Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012433

Orthogroup ID

OG0004546

Physical Location & Seq

Genomic Coordinates Forward (+)

99479 .. 102649

Gene Structure 3171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12433g00110.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2481 bp

ATGTCTGCAAAGATTTTGCATTCTCTAACGGATGAGAACCGGGACCTCCATAAGCAAATTGGGTGTATGAGTGGAATTTTTCAGCTCTTTGATCGCCACCATTTCCTCTCCGGCCGGCGTATCAACGGCCAGAACCACAAGAGACTTCATCCAGGTGAGAATTGCAACCACGCAGTCGAACCAAGCACAGTGCAGAAAGCTACAGAAAAAATTCGAATAAAGGCGGTGAAAGAGAAACAACGAAACTCCACAGAATCATCGAAAACCACTGTTTCTTCTTCTTCTTCATGTTCGTCTAGCCTGTCGTGTCTTGAACATAAAAAGGCAGCTCAGCAAGAACCATCTTCGTCCAGCCAAACCATTTCCAATGACAAAGACGCTCGGGACCCATCCGTGAAACAACCACATGTTTTGATGCGCATACGCCGGGAATCCTTTGATCTGCAAGGTCTTGTCAAAGACTCGACGCACAGAGAAGCCCGTGGCATTTCAGTTAAACCTGCAGCTAAAGATGGAGTTGGTCACACATTGAAGTACATAGACTCCCCGAGGCCTTCAATAAAATCCACCAAGCCAAGGGTTTCTGGTGGTAATGAGTCATTTCAAGTTCCTGCAAAGCTTCGGGTAGCAACTTGGAGTTCCAACGAAGAGAAGGATGGTTGCGCGCGCTTCTTACCAAAAGATGCTCGGAGGTTCTCTTATGATGGAAGAGAGTCACGAGATGCATCAAAATCCACCATAAAACTCAAAGAACTCCCAAGGCTTTCTTTGGACAGTGAGGAACGTTCCATAAGGAGGGGTTGTAACCCAGAAACAAAAGGAAACTACTCCATCAAGGATATGCAGAGAGAGGACAGGAACGGCAACAAATTGCTTGACTTGCAGCATGAACCCGGAAGCGCTAAAAGACCGTCTAATGTCGTTGCAAAGTTGATGGGATTGGATCTATCAGATTCCGTGTCAACCACTGATAGTCCATTCAGGCTGGTTGATACCGACCAATCTGACAGATCTGACCCCTTCTCCAGATCATCAAGAGCAACCAATGAAAACAAGCAAGATACTTTTTCTGGGATACTCCTTGCAAATACGAAGAAAGACAGCTCACCGCAGAGGAGAGGCATTGATCCGGTCATGAAGCCCACCTCCAATTCTAAGTTTCCAATAGAAGCAGCTCCGTGGAGGCAGCCACACAGAAGCAAAGGTTCTCAACGATCAGATTTCAAGCAACAAGAAGAACCTATAAAAGCTCCAAATACATCATCTTCAGTATATGGTGAAATGGAAAAAAGGCTGGCAGATCTTGAGTTCAAAAAATCAGGAAAGGATCTCAGAGCTCTTAAGCAAATACTTGAAGCGATGCAGAAGACGAAAGGAATGACAGATACAGGAAAGGATCACGCCTCAAATTTTGCATCTCAAATAAGCAACAAAAGCATTTCTTTGGACAGCACAGTATCAGCAAGCCAGAGATATCTACAAAGTAACATATCAGTTCCTGCCACGGCCAAGGGTTCCCAATCTCCAAAGAGTTATAAATCACCCACTGTCATACTGAAACCAGCTAAACTCATTGATAAAACCCACAGCTCTGCTTCCATGGTGAATTCCATGAATGACACATTGGGTCTTCGGAAGCTTCGGACCAGTGACCCTGGTGATAACAGAAAGGGATTGGTCGACAAGAAAACAGCCAAAGATCTGACACCAAGGAACAATCACGTCAGAGATCTTTTCAATCGACAACTCCATTCCACTGATGATAATTCTAACACAAGAACTTTGAAATCTGCACAAAAACCAAAGGCATCGCAAACTATGAGTGAAGAAAAAGTCACCAGCTCAAGTAGGAGTCCAGGAGTCACGAGCCCGAAAATGCAACAGAGAAGACTTGGATTGGAGAAGCAATCTCCTCCAAACACTCCATCATTGAATTCAAGCATGACGAGAAGGCAACACACCAGGCAGTCACTAGAAGCAACCACCCCAGGTAGAAAACTTGGGCATAAGACACCCAATTTGCATCAAAGTAATGTGCAACTGAGGGAGACTAGCACCAAGACGAGAGATATGAGTCATCACGACGATTCCACTTCTCAGCAATCTGGGAGCACCATCAGCTTGGCCTCGCATACAGACACAGACGCCACAAGCATTCATCAATCAGATACGATCACAGGCACGCATTTCAACAAGCATAACCAAAAAATAAAGCACCCAGCAGTGGGGTTGATTGATGACAGGTCAATGGCAGAAACTAGGAAAGCTTCCTCCGAACAACCAAGCCCTGTCTCTGTTCTTGATTCCACATTCTATCGCGATGACTCACCATCTCCAGTGAAGAAGATATCAAGTGCCTTCAAAGACGATGAAGCACAAATTCTGGAGATAGCAGAGTATGACCCAATGAACCAAGCTCTGTTATCCAACAACACAATGCCCAGTCTTGGGGCAGAAATTGATCGATCGATAAAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008017 GO:0008092 GO:0008150 GO:0015631 GO:0022603 GO:0022604 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051510 GO:0051513 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 VARLMGL

