagctgtttgatcgccggcatttcctctccggccggagcatcaatggccacagtcacaagagacttcccccaggtgagaatggcaaacaagaaatagatcccaaaagcagagcactgcccaaagctacagataaaaatcgaaaaaaggctgtcaaagagagacgaaactccacagaatcatccacaaccactgtttcttcatcttcttgttcatctagcttctcatcatctcttgaatacaacaaagcagctcagcaagaacaatccttgtctggccaaacaatttacaatgacagacacactcgggacctgtccatgaacaaaccgaatatttcaaagcccttaagccagcaatcatttgactcaacctacagagaagcccgtggtatttcagtcagacctggaggaaaagatggagtaggtcatagattgaaatacatagactccccaaggccttcacaaccactaaaacccatcaagccaagggtttctggtggcgagtcatttcaagttcatgccaagcttcgggaagcacatcgaaattccaacgaggagaaggatggttgcatgcgatttgcgccaaaagaagcaaggaggctgtcttatgatgaaagggcatcacgagatacagtgaaatccacaacaaaactcaaagaactcccaaggctttctttggacagcaaagaacgttccattaggagggcttgtagccctgaaacaagatcaagccatttcttcaaggatctgcagagggagaatgggaactgtgacaaaatgcttgacctgcagccagaacccggaagttctaaaagaccgaatgttgttgcaaagttgatgggcttggatctcttagattcagtgtcaaccagtgttactccattgaggctgattagtacctgtccatctgatagatttgatcccttgtccaaatcattgagaaaaacagatgaatccaagcaagatgttttgtctgggttcccaagaaatacgcagaagagcttcagctcactccagaggagaagtgccaattcagtcatgcagcccaccgcaaattccaagtttccaatagaaacagctccttggaggcagccacatggaagcaaaggtcttcctcaatcaactttcaactgtcaagaagaacctacaaaagcaccaaagtcatcaccttcagtatatggtgaaatggagaaaagactagcagaactagagttcaagaaatcaggaaaggacctccgagctcttaaacagatacttgaagcaatgcagaagagcaagcaaaactcagaggacaaaaaagaagcctcaaattttgcctctcaagtaagcaacaaaagtggtttgtgtgagagcacaatatcagcaagcaagagaaatacaaaacgtagcccatcacttccagccacagccatgggttccaaatccccaaagagttgcaaatcaccaatcatgatcatgaaacccggtaaactcatggagaaaacacacaactctgcttccacggtgatctccatggacaacagatcatgtccgcggaggcttcagactagcaaccctggtgacaacagaaaggaattgcttgacaggaaagccaaagatttgactccaagaaacattcatactagtgattctttcaatggacgtcttcgctccactgataagaattctaatgtgagaacttctaaagctgcacaaaaaccaaagatgccccacagtgaagaaaattccccgggcccaagtaggagcatcacgagcccaagactgcaaaacagaagatttggattggagaagcaatctgctccaaccactctatcatcagattcaagcatgaccagaaggcaacacagtaggcaatcattagaagcaagcaccccgggtagaaaactcgggccaaaatctcccagatttcatcaaagcaattgccaactgagcgagactagcaccagtacaagagctatgagtcaccaagatgataccacctctcagcaatctgaaagcaacaccagcttggcctcacatgcagacacagaagccacaagcattcatcagtcagatgagattagagatacttacatgaagcagcacagccaaaagcaaaacaggccagcagtagggttgagtgatgataggttaacagcagaaactgggaaagcttccttagaacaaccaagtcctatctccgttcttgattctacattctatagggacgactcgccttctcctgtgaagaagatatcaaatgcctttaaagatgatggtgggcaaaatctggatgaagcagagtatggaccaatggacctaggtctgatatccaatagtacaatgcccagtcttggtgcagagattgaccataaaaggttagagaacctgaagcacctgattcataatcatcgacatatgagcagcacacatgaagaacccatcttcgggcacattactttcctctgtgaccgctcaaatccagatcacatgtacatttcagatatattgctagcatcaggaattcttaggtatctcgaatctgcgtggacaaccattgagctccagacattagaacacctgatcaaccctaatttgttccttgcactggaagaaattagggcagatatagaaccttgggatgatggaaagagatgtgaaaagattctccagtcccaatcagatgaaaaaattcaaagaaagctagtgttcgatgtcgttaaagaattcctagttcaaaaattagttgtggagaactctttcaagcagtggttctcaccaaacaagctggcagaagggaaaccaagagggcagcagcttttgacagaattgtgctcccaggttgatcagctacaaagacgcaacttgaatggaaacctagatgatgaagatgaaagtttgacaagcatcttgttggaaaatttcatggatcaatcacagaattggacagtgtgtgatggtgaaattccgagtgtagtgttggatgttgagcgattgatctttaaagacttgataactgaaattgtgagcagtgatgcagttgaccatgtgggttggtctggggggcattgtaggcaactgttttccaagaaggggctctggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008017 GO:0008092 GO:0008150 GO:0015631 GO:0022603 GO:0022604 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051510 GO:0051513 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 VARLMGL

Protein Analysis

1053

Amino Acids

118.2

Weight (kDa)

9.36

Isoelectric Point (pI)

63.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46710 FvH4_6g46710 FvH4_6g46710 FvH4_6g46710
malus_domestica	MD09G1068400.v1.1 MD17G1061300.v1.1
prunus_persica	Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1
pyrus_communis	pycom12433g00110 pycom12433g00120 pycom17g06120
rosa_chinensis	RchiOBHm_Chr2g0165601
rosa_laevigata	RLG00000021542
rosa_multiflora	Rmu_co8268985.1_g000001 Rmu_co8395029.1_g000001 Rmu_sc0005425.1_g000021 Rmu_sc0035818.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085700
rosa_rugosa	Rorug02G0516300 Rorug02G0516400 Rorug02G0516400 Rorug02G0516400
rosa_samantha	Rh2AG582500 Rh2BG594600 Rh2CG564500 Rh2DG604500
rosa_wichuraiana	Rw0G016060 Rw2G048590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1723
Acc36I	ACCTGC	1 cut(s)	873
AccBSI	CCGCTC	2 cut(s)	72, 2532
AccII	CGCG	1 cut(s)	1612
AciI	CCGC	5 cut(s)	72, 1128, 1610, 1612, 2530
AclI	AACGTT	1 cut(s)	769
AclWI	GGATC	5 cut(s)	173, 831, 933, 992, 2994
AcoI	YGGCCR	3 cut(s)	112, 127, 355
AcuI	CTGAAG	4 cut(s)	1066, 1233, 1604, 2468
AcyI	GRCGYC	1 cut(s)	1720
AfaI	GTAC	4 cut(s)	976, 2026, 2398, 2552
