Rmu_sc0035818.1_g000001

longifolia

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035818.1
Physical Location & Seq
Reverse (-)
2 .. 1579
1578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035818.1_g000001.1.cds

Sequence Viewer

Length: 1496 bp
ctgcccaaagctacagataaaaatcgaaaaaaggctgtcaaagagagacgaaactccacagaatcatccacaaccactgtttcttcatcttcttgttcatctagcttctcatcatctcttgaatacaacaaagcagctcagcaagaacaatccttgtctggccaaacaatttacaatgacagacacactcgggacctgtccatgaacaaaccgaatatttcaaagcccttaagccagcaatcatttgactcaacctacagagaagcccgtggtatttcagtcagacctggaggaaaagatggagtaggtcatagattgaaatacatagactccccaaggccttcacaaccactaaaacccatcaagccaagggtttctggtggcgagtcatttcaagttcatgccaagcttcgggaagcacatcgaaattccaacgaggagaaggatggttgcatgcgatttgcgccaaaagaagcaaggaggctgtcttatgatgaaagggcatcacgagatacagtgaaatccacaacaaaactcaaagaactcccaaggctttctttggacagcaaagaacgttccattaggagggcttgtagccctgaaacaagatcaagccatttcttcaaggatctgcagagggagaatgggaactgtgacaaaatgcttgacctgcagccagaacccggaagttctaaaagaccgaatgttgttgcaaagttgatgggcttggatctcttagattcagtgtcaaccagtgttactccattgaggctgattagtacctgtccatctgatagatttgatcccttgtccaaatcattgagaaaaacagatgaatccaagcaagatgttttgtctgggttcccaagaaatacgcagaagagcttcagctcactccagaggagaagtgccaattcagtcatgcagcccaccgcaaattccaagtttccaatagaaacagctccttggaggcagccacatggaagcaaaggtcttcctcaatcaactttcaactgtcaagaagaacctacaaaagcaccaaagtcatcaccttcagtatatggtgaaatggagaaaagactagcagaactagagttcaagaaatcaggaaaggacctccgagctcttaaacagatacttgaagcaatgcagaagagcaagcaaaactcagaggacaaaaaagaagcctcaaattttgcctctcaagtaagcaacaaaagtggtttgtgtgagagcacaatatcagcaagcaagagaaatacaaaacgtagcccatcacttccagccacagccatgggttccaaatccccaaagagttgcaaatcaccaatcatgatcatgaaacccggtaaactcatggagaaaacacacaactctgcttccacggtgatctccatggacaacagatcatgtccgcggaggcttcagactagcaaccctggtgacaacagaaaggaattgcttgacaggaaagccaaagatttgactccaagaaa

Protein Analysis

498

Amino Acids

55.52

Weight (kDa)

10.01

Isoelectric Point (pI)

