Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004546

Physical Location & Seq

Genomic Coordinates Forward (+)

24200302 .. 24206004

Gene Structure 5703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G252400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3192 bp

ATGTCTGCAAAGATTTTGCACTCTCTAACAGATGAAAGCCCAGATTTCCATAAGCAAATTGGGTGCATGAGTGGAATTTTTCAGCTCTTTGATCGCCACCATTTCCTCGCCGGCCGGCGTGTCAATGGCAACAGCCACAAGAGACTTCCTCCAGGAGAGAATGGCAACCACGCAGTAGAGTCCAAGAACTCATTGCAGAAAGCTACAGATAAAAATCGAACAAAGGTGGTGAAAGAGAAACACAGAAACTCCACAGAATCATCAAGAACTACTGTTTCTTCTTCTTCTTGTTCATCTAGCTTCTCATCCCTTGAATATAAAAAAGCAGCTGAGCAAGAACCATCTTTGTCCAGCCAAACCATTTCAAATGAGGAACACACTCGGGACCTATCCATGAACCAACCAAATGCTTCAATGCACCTGCGCCGGCAATCCTTTGATATGCAAGATCTTGTCAAAGACTCGACCTACAGAGAAGCCCGAGGCATTTCAGTTAAACCTGCCGGTAAAGATGGGGTTGGTCATACATTGAAATACATAGACTCTCCCAGGCCTTCATCACAATCAAAATTTGTAAGGCCAAGGGTTTCTGGCGTTAATGACTCATTTCAAGCTCCTGCTAAGCTTCGGCAAGCACCTTGGAGTTCCAATGAAGAGAAGGATGGTTGCATGCGCTTGGTACCAAAAGATGCTAGGAGGTTCTCTTATGATGGAAGAGAAACGCGAGATACATCAAAATCCACCATAAAACTGAAAGAACTCCCAAGGCTTTCTTTGGACAGCAAAGAACGTTCCATAAGGAGGGGTTGTAATCCAGAAATAAAATCAAACTACTTCTGCAAGGATCTGCAGAGGGAGGATGGGAACTGCAATAAAGTGCTTGACCTGCAGCTTGAACCTGGAAGTTCTAACAGACCATCTAATGTGGTTGCAAAGTTGATGGGACTGGATCTGTCAGATTCAGTGTCAACCACTGTTAGTCCATTAAGGTTGATTAATACCTGCATATCTGATAAATCAGACCCCTTCTCCAGATCTTCAAGAGCAACCAACGAAAACAAGCCAGATCTTTTGTCTGGGGTATTCCTCGGGAAAACACAGAAAGACTTCACCTCCCCCAAGAGGAGTACTGATTCAGTCATGAAGCCGGCCTCAAATTCTAAGTTTCCAATAGAAACAGCTCCTTGGAGGCAGCCCCATGGAAGCAAAGGTTCTCAGCGATCAGTTTCCAAGTATCAAGAAGAACCTATAAAAACCCCAAAATCAGCATCTTCAGTATATGGTGAAATGGAGAAAAGGCTAGCAAATCTTGAGTTTAAAAAATCAGGAAAGGATCTCAGAGCTCTGAAGCAAATACTTGAAGCAATGCAGAAAACTAAAGAAATGTTAGATGACAGAAAGGATCAAGCTTCAAATGTTGCATCTCAAATAAGCAACAAAAGCATTTTTTCTGACAGCAGAGAATCAGCAAGCCAGAGAAATCTACAAAGCAACATGTCAGTTCCTGCCAAAGCCAAGGGTTCCCAATCTCCAAAGAGTCATAAGTCACCGATCATCATGAAACCAGCTAAACTCATCGAGAAAACCCACAGCTCTGCTTCCACAGTGAATTCCATGGACGACACATTAGGTCTTCGGAGGCTTCGAACTAGCGACCCTGGTGATAATGGAAAAGGATTGGTTGACAAAAAACCAGCCAAAGATCTGACTCCAAAGACCAATCATATCAAAGATCCTTTCAATCGACGCCTTCGTTCCACTGATAATAATTCTAACACAAGAACTGTGAAACCCCTACAGAAACCCAAGGTGTCCCAAAATATGAGGGAAGCAATCCCCAGCAGCTCAAGTAGGAGTTCAGGAATCACAAGCCCAAGACTGCAACAGAGAAGACTTGGATTGGAGAAGCAATCTCCTCCAAGCACTCCATCATCAAATTCAAGCATGACCAGAAGGGAACACACTAGGCAGTCATTTGAAGCAAACACCCCAGGTAAAAAACTTGAGCAAAAGTCTCCCAGTTTGCGTCAAAGTAATGCGCAATTGAGGGAGACTAGCACCAACACGAGAGATATGAGTCATCGAGATGATGCCACTTCTCAGCAATCTGAGAGTAACATCAGCTGGGCCTCACATACAGACACAGAAGTCACAATCATTCATCAATCAGATAGGACAAAACACATGCACTTCAACCAGCATAGCCAAAAACAAAAGAGCCCAGCAGTGGGGTTGAGTGATGATAGGTCAATGGGAGAACCTGGGAAAGCTTCCTCCGAACAACCAAGTCCTGTCTCTGTTCTTGATTCTACATTCTACCGGGATGACTCGCCATCTCCAGTGAAGAAGATATCAAATTCCTTTAAAGACGATGAAGCACAAAATCTTGATGTAGTGGAGTATGACCCCATGGACATAGCTCTGTTATCACACAACACGATGCCCAGTCTTGGGGTCAAAATTGATCATACAATGTTAGAGAACCTGAAGCACCTGATTCAGAATCATGGACGCATGAGCAGCACACATGGGGAGTCCATCCTTGGTCCTCTCTGTGACAGCACAAATCCAGACCACATGTACATTTCAGATATATTGCTGGCATCAGGTATTCTAAGGTATCTTAAATCTGCCTGGACAACCATTGAGCTCGACACATTTGACCACCTGATCAACCCTCATTTGTTCCTTGCACTGGAAGAAATCAGGACAAATACAAAACCTTTTGATGATGGAAAAATATGCAAAGCAATTCTCCAATCCAAACCTGACGATAAAATTCAAAGAAAACTAGTATTTGATGTGGTTAATGAATTTCTAATTCAAAAACTAGTGGTGGAAGACTCTTTCAAGCAGTGGTTCTCACCACACAAGCTTGCAGAAGGGAAACCAAGAGGCCAGCAGCTTTTCAGAGAATTATGTTCAGAGGTTGATCAGCTACAAAGAAACAATTTGAATGGCAGCCTAGATGACGAGGATGATAGTTTGAGAAACATCTTGTTGGAGGATTTCATGGATCAGGCAAAGAATTGGACAGAGTGTGACAGTGAAATTCCAGGTGTAGTGTTGGATGTTGAGCGGTTGATATTTAAGGATTTGATAACTGAAATTGTGAGTGATGATGCAGTTGGCCTGCATCGTTGGTCTGGTGGGCATTGCAGGCAACTGTTTTCTGAAAGGGGGCTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008017 GO:0008092 GO:0008150 GO:0015631 GO:0022603 GO:0022604 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051510 GO:0051513 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 VARLMGL