Protein Analysis

827

Amino Acids

91.62

Weight (kDa)

9.77

Isoelectric Point (pI)

59.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46710 FvH4_6g46710 FvH4_6g46710 FvH4_6g46710
malus_domestica	MD09G1068400.v1.1 MD17G1061300.v1.1
prunus_persica	Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1
pyrus_communis	pycom12433g00110 pycom12433g00120 pycom17g06120
rosa_chinensis	RchiOBHm_Chr2g0165601
rosa_laevigata	RLG00000021542
rosa_multiflora	Rmu_co8268985.1_g000001 Rmu_co8395029.1_g000001 Rmu_sc0005425.1_g000021 Rmu_sc0035818.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085700
rosa_rugosa	Rorug02G0516300 Rorug02G0516400 Rorug02G0516400 Rorug02G0516400
rosa_samantha	Rh2AG582500 Rh2BG594600 Rh2CG564500 Rh2DG604500
rosa_wichuraiana	Rw0G016060 Rw2G048590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1536
Acc16I	TGCGCA	1 cut(s)	419
Acc36I	ACCTGC	1 cut(s)	508
AccI	GTMKAC	1 cut(s)	1680
AccII	CGCG	3 cut(s)	665, 667, 2319
AciI	CCGC	2 cut(s)	224, 1109
AclI	AACGTT	1 cut(s)	784
AclWI	GGATC	4 cut(s)	951, 1121, 1335, 1404
AcoI	YGGCCR	3 cut(s)	112, 127, 1506
AcsI	RAATTY	6 cut(s)	75, 210, 1408, 1606, 1933, 2379
AcuI	CTGAAG	1 cut(s)	1251
AcyI	GRCGYC	1 cut(s)	2145
AfaI	GTAC	1 cut(s)	536
AfeI	AGCGCT	1 cut(s)	901
AfiI	CCNNNNNNNGG	6 cut(s)	576, 795, 2224, 2225, 2447, 2448
AflII	CTTAAG	1 cut(s)	1340
AflIII	ACRYGT	1 cut(s)	406
AjiI	CACGTC	1 cut(s)	1723
AjnI	CCWGG	5 cut(s)	151, 1654, 1855, 1961, 1987
AjuI	GAANNNNNNNTTGG	2 cut(s)	1607, 1639
Alw21I	GWGCWC	2 cut(s)	1339, 2114
Alw26I	GTCTC	3 cut(s)	136, 2042, 2296
AlwI	GGATC	4 cut(s)	951, 1121, 1335, 1404
AlwNI	CAGNNNCTG	1 cut(s)	1499
Ama87I	CYCGRG	2 cut(s)	381, 547
Aor51HI	AGCGCT	1 cut(s)	901
AoxI	GGCC	5 cut(s)	112, 127, 551, 1506, 2124
ApeKI	GCWGC	5 cut(s)	326, 503, 883, 1172, 1186
ApoI	RAATTY	6 cut(s)	75, 210, 1408, 1606, 1933, 2379
ArsI	GACNNNNNNTTYG	2 cut(s)	2002, 2034
Asp700I	GAANNNNTTC	1 cut(s)	210
AspLEI	GCGC	5 cut(s)	420, 665, 667, 669, 902
AspS9I	GGNCC	3 cut(s)	43, 385, 1644
AsuC2I	CCSGG	3 cut(s)	41, 428, 894
AsuHPI	GGTGA	9 cut(s)	167, 238, 1098, 1289, 1533, 1615, 1670, 1828, 2319
AsuII	TTCGAA	1 cut(s)	214