AfiI	CCNNNNNNNGG	9 cut(s)	606, 780, 878, 2189, 2411, 2504, 2505, 2665, 3150
AflII	CTTAAG	1 cut(s)	424
AflIII	ACRYGT	1 cut(s)	2547
AhlI	ACTAGT	1 cut(s)	1700
AjnI	CCWGG	4 cut(s)	151, 481, 1633, 2895
Alw21I	GWGCWC	5 cut(s)	196, 1321, 1433, 2622, 2894
Alw26I	GTCTC	3 cut(s)	136, 235, 2006
AlwI	GGATC	5 cut(s)	173, 831, 933, 992, 2994
AlwNI	CAGNNNCTG	1 cut(s)	2222
Ama87I	CYCGRG	4 cut(s)	384, 1807, 1951, 1964
AoxI	GGCC	8 cut(s)	112, 127, 355, 533, 1810, 1967, 2088, 2180
ApaI	GGGCCC	1 cut(s)	1814
ApeKI	GCWGC	9 cut(s)	329, 868, 1120, 1168, 1766, 2158, 2481, 2869, 2872
Asp700I	GAANNNNTTC	4 cut(s)	1079, 2721, 2748, 2816
AspA2I	CCTAGG	1 cut(s)	2377
AspLEI	GCGC	1 cut(s)	661
AspS9I	GGNCC	7 cut(s)	388, 1309, 1810, 1811, 1967, 2366, 2374
AsuC2I	CCSGG	6 cut(s)	879, 1542, 1808, 1809, 1952, 1953
AsuHPI	GGTGA	9 cut(s)	167, 1236, 1271, 1512, 1594, 1649, 2033, 2826, 3029
AsuNHI	GCTAGC	1 cut(s)	2569
AvaI	CYCGRG	4 cut(s)	384, 1807, 1951, 1964
AvaII	GGWCC	4 cut(s)	388, 1309, 2366, 2374
AvrII	CCTAGG	1 cut(s)	2377
BaeGI	GKGCMC	2 cut(s)	1814, 2511
BalI	TGGCCA	2 cut(s)	129, 357
BanII	GRGCYC	5 cut(s)	1321, 1814, 1835, 2622, 3156
BauI	CACGAG	2 cut(s)	702, 1828
BbsI	GAAGAC	2 cut(s)	1181, 1715
Bbv12I	GWGCWC	5 cut(s)	196, 1321, 1433, 2622, 2894
BbvI	GCAGC	9 cut(s)	341, 880, 1132, 1180, 1753, 2170, 2493, 2881, 2884
BciT130I	CCWGG	4 cut(s)	153, 483, 1635, 2897
BclI	TGATCA	3 cut(s)	1530, 2640, 2902
BcnI	CCSGG	6 cut(s)	879, 1542, 1808, 1809, 1952, 1953
BcoDI	GTCTC	3 cut(s)	136, 235, 2006
BcuI	ACTAGT	1 cut(s)	1700
BfmI	CTRYAG	5 cut(s)	207, 451, 827, 866, 2278
BfrI	CTTAAG	1 cut(s)	424
BfuAI	ACCTGC	1 cut(s)	873
BisI	GCNGC	9 cut(s)	330, 869, 1121, 1169, 1767, 2159, 2482, 2870, 2873
BlnI	CCTAGG	1 cut(s)	2377
BlpI	GCTNAGC	1 cut(s)	333
BlsI	GCNGC	9 cut(s)	331, 870, 1122, 1170, 1768, 2160, 2483, 2871, 2874
Bme18I	GGWCC	4 cut(s)	388, 1309, 2366, 2374
BmeT110I	CYCGRG	4 cut(s)	384, 1807, 1951, 1964
BmgT120I	GGNCC	7 cut(s)	388, 1309, 1810, 1811, 1967, 2366, 2374
BmiI	GGNNCC	4 cut(s)	389, 1058, 1495, 1812
BmrI	ACTGGG	2 cut(s)	2232, 2400
BmsI	GCATC	7 cut(s)	129, 707, 1773, 1833, 2582, 2973, 3082
BmtI	GCTAGC	1 cut(s)	2573
BmuI	ACTGGG	2 cut(s)	2232, 2400
BoxI	GACNNNNGTC	1 cut(s)	2379
BpiI	GAAGAC	2 cut(s)	1181, 1715
BpmI	CTGGAG	4 cut(s)	504, 1076, 2606, 2711