Protein Analysis

1064

Amino Acids

119.26

Weight (kDa)

9.25

Isoelectric Point (pI)

59.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46710 FvH4_6g46710 FvH4_6g46710 FvH4_6g46710
malus_domestica	MD09G1068400.v1.1 MD17G1061300.v1.1
prunus_persica	Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1
pyrus_communis	pycom12433g00110 pycom12433g00120 pycom17g06120
rosa_chinensis	RchiOBHm_Chr2g0165601
rosa_laevigata	RLG00000021542
rosa_multiflora	Rmu_co8268985.1_g000001 Rmu_co8395029.1_g000001 Rmu_sc0005425.1_g000021 Rmu_sc0035818.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085700
rosa_rugosa	Rorug02G0516300 Rorug02G0516400 Rorug02G0516400 Rorug02G0516400
rosa_samantha	Rh2AG582500 Rh2BG594600 Rh2CG564500 Rh2DG604500
rosa_wichuraiana	Rw0G016060 Rw2G048590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	429
AasI	GACNNNNNNGTC	1 cut(s)	2147
Acc16I	TGCGCA	1 cut(s)	2040
Acc36I	ACCTGC	4 cut(s)	429, 508, 894, 1010
Acc65I	GGTACC	1 cut(s)	679
AccB1I	GGYRCC	1 cut(s)	679
AccBSI	CCGCTC	1 cut(s)	3079
AccII	CGCG	1 cut(s)	724
AciI	CCGC	1 cut(s)	3079
AclI	AACGTT	1 cut(s)	790
AclWI	GGATC	6 cut(s)	852, 957, 1341, 1410, 1727, 3024
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	9 cut(s)	75, 569, 1156, 1609, 1936, 2356, 2778, 2813, 3051
AcuI	CTGAAG	3 cut(s)	1257, 1367, 2507
AcyI	GRCGYC	1 cut(s)	1747
AfaI	GTAC	3 cut(s)	681, 1129, 2582
AfiI	CCNNNNNNNGG	7 cut(s)	801, 1122, 2227, 2228, 2450, 2451, 2695
AflIII	ACRYGT	2 cut(s)	1494, 2577
AhlI	ACTAGT	2 cut(s)	2791, 2830
AjnI	CCWGG	8 cut(s)	151, 548, 898, 1657, 1990, 2260, 2633, 3055
Alw21I	GWGCWC	2 cut(s)	1345, 2652
Alw26I	GTCTC	4 cut(s)	136, 2019, 2045, 2299
AlwI	GGATC	6 cut(s)	852, 957, 1341, 1410, 1727, 3024
AlwNI	CAGNNNCTG	1 cut(s)	1505
Ama87I	CYCGRG	3 cut(s)	381, 480, 1088
AoxI	GGCC	7 cut(s)	112, 551, 578, 1149, 2127, 2896, 3130
ApeKI	GCWGC	7 cut(s)	326, 889, 1192, 1842, 2520, 2902, 2961
ApoI	RAATTY	9 cut(s)	75, 569, 1156, 1609, 1936, 2356, 2778, 2813, 3051
AseI	ATTAAT	1 cut(s)	996
Asp700I	GAANNNNTTC	1 cut(s)	1106
Asp718I	GGTACC	1 cut(s)	679
AspLEI	GCGC	3 cut(s)	426, 675, 2041
AspS9I	GGNCC	3 cut(s)	385, 2127, 2546
AsuC2I	CCSGG	1 cut(s)	2321
AsuHPI	GGTGA	6 cut(s)	241, 1102, 1295, 1539, 1673, 2856