AvaI	CYCGRG	2 cut(s)	381, 547
AvaII	GGWCC	3 cut(s)	43, 385, 1644
BanII	GRGCYC	2 cut(s)	1339, 1871
BauI	CACGAG	2 cut(s)	717, 1864
BbsI	GAAGAC	3 cut(s)	1373, 1622, 1894
Bbv12I	GWGCWC	2 cut(s)	1339, 2114
BbvI	GCAGC	5 cut(s)	338, 515, 895, 1184, 1198
BceAI	ACGGC	3 cut(s)	142, 877, 1521
BciT130I	CCWGG	5 cut(s)	153, 1656, 1857, 1963, 1989
BciVI	GTATCC	1 cut(s)	1068
BcnI	CCSGG	3 cut(s)	41, 428, 894
BcoDI	GTCTC	3 cut(s)	136, 2042, 2296
BfaI	CTAG	4 cut(s)	297, 1973, 2052, 2259
BfmI	CTRYAG	2 cut(s)	201, 501
BfoI	RGCGCY	1 cut(s)	903
BfrI	CTTAAG	1 cut(s)	1340
BfuAI	ACCTGC	1 cut(s)	508
BfuI	GTATCC	1 cut(s)	1068
BglII	AGATCT	4 cut(s)	1010, 1300, 1699, 1729
BisI	GCNGC	5 cut(s)	327, 504, 884, 1173, 1187
BlpI	GCTNAGC	1 cut(s)	330
BlsI	GCNGC	5 cut(s)	328, 505, 885, 1174, 1188
Bme1390I	CCNGG	8 cut(s)	41, 153, 428, 894, 1656, 1857, 1963, 1989
Bme18I	GGWCC	3 cut(s)	43, 385, 1644
BmeT110I	CYCGRG	2 cut(s)	381, 547
BmgBI	CACGTC	1 cut(s)	1723
BmgT120I	GGNCC	3 cut(s)	43, 385, 1644
BmiI	GGNNCC	4 cut(s)	44, 386, 387, 1516
BmrFI	CCNGG	8 cut(s)	41, 153, 428, 894, 1656, 1857, 1963, 1989
BmrI	ACTGGG	1 cut(s)	2436
BmsI	GCATC	8 cut(s)	405, 673, 712, 734, 1350, 1424, 1817, 2032
BmuI	ACTGGG	1 cut(s)	2436
BpiI	GAAGAC	3 cut(s)	1373, 1622, 1894
BpmI	CTGGAG	3 cut(s)	1009, 2319, 2405
Bpu1102I	GCTNAGC	1 cut(s)	330
Bpu14I	TTCGAA	1 cut(s)	214
BpuEI	CTTGAG	2 cut(s)	1325, 1828
BpuMI	CCSGG	3 cut(s)	41, 428, 894
Bsa29I	ATCGAT	2 cut(s)	2464, 2468
BsaHI	GRCGYC	1 cut(s)	2145
BsaWI	WCCGGW	1 cut(s)	1129
BsaXI	ACNNNNNCTCC	6 cut(s)	527, 557, 787, 817, 1007, 1037
Bsc4I	CCNNNNNNNGG	6 cut(s)	576, 795, 2224, 2225, 2447, 2448
Bse118I	RCCGGY	1 cut(s)	114
Bse1I	ACTGG	3 cut(s)	1647, 2336, 2442
BseBI	CCWGG	5 cut(s)	153, 1656, 1857, 1963, 1989
BseCI	ATCGAT	2 cut(s)	2464, 2468
BseGI	GGATG	4 cut(s)	37, 148, 389, 661
BseLI	CCNNNNNNNGG	6 cut(s)	576, 795, 2224, 2225, 2447, 2448
BseMII	CTCAG	4 cut(s)	344, 1345, 2033, 2111
BseNI	ACTGG	3 cut(s)	1647, 2336, 2442
BsePI	GCGCGC	2 cut(s)	663, 665
BseRI	GAGGAG	2 cut(s)	1129, 1902
BseX3I	CGGCCG	1 cut(s)	112
BseXI	GCAGC	5 cut(s)	338, 515, 895, 1184, 1198
BseYI	CCCAGC	1 cut(s)	2218