Bpu1102I	GCTNAGC	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	1383
BpuMI	CCSGG	6 cut(s)	879, 1542, 1808, 1809, 1952, 1953
BsaBI	GATNNNNATC	2 cut(s)	36, 216
BsaHI	GRCGYC	1 cut(s)	1720
BsaXI	ACNNNNNCTCC	4 cut(s)	509, 539, 772, 802
Bsc4I	CCNNNNNNNGG	9 cut(s)	606, 780, 878, 2189, 2411, 2504, 2505, 2665, 3150
Bse118I	RCCGGY	1 cut(s)	96
Bse1I	ACTGG	6 cut(s)	948, 2022, 2227, 2406, 2670, 2728
Bse3DI	GCAATG	1 cut(s)	1347
Bse8I	GATNNNNATC	2 cut(s)	36, 216
BseBI	CCWGG	4 cut(s)	153, 483, 1635, 2897
BseGI	GGATG	5 cut(s)	260, 646, 2356, 2704, 3046
BseJI	GATNNNNATC	2 cut(s)	36, 216
BseLI	CCNNNNNNNGG	9 cut(s)	606, 780, 878, 2189, 2411, 2504, 2505, 2665, 3150
BseMI	GCAATG	1 cut(s)	1347
BseMII	CTCAG	4 cut(s)	347, 1377, 1997, 2075
BseNI	ACTGG	6 cut(s)	948, 2022, 2227, 2406, 2670, 2728
BseRI	GAGGAG	2 cut(s)	647, 1111
BseSI	GKGCMC	2 cut(s)	1814, 2511
BseX3I	CGGCCG	1 cut(s)	112
BseXI	GCAGC	9 cut(s)	341, 880, 1132, 1180, 1753, 2170, 2493, 2881, 2884
BsgI	GTGCAG	2 cut(s)	1752, 2436
Bsh1236I	CGCG	1 cut(s)	1612
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	8 cut(s)	114, 129, 357, 535, 1812, 1969, 2090, 2182
BsiEI	CGRYCG	1 cut(s)	115
BsiHKAI	GWGCWC	5 cut(s)	196, 1321, 1433, 2622, 2894
BsiHKCI	CYCGRG	4 cut(s)	384, 1807, 1951, 1964
BsiSI	CCGG	7 cut(s)	97, 111, 115, 879, 1542, 1808, 1952
BslFI	GGGAC	3 cut(s)	401, 2297, 2716
BslI	CCNNNNNNNGG	9 cut(s)	606, 780, 878, 2189, 2411, 2504, 2505, 2665, 3150
BsmAI	GTCTC	3 cut(s)	136, 235, 2006
BsmBI	CGTCTC	1 cut(s)	235
BsmFI	GGGAC	3 cut(s)	401, 2297, 2716
BsmI	GAATGC	1 cut(s)	2118
BsnI	GGCC	8 cut(s)	114, 129, 357, 535, 1812, 1969, 2090, 2182
BsoBI	CYCGRG	4 cut(s)	384, 1807, 1951, 1964
Bsp120I	GGGCCC	1 cut(s)	1810
Bsp1286I	GDGCHC	9 cut(s)	196, 1321, 1433, 1814, 1835, 2511, 2622, 2894, 3156
Bsp1407I	TGTACA	1 cut(s)	2550
Bsp1720I	GCTNAGC	1 cut(s)	333
Bsp19I	CCATGG	2 cut(s)	1488, 1590
BspACI	CCGC	5 cut(s)	72, 1128, 1610, 1612, 2530
BspANI	GGCC	8 cut(s)	114, 129, 357, 535, 1812, 1969, 2090, 2182
BspCNI	CTCAG	4 cut(s)	346, 1376, 1998, 2074
BspFNI	CGCG	1 cut(s)	1612
BspHI	TCATGA	2 cut(s)	1527, 1533
BspLI	GGNNCC	4 cut(s)	389, 1058, 1495, 1812
BspMAI	CTGCAG	2 cut(s)	831, 870
BspMI	ACCTGC	1 cut(s)	873
BspOI	GCTAGC	1 cut(s)	2573
BspPI	GGATC	5 cut(s)	173, 831, 933, 992, 2994
BspQI	GCTCTTC	2 cut(s)	1070, 1343
BspTI	CTTAAG	1 cut(s)	424