AsuII	TTCGAA	1 cut(s)	1645
AsuNHI	GCTAGC	1 cut(s)	1300
AvaI	CYCGRG	3 cut(s)	381, 480, 1088
AvaII	GGWCC	2 cut(s)	385, 2546
BanI	GGYRCC	1 cut(s)	679
BanII	GRGCYC	3 cut(s)	1345, 2222, 2652
BauI	CACGAG	1 cut(s)	2065
BbsI	GAAGAC	3 cut(s)	1625, 1897, 2847
Bbv12I	GWGCWC	2 cut(s)	1345, 2652
BbvI	GCAGC	7 cut(s)	338, 901, 1204, 1854, 2532, 2914, 2973
BciT130I	CCWGG	8 cut(s)	153, 550, 900, 1659, 1992, 2262, 2635, 3057
BclI	TGATCA	3 cut(s)	2464, 2670, 2932
BcnI	CCSGG	1 cut(s)	2321
BcoDI	GTCTC	4 cut(s)	136, 2019, 2045, 2299
BcuI	ACTAGT	2 cut(s)	2791, 2830
BfaI	CTAG	9 cut(s)	297, 693, 1301, 1650, 1965, 2055, 2792, 2831, 2966
BfmI	CTRYAG	5 cut(s)	204, 469, 848, 887, 1796
BfuAI	ACCTGC	4 cut(s)	429, 508, 894, 1010
BglII	AGATCT	4 cut(s)	448, 1034, 1066, 1702
BisI	GCNGC	7 cut(s)	327, 890, 1193, 1843, 2521, 2903, 2962
BlpI	GCTNAGC	2 cut(s)	330, 621
BlsI	GCNGC	7 cut(s)	328, 891, 1194, 1844, 2522, 2904, 2963
BmcAI	AGTACT	1 cut(s)	1129
Bme1390I	CCNGG	9 cut(s)	153, 550, 900, 1659, 1992, 2262, 2321, 2635, 3057
Bme18I	GGWCC	2 cut(s)	385, 2546
BmeT110I	CYCGRG	3 cut(s)	381, 480, 1088
BmgT120I	GGNCC	3 cut(s)	385, 2127, 2546
BmiI	GGNNCC	3 cut(s)	386, 681, 1522
BmrFI	CCNGG	9 cut(s)	153, 550, 900, 1659, 1992, 2262, 2321, 2635, 3057
BmrI	ACTGGG	2 cut(s)	2013, 2439
BmsI	GCATC	8 cut(s)	679, 1277, 1430, 2080, 2430, 2612, 3112, 3145
BmtI	GCTAGC	1 cut(s)	1304
BmuI	ACTGGG	2 cut(s)	2013, 2439
BpiI	GAAGAC	3 cut(s)	1625, 1897, 2847
BplI	GAGNNNNNCTC	2 cut(s)	133, 165
BpmI	CTGGAG	3 cut(s)	135, 1015, 2322
Bpu1102I	GCTNAGC	2 cut(s)	330, 621
Bpu14I	TTCGAA	1 cut(s)	1645
BpuEI	CTTGAG	3 cut(s)	1331, 1831, 2024
BpuMI	CCSGG	1 cut(s)	2321
BsaBI	GATNNNNATC	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	1747
BsaXI	ACNNNNNCTCC	8 cut(s)	233, 263, 793, 823, 1013, 1043, 1097, 1127
Bsc4I	CCNNNNNNNGG	7 cut(s)	801, 1122, 2227, 2228, 2450, 2451, 2695
Bse118I	RCCGGY	5 cut(s)	110, 114, 426, 503, 1147
Bse1I	ACTGG	5 cut(s)	951, 2019, 2339, 2445, 2700
Bse3DI	GCAATG	3 cut(s)	191, 1371, 3154
Bse8I	GATNNNNATC	1 cut(s)	213
BseBI	CCWGG	8 cut(s)	153, 550, 900, 1659, 1992, 2262, 2635, 3057
BseGI	GGATG	7 cut(s)	305, 667, 865, 2329, 2538, 2983, 3076
BseJI	GATNNNNATC	1 cut(s)	213
BseLI	CCNNNNNNNGG	7 cut(s)	801, 1122, 2227, 2228, 2450, 2451, 2695