BsgI	GTGCAG	2 cut(s)	212, 1776
Bsh1236I	CGCG	3 cut(s)	665, 667, 2319
Bsh1285I	CGRYCG	2 cut(s)	115, 2468
BshFI	GGCC	5 cut(s)	114, 129, 553, 1508, 2126
BshVI	ATCGAT	2 cut(s)	2464, 2468
BsiEI	CGRYCG	2 cut(s)	115, 2468
BsiHKAI	GWGCWC	2 cut(s)	1339, 2114
BsiHKCI	CYCGRG	2 cut(s)	381, 547
BsiSI	CCGG	6 cut(s)	40, 111, 115, 427, 894, 1130
BslFI	GGGAC	2 cut(s)	56, 398
BslI	CCNNNNNNNGG	6 cut(s)	576, 795, 2224, 2225, 2447, 2448
BsmAI	GTCTC	3 cut(s)	136, 2042, 2296
BsmFI	GGGAC	2 cut(s)	56, 398
BsmI	GAATGC	2 cut(s)	19, 2154
BsnI	GGCC	5 cut(s)	114, 129, 553, 1508, 2126
BsoBI	CYCGRG	2 cut(s)	381, 547
Bsp119I	TTCGAA	1 cut(s)	214
Bsp1286I	GDGCHC	3 cut(s)	1339, 1871, 2114
Bsp1720I	GCTNAGC	1 cut(s)	330
Bsp19I	CCATGG	1 cut(s)	1599
Bsp68I	TCGCGA	1 cut(s)	2319
BspACI	CCGC	2 cut(s)	224, 1109
BspANI	GGCC	5 cut(s)	114, 129, 553, 1508, 2126
BspCNI	CTCAG	4 cut(s)	343, 1344, 2034, 2110
BspDI	ATCGAT	2 cut(s)	2464, 2468
BspFNI	CGCG	3 cut(s)	665, 667, 2319
BspHI	TCATGA	1 cut(s)	1134
BspLI	GGNNCC	4 cut(s)	44, 386, 387, 1516
BspMAI	CTGCAG	1 cut(s)	505
BspMI	ACCTGC	1 cut(s)	508
BspPI	GGATC	4 cut(s)	951, 1121, 1335, 1404
BspT104I	TTCGAA	1 cut(s)	214
BspTI	CTTAAG	1 cut(s)	1340
BsrFI	RCCGGY	1 cut(s)	114
BsrI	ACTGG	3 cut(s)	1647, 2336, 2442
BssAI	RCCGGY	1 cut(s)	114
BssHII	GCGCGC	2 cut(s)	663, 665
BssNI	GRCGYC	1 cut(s)	2145
BssSI	CACGAG	2 cut(s)	717, 1864
BssT1I	CCWWGG	5 cut(s)	575, 758, 1509, 1599, 1709
Bst2BI	CACGAG	2 cut(s)	717, 1864
Bst2UI	CCWGG	5 cut(s)	153, 1656, 1857, 1963, 1989
Bst4CI	ACNGT	6 cut(s)	190, 271, 776, 912, 1456, 1549
Bst6I	CTCTTC	2 cut(s)	642, 703
BstACI	GRCGYC	1 cut(s)	2145
BstAFI	CTTAAG	1 cut(s)	1340
BstBI	TTCGAA	1 cut(s)	214
BstC8I	GCNNGC	6 cut(s)	116, 665, 667, 1296, 1465, 2183
BstDEI	CTNAG	5 cut(s)	330, 1155, 1331, 2042, 2097
BstDSI	CCRYGG	4 cut(s)	481, 1178, 1503, 1599
BstF5I	GGATG	4 cut(s)	37, 148, 389, 661
BstFNI	CGCG	3 cut(s)	665, 667, 2319
BstH2I	RGCGCY	1 cut(s)	903
BstHHI	GCGC	5 cut(s)	420, 665, 667, 669, 902
BstMAI	GTCTC	3 cut(s)	136, 2042, 2296
BstMCI	CGRYCG	2 cut(s)	115, 2468
BstMWI	GCNNNNNNNGC	3 cut(s)	880, 1434, 2118
BstNI	CCWGG	5 cut(s)	153, 1656, 1857, 1963, 1989