BsrBI	CCGCTC	2 cut(s)	72, 2532
BsrDI	GCAATG	1 cut(s)	1347
BsrFI	RCCGGY	1 cut(s)	96
BsrGI	TGTACA	1 cut(s)	2550
BsrI	ACTGG	6 cut(s)	948, 2022, 2227, 2406, 2670, 2728
BssAI	RCCGGY	1 cut(s)	96
BssNI	GRCGYC	1 cut(s)	1720
BssSI	CACGAG	2 cut(s)	702, 1828
BssT1I	CCWWGG	8 cut(s)	530, 563, 743, 1160, 1488, 1590, 2377, 2693
Bst2BI	CACGAG	2 cut(s)	702, 1828
Bst2UI	CCWGG	4 cut(s)	153, 483, 1635, 2897
Bst6I	CTCTTC	2 cut(s)	1070, 1343
BstACI	GRCGYC	1 cut(s)	1720
BstAFI	CTTAAG	1 cut(s)	424
BstAUI	TGTACA	1 cut(s)	2550
BstC8I	GCNNGC	9 cut(s)	98, 431, 650, 1355, 1444, 1945, 2184, 2571, 2847
BstDEI	CTNAG	7 cut(s)	333, 931, 1363, 2006, 2061, 2236, 2585
BstDSI	CCRYGG	5 cut(s)	463, 1488, 1578, 1590, 1610
BstF5I	GGATG	5 cut(s)	260, 646, 2356, 2704, 3046
BstFNI	CGCG	1 cut(s)	1612
BstHHI	GCGC	1 cut(s)	661
BstMAI	GTCTC	3 cut(s)	136, 235, 2006
BstMCI	CGRYCG	1 cut(s)	115
BstNI	CCWGG	4 cut(s)	153, 483, 1635, 2897
BstNSI	RCATGY	3 cut(s)	652, 2099, 2551
BstPAI	GACNNNNGTC	1 cut(s)	2379
BstSFI	CTRYAG	5 cut(s)	207, 451, 827, 866, 2278
BstSLI	GKGCMC	2 cut(s)	1814, 2511
BstUI	CGCG	1 cut(s)	1612
BstV1I	GCAGC	9 cut(s)	341, 880, 1132, 1180, 1753, 2170, 2493, 2881, 2884
BstV2I	GAAGAC	2 cut(s)	1181, 1715
BstX2I	RGATCY	3 cut(s)	178, 823, 925
BstXI	CCANNNNNNTGG	1 cut(s)	1489
BstYI	RGATCY	3 cut(s)	178, 823, 925
BstZI	CGGCCG	1 cut(s)	112
BsuRI	GGCC	8 cut(s)	114, 129, 357, 535, 1812, 1969, 2090, 2182
BtgI	CCRYGG	5 cut(s)	463, 1488, 1578, 1590, 1610
BtsCI	GGATG	5 cut(s)	260, 646, 2356, 2704, 3046
BtsI	GCAGTG	3 cut(s)	194, 2831, 3094
BveI	ACCTGC	1 cut(s)	873
Cac8I	GCNNGC	9 cut(s)	98, 431, 650, 1355, 1444, 1945, 2184, 2571, 2847
CaiI	CAGNNNCTG	1 cut(s)	2222
CciI	TCATGA	2 cut(s)	1527, 1533
CfoI	GCGC	1 cut(s)	661
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	7 cut(s)	388, 1309, 1810, 1811, 1967, 2366, 2374
Cfr42I	CCGCGG	1 cut(s)	1613
Cfr9I	CCCGGG	2 cut(s)	1807, 1951
CseI	GACGC	1 cut(s)	2925
Csp6I	GTAC	4 cut(s)	975, 2025, 2397, 2551
CspCI	CAANNNNNGTGG	2 cut(s)	1396, 1431
CviQI	GTAC	4 cut(s)	975, 2025, 2397, 2551
DdeI	CTNAG	7 cut(s)	333, 931, 1363, 2006, 2061, 2236, 2585
DraI	TTTAAA	2 cut(s)	2326, 3061
EaeI	YGGCCR	3 cut(s)	112, 127, 355
EagI	CGGCCG	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	1070, 1343
EarI	CTCTTC	2 cut(s)	1070, 1343