BseMI	GCAATG	3 cut(s)	191, 1371, 3154
BseMII	CTCAG	5 cut(s)	321, 1229, 1351, 2100, 2114
BseNI	ACTGG	5 cut(s)	951, 2019, 2339, 2445, 2700
BseRI	GAGGAG	2 cut(s)	1138, 1905
BseX3I	CGGCCG	1 cut(s)	112
BseXI	GCAGC	7 cut(s)	338, 901, 1204, 1854, 2532, 2914, 2973
BseYI	CCCAGC	3 cut(s)	1838, 2124, 2221
Bsh1236I	CGCG	1 cut(s)	724
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	7 cut(s)	114, 553, 580, 1151, 2129, 2898, 3132
BshNI	GGYRCC	1 cut(s)	679
BsiEI	CGRYCG	1 cut(s)	115
BsiHKAI	GWGCWC	2 cut(s)	1345, 2652
BsiHKCI	CYCGRG	3 cut(s)	381, 480, 1088
BsiSI	CCGG	6 cut(s)	111, 115, 427, 504, 1148, 2320
BslFI	GGGAC	3 cut(s)	398, 957, 1798
BslI	CCNNNNNNNGG	7 cut(s)	801, 1122, 2227, 2228, 2450, 2451, 2695
BsmAI	GTCTC	4 cut(s)	136, 2019, 2045, 2299
BsmFI	GGGAC	3 cut(s)	398, 957, 1798
BsnI	GGCC	7 cut(s)	114, 553, 580, 1151, 2129, 2898, 3132
BsoBI	CYCGRG	3 cut(s)	381, 480, 1088
Bsp119I	TTCGAA	1 cut(s)	1645
Bsp1286I	GDGCHC	3 cut(s)	1345, 2222, 2652
Bsp1407I	TGTACA	1 cut(s)	2580
Bsp1720I	GCTNAGC	2 cut(s)	330, 621
Bsp19I	CCATGG	3 cut(s)	1198, 1614, 2409
BspACI	CCGC	1 cut(s)	3079
BspANI	GGCC	7 cut(s)	114, 553, 580, 1151, 2129, 2898, 3132
BspCNI	CTCAG	5 cut(s)	322, 1228, 1350, 2101, 2113
BspFNI	CGCG	1 cut(s)	724
BspHI	TCATGA	2 cut(s)	1140, 1557
BspLI	GGNNCC	3 cut(s)	386, 681, 1522
BspMAI	CTGCAG	2 cut(s)	852, 891
BspMI	ACCTGC	4 cut(s)	429, 508, 894, 1010
BspOI	GCTAGC	1 cut(s)	1304
BspPI	GGATC	6 cut(s)	852, 957, 1341, 1410, 1727, 3024
BspT104I	TTCGAA	1 cut(s)	1645
BspT107I	GGYRCC	1 cut(s)	679
BsrBI	CCGCTC	1 cut(s)	3079
BsrDI	GCAATG	3 cut(s)	191, 1371, 3154
BsrFI	RCCGGY	5 cut(s)	110, 114, 426, 503, 1147
BsrGI	TGTACA	1 cut(s)	2580
BsrI	ACTGG	5 cut(s)	951, 2019, 2339, 2445, 2700
BssAI	RCCGGY	5 cut(s)	110, 114, 426, 503, 1147
BssNI	GRCGYC	1 cut(s)	1747
BssSI	CACGAG	1 cut(s)	2065
Bst2BI	CACGAG	1 cut(s)	2065
Bst2UI	CCWGG	8 cut(s)	153, 550, 900, 1659, 1992, 2262, 2635, 3057
Bst4CI	ACNGT	6 cut(s)	274, 976, 1606, 1786, 3047, 3168
Bst6I	CTCTTC	2 cut(s)	648, 709
BstACI	GRCGYC	1 cut(s)	1747
BstAUI	TGTACA	1 cut(s)	2580
BstBI	TTCGAA	1 cut(s)	1645
BstDEI	CTNAG	8 cut(s)	330, 621, 1161, 1215, 1337, 2100, 2109, 2615
BstDSI	CCRYGG	3 cut(s)	1198, 1614, 2409
BstF5I	GGATG	7 cut(s)	305, 667, 865, 2329, 2538, 2983, 3076