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	8 cut(s)	39, 151, 426, 892, 1654, 1855, 1961, 1987
BstSFI	CTRYAG	2 cut(s)	201, 501
BstUI	CGCG	3 cut(s)	665, 667, 2319
BstV1I	GCAGC	5 cut(s)	338, 515, 895, 1184, 1198
BstV2I	GAAGAC	3 cut(s)	1373, 1622, 1894
BstX2I	RGATCY	6 cut(s)	943, 1010, 1300, 1327, 1699, 1729
BstXI	CCANNNNNNTGG	1 cut(s)	2122
BstYI	RGATCY	6 cut(s)	943, 1010, 1300, 1327, 1699, 1729
BstZI	CGGCCG	1 cut(s)	112
Bsu15I	ATCGAT	2 cut(s)	2464, 2468
BsuI	GTATCC	1 cut(s)	1068
BsuRI	GGCC	5 cut(s)	114, 129, 553, 1508, 2126
BsuTUI	ATCGAT	2 cut(s)	2464, 2468
BtgI	CCRYGG	4 cut(s)	481, 1178, 1503, 1599
BtgZI	GCGATG	3 cut(s)	1373, 1794, 2334
BtrI	CACGTC	1 cut(s)	1723
BtsCI	GGATG	4 cut(s)	37, 148, 389, 661
BtsI	GCAGTG	1 cut(s)	2229
BtsIMutI	CAGTG	9 cut(s)	195, 267, 781, 966, 1545, 1654, 1755, 2229, 2343
BtuMI	TCGCGA	1 cut(s)	2319
BveI	ACCTGC	1 cut(s)	508
Cac8I	GCNNGC	6 cut(s)	116, 665, 667, 1296, 1465, 2183
CaiI	CAGNNNCTG	1 cut(s)	1499
CciI	TCATGA	1 cut(s)	1134
CfoI	GCGC	5 cut(s)	420, 665, 667, 669, 902
Cfr10I	RCCGGY	1 cut(s)	114
Cfr13I	GGNCC	3 cut(s)	43, 385, 1644
ClaI	ATCGAT	2 cut(s)	2464, 2468
CseI	GACGC	3 cut(s)	386, 475, 2153
Csp6I	GTAC	1 cut(s)	535
CspCI	CAANNNNNGTGG	2 cut(s)	393, 428
CviAII	CATG	7 cut(s)	288, 407, 887, 1135, 1600, 1612, 1942
CviQI	GTAC	1 cut(s)	535
DdeI	CTNAG	5 cut(s)	330, 1155, 1331, 2042, 2097
EaeI	YGGCCR	3 cut(s)	112, 127, 1506
EagI	CGGCCG	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	642, 703
EarI	CTCTTC	2 cut(s)	642, 703
Ecl136II	GAGCTC	1 cut(s)	1337
EclXI	CGGCCG	1 cut(s)	112
Eco130I	CCWWGG	5 cut(s)	575, 758, 1509, 1599, 1709
Eco147I	AGGCCT	1 cut(s)	553
Eco24I	GRGCYC	2 cut(s)	1339, 1871
Eco32I	GATATC	2 cut(s)	1475, 2349
Eco47I	GGWCC	3 cut(s)	43, 385, 1644
Eco47III	AGCGCT	1 cut(s)	901
Eco52I	CGGCCG	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	1337
Eco57I	CTGAAG	1 cut(s)	1251
Eco88I	CYCGRG	2 cut(s)	381, 547
EcoICRI	GAGCTC	1 cut(s)	1337
EcoO109I	RGGNCCY	2 cut(s)	43, 385
EcoRI	GAATTC	2 cut(s)	1606, 1933
EcoRII	CCWGG	5 cut(s)	151, 1654, 1855, 1961, 1987
EcoRV	GATATC	2 cut(s)	1475, 2349