Ecl136II	GAGCTC	2 cut(s)	1319, 2620
EclXI	CGGCCG	1 cut(s)	112
Eco130I	CCWWGG	8 cut(s)	530, 563, 743, 1160, 1488, 1590, 2377, 2693
Eco147I	AGGCCT	1 cut(s)	535
Eco24I	GRGCYC	5 cut(s)	1321, 1814, 1835, 2622, 3156
Eco32I	GATATC	2 cut(s)	2313, 2388
Eco47I	GGWCC	4 cut(s)	388, 1309, 2366, 2374
Eco52I	CGGCCG	1 cut(s)	112
Eco53kI	GAGCTC	2 cut(s)	1319, 2620
Eco57I	CTGAAG	4 cut(s)	1066, 1233, 1604, 2468
Eco88I	CYCGRG	4 cut(s)	384, 1807, 1951, 1964
EcoICRI	GAGCTC	2 cut(s)	1319, 2620
EcoO109I	RGGNCCY	2 cut(s)	388, 1309
EcoRI	GAATTC	3 cut(s)	1741, 2580, 2783
EcoRII	CCWGG	4 cut(s)	151, 481, 1633, 2895
EcoRV	GATATC	2 cut(s)	2313, 2388
EcoT14I	CCWWGG	8 cut(s)	530, 563, 743, 1160, 1488, 1590, 2377, 2693
EcoT38I	GRGCYC	5 cut(s)	1321, 1814, 1835, 2622, 3156
ErhI	CCWWGG	8 cut(s)	530, 563, 743, 1160, 1488, 1590, 2377, 2693
Esp3I	CGTCTC	1 cut(s)	235
FalI	AAGNNNNNCTT	2 cut(s)	736, 768
FaqI	GGGAC	3 cut(s)	401, 2297, 2716
FauI	CCCGC	1 cut(s)	65
FauNDI	CATATG	1 cut(s)	2475
FbaI	TGATCA	3 cut(s)	1530, 2640, 2902
Fnu4HI	GCNGC	9 cut(s)	330, 869, 1121, 1169, 1767, 2159, 2482, 2870, 2873
FokI	GGATG	5 cut(s)	247, 653, 2363, 2711, 3053
FriOI	GRGCYC	5 cut(s)	1321, 1814, 1835, 2622, 3156
Fsp4HI	GCNGC	9 cut(s)	330, 869, 1121, 1169, 1767, 2159, 2482, 2870, 2873
GlaI	GCGC	1 cut(s)	660
GluI	GCNGC	9 cut(s)	330, 869, 1121, 1169, 1767, 2159, 2482, 2870, 2873
GsuI	CTGGAG	4 cut(s)	504, 1076, 2606, 2711
HaeIII	GGCC	8 cut(s)	114, 129, 357, 535, 1812, 1969, 2090, 2182
HapII	CCGG	7 cut(s)	97, 111, 115, 879, 1542, 1808, 1952
HgaI	GACGC	1 cut(s)	2925
HhaI	GCGC	1 cut(s)	661
Hin1I	GRCGYC	1 cut(s)	1720
Hin6I	GCGC	1 cut(s)	659
HinP1I	GCGC	1 cut(s)	659
HincII	GTYRAC	3 cut(s)	945, 2211, 3100
HindII	GTYRAC	3 cut(s)	945, 2211, 3100
HindIII	AAGCTT	2 cut(s)	602, 2229
HpaI	GTTAAC	1 cut(s)	2211
HpaII	CCGG	7 cut(s)	97, 111, 115, 879, 1542, 1808, 1952
HphI	GGTGA	9 cut(s)	167, 1236, 1271, 1512, 1594, 1649, 2033, 2826, 3029
Hpy166II	GTNNAC	5 cut(s)	945, 1547, 2211, 2607, 3100
Hpy8I	GTNNAC	5 cut(s)	945, 1547, 2211, 2607, 3100
HpyAV	CCTTC	7 cut(s)	546, 631, 1257, 1908, 2304, 2846, 3142
HpyCH4IV	ACGT	3 cut(s)	769, 1462, 1720
HpyF3I	CTNAG	7 cut(s)	333, 931, 1363, 2006, 2061, 2236, 2585
HpySE526I	ACGT	3 cut(s)	769, 1462, 1720
Hsp92I	GRCGYC	1 cut(s)	1720
HspAI	GCGC	1 cut(s)	659
KroI	GCCGGC	1 cut(s)	96