62.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 678
AccII CGCG 1 cut(s) 1417
AciI CCGC 3 cut(s) 933, 1415, 1417
AclI AACGTT 1 cut(s) 574
AclWI GGATC 3 cut(s) 636, 738, 797
AcoI YGGCCR 1 cut(s) 160
AcsI RAATTY 3 cut(s) 427, 937, 1192
AcuI CTGAAG 3 cut(s) 871, 1038, 1409
AfaI GTAC 1 cut(s) 781
AfiI CCNNNNNNNGG 3 cut(s) 411, 585, 683
AflII CTTAAG 1 cut(s) 229
AgsI TTSAA 8 cut(s) 122, 222, 319, 395, 625, 1012, 1099, 1142
AjnI CCWGG 2 cut(s) 286, 1438
AluBI AGCT 8 cut(s) 11, 105, 137, 409, 885, 891, 962, 1124
AluI AGCT 8 cut(s) 11, 105, 137, 409, 885, 891, 962, 1124
Alw21I GWGCWC 2 cut(s) 1126, 1238
Alw26I GTCTC 1 cut(s) 40
AlwI GGATC 3 cut(s) 636, 738, 797
Ama87I CYCGRG 1 cut(s) 189
AoxI GGCC 2 cut(s) 160, 338
ApeKI GCWGC 4 cut(s) 134, 673, 925, 973
ApoI RAATTY 3 cut(s) 427, 937, 1192
Asp700I GAANNNNTTC 1 cut(s) 884
AspLEI GCGC 1 cut(s) 466
AspS9I GGNCC 2 cut(s) 193, 1114
AsuC2I CCSGG 2 cut(s) 684, 1347
AsuHPI GGTGA 5 cut(s) 1041, 1076, 1317, 1399, 1454
AvaI CYCGRG 1 cut(s) 189
AvaII GGWCC 2 cut(s) 193, 1114
BalI TGGCCA 1 cut(s) 162
BanII GRGCYC 1 cut(s) 1126
BauI CACGAG 1 cut(s) 507
BbsI GAAGAC 1 cut(s) 986
Bbv12I GWGCWC 2 cut(s) 1126, 1238
BbvI GCAGC 4 cut(s) 146, 685, 937, 985
BccI CCATC 6 cut(s) 293, 368, 440, 715, 796, 1282
BciT130I CCWGG 2 cut(s) 288, 1440
BclI TGATCA 1 cut(s) 1335
BcnI CCSGG 2 cut(s) 684, 1347
BcoDI GTCTC 1 cut(s) 40
BfaI CTAG 4 cut(s) 102, 1082, 1091, 1431
BfmI CTRYAG 4 cut(s) 12, 256, 632, 671
BfrI CTTAAG 1 cut(s) 229
BfuAI ACCTGC 1 cut(s) 678
BisI GCNGC 4 cut(s) 135, 674, 926, 974
BlpI GCTNAGC 1 cut(s) 138
BlsI GCNGC 4 cut(s) 136, 675, 927, 975
Bme1390I CCNGG 4 cut(s) 288, 684, 1347, 1440
Bme18I GGWCC 2 cut(s) 193, 1114
BmeT110I CYCGRG 1 cut(s) 189
BmgT120I GGNCC 2 cut(s) 193, 1114
BmiI GGNNCC 3 cut(s) 194, 863, 1300
BmrFI CCNGG 4 cut(s) 288, 684, 1347, 1440
BmsI GCATC 1 cut(s) 512
BpiI GAAGAC 1 cut(s) 986
BpmI CTGGAG 2 cut(s) 309, 881
Bpu1102I GCTNAGC 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 1188
BpuMI CCSGG 2 cut(s) 684, 1347
BsaBI GATNNNNATC 1 cut(s) 21
BsaXI ACNNNNNCTCC 4 cut(s) 314, 344, 577, 607
Bsc4I CCNNNNNNNGG 3 cut(s) 411, 585, 683
Bse1I ACTGG 1 cut(s) 753
Bse3DI GCAATG 1 cut(s) 1152
Bse8I GATNNNNATC 1 cut(s) 21
BseBI CCWGG 2 cut(s) 288, 1440
BseGI GGATG 2 cut(s) 65, 451
BseJI GATNNNNATC 1 cut(s) 21
BseLI CCNNNNNNNGG 3 cut(s) 411, 585, 683
BseMI GCAATG 1 cut(s) 1152
BseMII CTCAG 2 cut(s) 152, 1182
BseNI ACTGG 1 cut(s) 753
BseRI GAGGAG 2 cut(s) 452, 916
BseXI GCAGC 4 cut(s) 146, 685, 937, 985
Bsh1236I CGCG 1 cut(s) 1417
BshFI GGCC 2 cut(s) 162, 340
BsiHKAI GWGCWC 2 cut(s) 1126, 1238
BsiHKCI CYCGRG 1 cut(s) 189
BsiSI CCGG 2 cut(s) 684, 1347