EcoT14I	CCWWGG	5 cut(s)	575, 758, 1509, 1599, 1709
EcoT22I	ATGCAT	1 cut(s)	727
EcoT38I	GRGCYC	2 cut(s)	1339, 1871
ErhI	CCWWGG	5 cut(s)	575, 758, 1509, 1599, 1709
FaeI	CATG	7 cut(s)	291, 410, 890, 1138, 1603, 1615, 1945
FalI	AAGNNNNNCTT	4 cut(s)	751, 783, 1426, 1458
FaqI	GGGAC	2 cut(s)	56, 398
FatI	CATG	7 cut(s)	287, 406, 886, 1134, 1599, 1611, 1941
FblI	GTMKAC	1 cut(s)	1680
Fnu4HI	GCNGC	5 cut(s)	327, 504, 884, 1173, 1187
FokI	GGATG	4 cut(s)	44, 135, 376, 668
FriOI	GRGCYC	2 cut(s)	1339, 1871
Fsp4HI	GCNGC	5 cut(s)	327, 504, 884, 1173, 1187
FspAI	RTGCGCAY	1 cut(s)	419
FspBI	CTAG	4 cut(s)	297, 1973, 2052, 2259
FspI	TGCGCA	1 cut(s)	419
GlaI	GCGC	5 cut(s)	419, 664, 666, 668, 901
GluI	GCNGC	5 cut(s)	327, 504, 884, 1173, 1187
GsaI	CCCAGC	1 cut(s)	2222
GsuI	CTGGAG	3 cut(s)	1009, 2319, 2405
HaeII	RGCGCY	1 cut(s)	903
HaeIII	GGCC	5 cut(s)	114, 129, 553, 1508, 2126
HapII	CCGG	6 cut(s)	40, 111, 115, 427, 894, 1130
HgaI	GACGC	3 cut(s)	386, 475, 2153
HhaI	GCGC	5 cut(s)	420, 665, 667, 669, 902
Hin1I	GRCGYC	1 cut(s)	2145
Hin1II	CATG	7 cut(s)	291, 410, 890, 1138, 1603, 1615, 1945
Hin6I	GCGC	5 cut(s)	418, 663, 665, 667, 900
HinP1I	GCGC	5 cut(s)	418, 663, 665, 667, 900
HincII	GTYRAC	2 cut(s)	963, 1681
HindII	GTYRAC	2 cut(s)	963, 1681
HindIII	AAGCTT	3 cut(s)	617, 1637, 2265
HpaII	CCGG	6 cut(s)	40, 111, 115, 427, 894, 1130
HphI	GGTGA	9 cut(s)	167, 238, 1098, 1289, 1533, 1615, 1670, 1828, 2319
Hpy166II	GTNNAC	2 cut(s)	963, 1681
Hpy8I	GTNNAC	2 cut(s)	963, 1681
Hpy99I	CGWCG	2 cut(s)	469, 2087
HpyAV	CCTTC	5 cut(s)	564, 646, 1030, 1944, 2368
HpyCH4III	ACNGT	6 cut(s)	190, 271, 776, 912, 1456, 1549
HpyCH4IV	ACGT	2 cut(s)	784, 1722
HpyF10VI	GCNNNNNNNGC	3 cut(s)	880, 1434, 2118
HpyF3I	CTNAG	5 cut(s)	330, 1155, 1331, 2042, 2097
HpySE526I	ACGT	2 cut(s)	784, 1722
Hsp92I	GRCGYC	1 cut(s)	2145
Hsp92II	CATG	7 cut(s)	291, 410, 890, 1138, 1603, 1615, 1945
HspAI	GCGC	5 cut(s)	418, 663, 665, 667, 900
KflI	GGGWCCC	1 cut(s)	385
KroI	GCCGGC	1 cut(s)	114
KroNI	GCCGGC	1 cut(s)	116
LmnI	GCTCC	3 cut(s)	1180, 1255, 2109
Lsp1109I	GCAGC	5 cut(s)	338, 515, 895, 1184, 1198
LweI	GCATC	8 cut(s)	405, 673, 712, 734, 1350, 1424, 1817, 2032