KroNI	GCCGGC	1 cut(s)	98
Ksp22I	TGATCA	3 cut(s)	1530, 2640, 2902
KspAI	GTTAAC	1 cut(s)	2211
KspI	CCGCGG	1 cut(s)	1613
LguI	GCTCTTC	2 cut(s)	1070, 1343
LmnI	GCTCC	7 cut(s)	117, 1162, 1733, 1821, 1882, 2625, 2897
Lsp1109I	GCAGC	9 cut(s)	341, 880, 1132, 1180, 1753, 2170, 2493, 2881, 2884
LweI	GCATC	7 cut(s)	129, 707, 1773, 1833, 2582, 2973, 3082
MaeII	ACGT	3 cut(s)	769, 1462, 1720
MaeIII	GTNAC	6 cut(s)	134, 848, 952, 1637, 2039, 2525
MbiI	CCGCTC	2 cut(s)	72, 2532
MfeI	CAATTG	1 cut(s)	1996
MflI	RGATCY	3 cut(s)	178, 823, 925
MhlI	GDGCHC	9 cut(s)	196, 1321, 1433, 1814, 1835, 2511, 2622, 2894, 3156
MlsI	TGGCCA	2 cut(s)	129, 357
MluNI	TGGCCA	2 cut(s)	129, 357
MlyI	GAGTC	6 cut(s)	437, 518, 590, 1675, 2047, 2282
MmeI	TCCRAC	4 cut(s)	651, 1904, 2952, 3018
Mox20I	TGGCCA	2 cut(s)	129, 357
MroNI	GCCGGC	1 cut(s)	96
MroXI	GAANNNNTTC	4 cut(s)	1079, 2721, 2748, 2816
MscI	TGGCCA	2 cut(s)	129, 357
MseI	TTAA	6 cut(s)	425, 1323, 2210, 2325, 2778, 3060
MslI	CAYNNNNRTG	4 cut(s)	1487, 1532, 1701, 2046
Msp20I	TGGCCA	2 cut(s)	129, 357
MspA1I	CMGCKG	2 cut(s)	85, 1612
MspCI	CTTAAG	1 cut(s)	424
MspI	CCGG	7 cut(s)	97, 111, 115, 879, 1542, 1808, 1952
MunI	CAATTG	1 cut(s)	1996
Mva1269I	GAATGC	1 cut(s)	2118
MvaI	CCWGG	4 cut(s)	153, 483, 1635, 2897
MvnI	CGCG	1 cut(s)	1612
NaeI	GCCGGC	1 cut(s)	98
NciI	CCSGG	6 cut(s)	879, 1542, 1808, 1809, 1952, 1953
NcoI	CCATGG	2 cut(s)	1488, 1590
NdeI	CATATG	1 cut(s)	2475
NgoMIV	GCCGGC	1 cut(s)	96
NheI	GCTAGC	1 cut(s)	2569
NlaIV	GGNNCC	4 cut(s)	389, 1058, 1495, 1812
NmuCI	GTSAC	5 cut(s)	134, 848, 1637, 2039, 2525
NspI	RCATGY	3 cut(s)	652, 2099, 2551
PaeI	GCATGC	1 cut(s)	652
PagI	TCATGA	2 cut(s)	1527, 1533
PceI	AGGCCT	1 cut(s)	535
PciI	ACATGT	1 cut(s)	2547
PciSI	GCTCTTC	2 cut(s)	1070, 1343
PctI	GAATGC	1 cut(s)	2118
PdiI	GCCGGC	1 cut(s)	98
PdmI	GAANNNNTTC	4 cut(s)	1079, 2721, 2748, 2816
PkrI	GCNGC	9 cut(s)	331, 870, 1122, 1170, 1768, 2160, 2483, 2871, 2874
PleI	GAGTC	6 cut(s)	437, 518, 589, 1675, 2046, 2282
PpsI	GAGTC	6 cut(s)	437, 518, 589, 1675, 2046, 2282
PpuMI	RGGWCCY	2 cut(s)	388, 1309
PscI	ACATGT	1 cut(s)	2547
PshAI	GACNNNNGTC	1 cut(s)	2379
Psp124BI	GAGCTC	2 cut(s)	1321, 2622
Psp1406I	AACGTT	1 cut(s)	769
Psp5II	RGGWCCY	2 cut(s)	388, 1309
Psp6I	CCWGG	4 cut(s)	151, 481, 1633, 2895
PspGI	CCWGG	4 cut(s)	151, 481, 1633, 2895