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 3 cut(s) 411, 585, 683
BsmAI GTCTC 1 cut(s) 40
BsmBI CGTCTC 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 2 cut(s) 162, 340
BsoBI CYCGRG 1 cut(s) 189
Bsp1286I GDGCHC 2 cut(s) 1126, 1238
Bsp143I GATC 7 cut(s) 608, 628, 730, 802, 1335, 1389, 1406
Bsp1720I GCTNAGC 1 cut(s) 138
Bsp19I CCATGG 2 cut(s) 1293, 1395
BspACI CCGC 3 cut(s) 933, 1415, 1417
BspANI GGCC 2 cut(s) 162, 340
BspCNI CTCAG 2 cut(s) 151, 1181
BspFNI CGCG 1 cut(s) 1417
BspHI TCATGA 2 cut(s) 1332, 1338
BspLI GGNNCC 3 cut(s) 194, 863, 1300
BspMAI CTGCAG 2 cut(s) 636, 675
BspMI ACCTGC 1 cut(s) 678
BspPI GGATC 3 cut(s) 636, 738, 797
BspQI GCTCTTC 2 cut(s) 875, 1148
BspTI CTTAAG 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 1152
BsrI ACTGG 1 cut(s) 753
BssMI GATC 7 cut(s) 608, 628, 730, 802, 1335, 1389, 1406
BssSI CACGAG 1 cut(s) 507
BssT1I CCWWGG 6 cut(s) 335, 368, 548, 965, 1293, 1395
Bst2BI CACGAG 1 cut(s) 507
Bst2UI CCWGG 2 cut(s) 288, 1440
Bst4CI ACNGT 5 cut(s) 79, 517, 653, 1016, 1387
Bst6I CTCTTC 2 cut(s) 875, 1148
BstAFI CTTAAG 1 cut(s) 229
BstC8I GCNNGC 4 cut(s) 236, 455, 1160, 1249
BstDEI CTNAG 3 cut(s) 138, 736, 1168
BstDSI CCRYGG 5 cut(s) 268, 1293, 1383, 1395, 1415
BstF5I GGATG 2 cut(s) 65, 451
BstFNI CGCG 1 cut(s) 1417
BstHHI GCGC 1 cut(s) 466
BstKTI GATC 7 cut(s) 611, 631, 733, 805, 1338, 1392, 1409
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 7 cut(s) 608, 628, 730, 802, 1335, 1389, 1406
BstMWI GCNNNNNNNGC 2 cut(s) 463, 670
BstNI CCWGG 2 cut(s) 288, 1440
BstNSI RCATGY 1 cut(s) 457
BstSCI CCNGG 4 cut(s) 286, 682, 1345, 1438
BstSFI CTRYAG 4 cut(s) 12, 256, 632, 671
BstUI CGCG 1 cut(s) 1417
BstV1I GCAGC 4 cut(s) 146, 685, 937, 985
BstV2I GAAGAC 1 cut(s) 986
BstX2I RGATCY 2 cut(s) 628, 730
BstXI CCANNNNNNTGG 1 cut(s) 1294
BstYI RGATCY 2 cut(s) 628, 730
BsuRI GGCC 2 cut(s) 162, 340
BtgI CCRYGG 5 cut(s) 268, 1293, 1383, 1395, 1415
BtsCI GGATG 2 cut(s) 65, 451
BtsIMutI CAGTG 4 cut(s) 75, 522, 750, 760
BveI ACCTGC 1 cut(s) 678
Cac8I GCNNGC 4 cut(s) 236, 455, 1160, 1249
CciI TCATGA 2 cut(s) 1332, 1338
CfoI GCGC 1 cut(s) 466
Cfr13I GGNCC 2 cut(s) 193, 1114
Cfr42I CCGCGG 1 cut(s) 1418
Csp6I GTAC 1 cut(s) 780
CspCI CAANNNNNGTGG 2 cut(s) 1201, 1236
CviQI GTAC 1 cut(s) 780
DdeI CTNAG 3 cut(s) 138, 736, 1168
DpnI GATC 7 cut(s) 610, 630, 732, 804, 1337, 1391, 1408
DpnII GATC 7 cut(s) 608, 628, 730, 802, 1335, 1389, 1406
EaeI YGGCCR 1 cut(s) 160
Eam1104I CTCTTC 2 cut(s) 875, 1148
EarI CTCTTC 2 cut(s) 875, 1148
Ecl136II GAGCTC 1 cut(s) 1124
Eco130I CCWWGG 6 cut(s) 335, 368, 548, 965, 1293, 1395
Eco147I AGGCCT 1 cut(s) 340
Eco24I GRGCYC 1 cut(s) 1126
Eco47I GGWCC 2 cut(s) 193, 1114