MaeI	CTAG	4 cut(s)	297, 1973, 2052, 2259
MaeII	ACGT	2 cut(s)	784, 1722
MaeIII	GTNAC	8 cut(s)	521, 714, 803, 1484, 1649, 1834, 1861, 1968
MflI	RGATCY	6 cut(s)	943, 1010, 1300, 1327, 1699, 1729
MhlI	GDGCHC	3 cut(s)	1339, 1871, 2114
MlyI	GAGTC	8 cut(s)	455, 536, 605, 722, 1861, 1869, 2083, 2318
MmeI	TCCRAC	2 cut(s)	666, 2451
Mph1103I	ATGCAT	1 cut(s)	727
MroNI	GCCGGC	1 cut(s)	114
MroXI	GAANNNNTTC	1 cut(s)	210
MseI	TTAA	2 cut(s)	495, 1341
MslI	CAYNNNNRTG	1 cut(s)	153
MspCI	CTTAAG	1 cut(s)	1340
MspI	CCGG	6 cut(s)	40, 111, 115, 427, 894, 1130
MspR9I	CCNGG	8 cut(s)	41, 153, 428, 894, 1656, 1857, 1963, 1989
Mva1269I	GAATGC	2 cut(s)	19, 2154
MvaI	CCWGG	5 cut(s)	153, 1656, 1857, 1963, 1989
MvnI	CGCG	3 cut(s)	665, 667, 2319
MwoI	GCNNNNNNNGC	3 cut(s)	880, 1434, 2118
NaeI	GCCGGC	1 cut(s)	116
NciI	CCSGG	3 cut(s)	41, 428, 894
NcoI	CCATGG	1 cut(s)	1599
NgoMIV	GCCGGC	1 cut(s)	114
NlaIII	CATG	7 cut(s)	291, 410, 890, 1138, 1603, 1615, 1945
NlaIV	GGNNCC	4 cut(s)	44, 386, 387, 1516
NmuCI	GTSAC	6 cut(s)	521, 714, 1649, 1834, 1861, 1968
NruI	TCGCGA	1 cut(s)	2319
NsbI	TGCGCA	1 cut(s)	419
NsiI	ATGCAT	1 cut(s)	727
NspI	RCATGY	1 cut(s)	410
NspV	TTCGAA	1 cut(s)	214
PagI	TCATGA	1 cut(s)	1134
PauI	GCGCGC	2 cut(s)	663, 665
PceI	AGGCCT	1 cut(s)	553
PciI	ACATGT	1 cut(s)	406
PctI	GAATGC	2 cut(s)	19, 2154
PdiI	GCCGGC	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	210
PfeI	GAWTC	5 cut(s)	254, 431, 953, 2087, 2303
PfoI	TCCNGGA	1 cut(s)	1855
PkrI	GCNGC	5 cut(s)	328, 505, 885, 1174, 1188
Ple19I	CGATCG	1 cut(s)	2468
PleI	GAGTC	8 cut(s)	455, 536, 604, 721, 1860, 1868, 2082, 2318
PpsI	GAGTC	8 cut(s)	455, 536, 604, 721, 1860, 1868, 2082, 2318
PpuMI	RGGWCCY	2 cut(s)	43, 385
PscI	ACATGT	1 cut(s)	406
PsiI	TTATAA	1 cut(s)	1536
Psp124BI	GAGCTC	1 cut(s)	1339
Psp1406I	AACGTT	1 cut(s)	784
Psp5II	RGGWCCY	2 cut(s)	43, 385
Psp6I	CCWGG	5 cut(s)	151, 1654, 1855, 1961, 1987
PspFI	CCCAGC	1 cut(s)	2218
PspGI	CCWGG	5 cut(s)	151, 1654, 1855, 1961, 1987
PspN4I	GGNNCC	4 cut(s)	44, 386, 387, 1516
PspPI	GGNCC	3 cut(s)	43, 385, 1644
PspPPI	RGGWCCY	2 cut(s)	43, 385
PstI	CTGCAG	1 cut(s)	505
PstNI	CAGNNNCTG	1 cut(s)	1499