PspN4I	GGNNCC	4 cut(s)	389, 1058, 1495, 1812
PspOMI	GGGCCC	1 cut(s)	1810
PspPI	GGNCC	7 cut(s)	388, 1309, 1810, 1811, 1967, 2366, 2374
PspPPI	RGGWCCY	2 cut(s)	388, 1309
PstI	CTGCAG	2 cut(s)	831, 870
PstNI	CAGNNNCTG	1 cut(s)	2222
PsuI	RGATCY	3 cut(s)	178, 823, 925
PvuII	CAGCTG	1 cut(s)	85
RsaI	GTAC	4 cut(s)	976, 2026, 2398, 2552
RsaNI	GTAC	4 cut(s)	975, 2025, 2397, 2551
RseI	CAYNNNNRTG	4 cut(s)	1487, 1532, 1701, 2046
SacI	GAGCTC	2 cut(s)	1321, 2622
SacII	CCGCGG	1 cut(s)	1613
SapI	GCTCTTC	2 cut(s)	1070, 1343
SaqAI	TTAA	6 cut(s)	425, 1323, 2210, 2325, 2778, 3060
SatI	GCNGC	9 cut(s)	330, 869, 1121, 1169, 1767, 2159, 2482, 2870, 2873
Sau96I	GGNCC	7 cut(s)	388, 1309, 1810, 1811, 1967, 2366, 2374
SchI	GAGTC	6 cut(s)	437, 518, 590, 1675, 2047, 2282
SduI	GDGCHC	9 cut(s)	196, 1321, 1433, 1814, 1835, 2511, 2622, 2894, 3156
SfaNI	GCATC	7 cut(s)	129, 707, 1773, 1833, 2582, 2973, 3082
SfcI	CTRYAG	5 cut(s)	207, 451, 827, 866, 2278
Sfr303I	CCGCGG	1 cut(s)	1613
SgrBI	CCGCGG	1 cut(s)	1613
SinI	GGWCC	4 cut(s)	388, 1309, 2366, 2374
SmaI	CCCGGG	2 cut(s)	1809, 1953
SmiMI	CAYNNNNRTG	4 cut(s)	1487, 1532, 1701, 2046
SmlI	CTYRAG	2 cut(s)	424, 1398
SmoI	CTYRAG	2 cut(s)	424, 1398
SpeI	ACTAGT	1 cut(s)	1700
SphI	GCATGC	1 cut(s)	652
SseBI	AGGCCT	1 cut(s)	535
SsiI	CCGC	5 cut(s)	72, 1128, 1610, 1612, 2530
SspI	AATATT	1 cut(s)	412
SstI	GAGCTC	2 cut(s)	1321, 2622
StuI	AGGCCT	1 cut(s)	535
StyI	CCWWGG	8 cut(s)	530, 563, 743, 1160, 1488, 1590, 2377, 2693
TaiI	ACGT	3 cut(s)	772, 1465, 1723
TaqI	TCGA	5 cut(s)	220, 619, 2470, 2595, 2769
TaqII	GACCGA	1 cut(s)	910
TatI	WGTACW	3 cut(s)	2024, 2396, 2550
Tru1I	TTAA	6 cut(s)	425, 1323, 2210, 2325, 2778, 3060
Tru9I	TTAA	6 cut(s)	425, 1323, 2210, 2325, 2778, 3060
TseFI	GTSAC	5 cut(s)	134, 848, 1637, 2039, 2525
TseI	GCWGC	9 cut(s)	329, 868, 1120, 1168, 1766, 2158, 2481, 2869, 2872
Tsp45I	GTSAC	5 cut(s)	134, 848, 1637, 2039, 2525
TspGWI	ACGGA	1 cut(s)	2248
TspMI	CCCGGG	2 cut(s)	1807, 1951
Vha464I	CTTAAG	1 cut(s)	424
VpaK11BI	GGWCC	4 cut(s)	388, 1309, 2366, 2374
XceI	RCATGY	3 cut(s)	652, 2099, 2551
XcmI	CCANNNNNNNNNTGG	1 cut(s)	56
XmaI	CCCGGG	2 cut(s)	1807, 1951
XmaJI	CCTAGG	1 cut(s)	2377
XmnI	GAANNNNTTC	4 cut(s)	1079, 2721, 2748, 2816
ZraI	GACGTC	1 cut(s)	1721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.