Eco53kI GAGCTC 1 cut(s) 1124
Eco57I CTGAAG 3 cut(s) 871, 1038, 1409
Eco88I CYCGRG 1 cut(s) 189
EcoICRI GAGCTC 1 cut(s) 1124
EcoO109I RGGNCCY 2 cut(s) 193, 1114
EcoRII CCWGG 2 cut(s) 286, 1438
EcoT14I CCWWGG 6 cut(s) 335, 368, 548, 965, 1293, 1395
EcoT38I GRGCYC 1 cut(s) 1126
ErhI CCWWGG 6 cut(s) 335, 368, 548, 965, 1293, 1395
Esp3I CGTCTC 1 cut(s) 40
FalI AAGNNNNNCTT 2 cut(s) 541, 573
FaqI GGGAC 1 cut(s) 206
FbaI TGATCA 1 cut(s) 1335
Fnu4HI GCNGC 4 cut(s) 135, 674, 926, 974
FokI GGATG 2 cut(s) 52, 458
FriOI GRGCYC 1 cut(s) 1126
Fsp4HI GCNGC 4 cut(s) 135, 674, 926, 974
FspBI CTAG 4 cut(s) 102, 1082, 1091, 1431
GlaI GCGC 1 cut(s) 465
GluI GCNGC 4 cut(s) 135, 674, 926, 974
GsuI CTGGAG 2 cut(s) 309, 881
HaeIII GGCC 2 cut(s) 162, 340
HapII CCGG 2 cut(s) 684, 1347
HhaI GCGC 1 cut(s) 466
Hin6I GCGC 1 cut(s) 464
HinP1I GCGC 1 cut(s) 464
HincII GTYRAC 1 cut(s) 750
HindII GTYRAC 1 cut(s) 750
HindIII AAGCTT 1 cut(s) 407
HinfI GANTC 7 cut(s) 62, 248, 329, 386, 740, 836, 1486
HpaII CCGG 2 cut(s) 684, 1347
HphI GGTGA 5 cut(s) 1041, 1076, 1317, 1399, 1454
Hpy166II GTNNAC 2 cut(s) 750, 1352
Hpy188I TCNGA 5 cut(s) 284, 793, 1121, 1171, 1428
Hpy8I GTNNAC 2 cut(s) 750, 1352
HpyAV CCTTC 3 cut(s) 351, 436, 1062
HpyCH4III ACNGT 5 cut(s) 79, 517, 653, 1016, 1387
HpyCH4IV ACGT 2 cut(s) 574, 1267
HpyCH4V TGCA 7 cut(s) 453, 634, 673, 713, 925, 1150, 1320
HpyF10VI GCNNNNNNNGC 2 cut(s) 463, 670
HpyF3I CTNAG 3 cut(s) 138, 736, 1168
HpySE526I ACGT 2 cut(s) 574, 1267
HspAI GCGC 1 cut(s) 464
Ksp22I TGATCA 1 cut(s) 1335
KspI CCGCGG 1 cut(s) 1418
Kzo9I GATC 7 cut(s) 608, 628, 730, 802, 1335, 1389, 1406
LguI GCTCTTC 2 cut(s) 875, 1148
LmnI GCTCC 1 cut(s) 967
Lsp1109I GCAGC 4 cut(s) 146, 685, 937, 985
LweI GCATC 1 cut(s) 512
MaeI CTAG 4 cut(s) 102, 1082, 1091, 1431
MaeII ACGT 2 cut(s) 574, 1267
MaeIII GTNAC 3 cut(s) 653, 757, 1442
MalI GATC 7 cut(s) 610, 630, 732, 804, 1337, 1391, 1408
MboI GATC 7 cut(s) 608, 628, 730, 802, 1335, 1389, 1406
MboII GAAGA 7 cut(s) 75, 81, 613, 892, 986, 1034, 1165
MflI RGATCY 2 cut(s) 628, 730
MhlI GDGCHC 2 cut(s) 1126, 1238
MlsI TGGCCA 1 cut(s) 162
MluCI AATT 6 cut(s) 168, 427, 913, 937, 1192, 1457
MluNI TGGCCA 1 cut(s) 162
MlyI GAGTC 4 cut(s) 242, 323, 395, 1480
MmeI TCCRAC 1 cut(s) 456
Mox20I TGGCCA 1 cut(s) 162
MroXI GAANNNNTTC 1 cut(s) 884
MscI TGGCCA 1 cut(s) 162
MseI TTAA 2 cut(s) 230, 1128
MslI CAYNNNNRTG 2 cut(s) 1292, 1337
Msp20I TGGCCA 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 1417
MspCI CTTAAG 1 cut(s) 229
MspI CCGG 2 cut(s) 684, 1347
MspR9I CCNGG 4 cut(s) 288, 684, 1347, 1440
MvaI CCWGG 2 cut(s) 288, 1440
MvnI CGCG 1 cut(s) 1417
MwoI GCNNNNNNNGC 2 cut(s) 463, 670