PsuI	RGATCY	6 cut(s)	943, 1010, 1300, 1327, 1699, 1729
PteI	GCGCGC	2 cut(s)	663, 665
PvuI	CGATCG	1 cut(s)	2468
RruI	TCGCGA	1 cut(s)	2319
RsaI	GTAC	1 cut(s)	536
RsaNI	GTAC	1 cut(s)	535
RseI	CAYNNNNRTG	1 cut(s)	153
SacI	GAGCTC	1 cut(s)	1339
SalI	GTCGAC	1 cut(s)	1679
SaqAI	TTAA	2 cut(s)	495, 1341
SatI	GCNGC	5 cut(s)	327, 504, 884, 1173, 1187
Sau96I	GGNCC	3 cut(s)	43, 385, 1644
SchI	GAGTC	8 cut(s)	455, 536, 605, 722, 1861, 1869, 2083, 2318
ScrFI	CCNGG	8 cut(s)	41, 153, 428, 894, 1656, 1857, 1963, 1989
SduI	GDGCHC	3 cut(s)	1339, 1871, 2114
SfaNI	GCATC	8 cut(s)	405, 673, 712, 734, 1350, 1424, 1817, 2032
SfcI	CTRYAG	2 cut(s)	201, 501
SfuI	TTCGAA	1 cut(s)	214
SinI	GGWCC	3 cut(s)	43, 385, 1644
SmiMI	CAYNNNNRTG	1 cut(s)	153
SmlI	CTYRAG	3 cut(s)	1304, 1340, 1843
SmoI	CTYRAG	3 cut(s)	1304, 1340, 1843
SseBI	AGGCCT	1 cut(s)	553
SsiI	CCGC	2 cut(s)	224, 1109
SspMI	CTAG	4 cut(s)	297, 1973, 2052, 2259
SstI	GAGCTC	1 cut(s)	1339
StuI	AGGCCT	1 cut(s)	553
StyD4I	CCNGG	8 cut(s)	39, 151, 426, 892, 1654, 1855, 1961, 1987
StyI	CCWWGG	5 cut(s)	575, 758, 1509, 1599, 1709
TaaI	ACNGT	6 cut(s)	190, 271, 776, 912, 1456, 1549
TaiI	ACGT	2 cut(s)	787, 1725
TaqI	TCGA	8 cut(s)	177, 214, 260, 464, 1680, 1741, 2464, 2468
TatI	WGTACW	1 cut(s)	534
TfiI	GAWTC	5 cut(s)	254, 431, 953, 2087, 2303
Tru1I	TTAA	2 cut(s)	495, 1341
Tru9I	TTAA	2 cut(s)	495, 1341
TscAI	CASTG	9 cut(s)	195, 274, 781, 973, 1552, 1654, 1762, 2229, 2343
TseFI	GTSAC	6 cut(s)	521, 714, 1649, 1834, 1861, 1968
TseI	GCWGC	5 cut(s)	326, 503, 883, 1172, 1186
Tsp45I	GTSAC	6 cut(s)	521, 714, 1649, 1834, 1861, 1968
TspDTI	ATGAA	9 cut(s)	137, 276, 903, 1062, 1151, 1628, 2147, 2385, 2423
TspGWI	ACGGA	4 cut(s)	44, 382, 946, 1167
TspRI	CASTG	9 cut(s)	195, 274, 781, 973, 1552, 1654, 1762, 2229, 2343
Vha464I	CTTAAG	1 cut(s)	1340
VpaK11BI	GGWCC	3 cut(s)	43, 385, 1644
XapI	RAATTY	6 cut(s)	75, 210, 1408, 1606, 1933, 2379
XceI	RCATGY	1 cut(s)	410
XcmI	CCANNNNNNNNNTGG	1 cut(s)	56
XmiI	GTMKAC	1 cut(s)	1680
XmnI	GAANNNNTTC	1 cut(s)	210
XspI	CTAG	4 cut(s)	297, 1973, 2052, 2259
Zsp2I	ATGCAT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.