NciI CCSGG 2 cut(s) 684, 1347
NcoI CCATGG 2 cut(s) 1293, 1395
NdeII GATC 7 cut(s) 608, 628, 730, 802, 1335, 1389, 1406
NlaIV GGNNCC 3 cut(s) 194, 863, 1300
NmuCI GTSAC 2 cut(s) 653, 1442
NspI RCATGY 1 cut(s) 457
PaeI GCATGC 1 cut(s) 457
PagI TCATGA 2 cut(s) 1332, 1338
PceI AGGCCT 1 cut(s) 340
PciSI GCTCTTC 2 cut(s) 875, 1148
PdmI GAANNNNTTC 1 cut(s) 884
PfeI GAWTC 3 cut(s) 62, 740, 836
PkrI GCNGC 4 cut(s) 136, 675, 927, 975
PleI GAGTC 4 cut(s) 242, 323, 394, 1480
PpsI GAGTC 4 cut(s) 242, 323, 394, 1480
PpuMI RGGWCCY 2 cut(s) 193, 1114
Psp124BI GAGCTC 1 cut(s) 1126
Psp1406I AACGTT 1 cut(s) 574
Psp5II RGGWCCY 2 cut(s) 193, 1114
Psp6I CCWGG 2 cut(s) 286, 1438
PspGI CCWGG 2 cut(s) 286, 1438
PspN4I GGNNCC 3 cut(s) 194, 863, 1300
PspPI GGNCC 2 cut(s) 193, 1114
PspPPI RGGWCCY 2 cut(s) 193, 1114
PstI CTGCAG 2 cut(s) 636, 675
PsuI RGATCY 2 cut(s) 628, 730
RsaI GTAC 1 cut(s) 781
RsaNI GTAC 1 cut(s) 780
RseI CAYNNNNRTG 2 cut(s) 1292, 1337
SacI GAGCTC 1 cut(s) 1126
SacII CCGCGG 1 cut(s) 1418
SapI GCTCTTC 2 cut(s) 875, 1148
SaqAI TTAA 2 cut(s) 230, 1128
SatI GCNGC 4 cut(s) 135, 674, 926, 974
Sau3AI GATC 7 cut(s) 608, 628, 730, 802, 1335, 1389, 1406
Sau96I GGNCC 2 cut(s) 193, 1114
SchI GAGTC 4 cut(s) 242, 323, 395, 1480
ScrFI CCNGG 4 cut(s) 288, 684, 1347, 1440
SduI GDGCHC 2 cut(s) 1126, 1238
SfaNI GCATC 1 cut(s) 512
SfcI CTRYAG 4 cut(s) 12, 256, 632, 671
Sfr303I CCGCGG 1 cut(s) 1418
SgrBI CCGCGG 1 cut(s) 1418
SinI GGWCC 2 cut(s) 193, 1114
SmiMI CAYNNNNRTG 2 cut(s) 1292, 1337
SmlI CTYRAG 2 cut(s) 229, 1203
SmoI CTYRAG 2 cut(s) 229, 1203
SphI GCATGC 1 cut(s) 457
Sse9I AATT 6 cut(s) 168, 427, 913, 937, 1192, 1457
SseBI AGGCCT 1 cut(s) 340
SsiI CCGC 3 cut(s) 933, 1415, 1417
SspI AATATT 1 cut(s) 217
SspMI CTAG 4 cut(s) 102, 1082, 1091, 1431
SstI GAGCTC 1 cut(s) 1126
StuI AGGCCT 1 cut(s) 340
StyD4I CCNGG 4 cut(s) 286, 682, 1345, 1438
StyI CCWWGG 6 cut(s) 335, 368, 548, 965, 1293, 1395
TaaI ACNGT 5 cut(s) 79, 517, 653, 1016, 1387
TaiI ACGT 2 cut(s) 577, 1270
TaqI TCGA 2 cut(s) 25, 424
TaqII GACCGA 1 cut(s) 715
TasI AATT 6 cut(s) 168, 427, 913, 937, 1192, 1457
TfiI GAWTC 3 cut(s) 62, 740, 836
Tru1I TTAA 2 cut(s) 230, 1128
Tru9I TTAA 2 cut(s) 230, 1128
TscAI CASTG 4 cut(s) 82, 522, 750, 760
TseFI GTSAC 2 cut(s) 653, 1442
TseI GCWGC 4 cut(s) 134, 673, 925, 973
Tsp45I GTSAC 2 cut(s) 653, 1442
TspDTI ATGAA 7 cut(s) 75, 87, 218, 389, 510, 849, 1355
TspRI CASTG 4 cut(s) 82, 522, 750, 760
Vha464I CTTAAG 1 cut(s) 229
VpaK11BI GGWCC 2 cut(s) 193, 1114
XapI RAATTY 3 cut(s) 427, 937, 1192
XceI RCATGY 1 cut(s) 457
XmnI GAANNNNTTC 1 cut(s) 884
XspI CTAG 4 cut(s) 102, 1082, 1091, 1431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.