BstFNI	CGCG	1 cut(s)	724
BstHHI	GCGC	3 cut(s)	426, 675, 2041
BstMAI	GTCTC	4 cut(s)	136, 2019, 2045, 2299
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	4 cut(s)	886, 1440, 2520, 3160
BstNI	CCWGG	8 cut(s)	153, 550, 900, 1659, 1992, 2262, 2635, 3057
BstNSI	RCATGY	4 cut(s)	673, 1498, 2188, 2581
BstSCI	CCNGG	9 cut(s)	151, 548, 898, 1657, 1990, 2260, 2319, 2633, 3055
BstSFI	CTRYAG	5 cut(s)	204, 469, 848, 887, 1796
BstUI	CGCG	1 cut(s)	724
BstV1I	GCAGC	7 cut(s)	338, 901, 1204, 1854, 2532, 2914, 2973
BstV2I	GAAGAC	3 cut(s)	1625, 1897, 2847
BstX2I	RGATCY	8 cut(s)	448, 844, 949, 1034, 1066, 1333, 1702, 1732
BstYI	RGATCY	8 cut(s)	448, 844, 949, 1034, 1066, 1333, 1702, 1732
BstZI	CGGCCG	1 cut(s)	112
BsuRI	GGCC	7 cut(s)	114, 553, 580, 1151, 2129, 2898, 3132
BtgI	CCRYGG	3 cut(s)	1198, 1614, 2409
BtsCI	GGATG	7 cut(s)	305, 667, 865, 2329, 2538, 2983, 3076
BtsI	GCAGTG	2 cut(s)	2232, 2861
BtsIMutI	CAGTG	9 cut(s)	969, 972, 1611, 1758, 2232, 2346, 2693, 2861, 3052
BveI	ACCTGC	4 cut(s)	429, 508, 894, 1010
CaiI	CAGNNNCTG	1 cut(s)	1505
CciI	TCATGA	2 cut(s)	1140, 1557
CfoI	GCGC	3 cut(s)	426, 675, 2041
Cfr10I	RCCGGY	5 cut(s)	110, 114, 426, 503, 1147
Cfr13I	GGNCC	3 cut(s)	385, 2127, 2546
CseI	GACGC	3 cut(s)	1755, 2015, 2520
Csp6I	GTAC	3 cut(s)	680, 1128, 2581
CviQI	GTAC	3 cut(s)	680, 1128, 2581
DdeI	CTNAG	8 cut(s)	330, 621, 1161, 1215, 1337, 2100, 2109, 2615
DraI	TTTAAA	2 cut(s)	1318, 2365
DrdI	GACNNNNNNGTC	1 cut(s)	2147
DseDI	GACNNNNNNGTC	1 cut(s)	2147
EaeI	YGGCCR	1 cut(s)	112
EagI	CGGCCG	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	648, 709
EarI	CTCTTC	2 cut(s)	648, 709
Ecl136II	GAGCTC	2 cut(s)	1343, 2650
EclXI	CGGCCG	1 cut(s)	112
Eco147I	AGGCCT	1 cut(s)	553
Eco24I	GRGCYC	3 cut(s)	1345, 2222, 2652
Eco32I	GATATC	1 cut(s)	2352
Eco47I	GGWCC	2 cut(s)	385, 2546
Eco52I	CGGCCG	1 cut(s)	112
Eco53kI	GAGCTC	2 cut(s)	1343, 2650
Eco57I	CTGAAG	3 cut(s)	1257, 1367, 2507
Eco88I	CYCGRG	3 cut(s)	381, 480, 1088
EcoICRI	GAGCTC	2 cut(s)	1343, 2650
EcoO109I	RGGNCCY	1 cut(s)	385
EcoRI	GAATTC	1 cut(s)	1609
EcoRII	CCWGG	8 cut(s)	151, 548, 898, 1657, 1990, 2260, 2633, 3055
EcoRV	GATATC	1 cut(s)	2352
EcoT38I	GRGCYC	3 cut(s)	1345, 2222, 2652
FalI	AAGNNNNNCTT	2 cut(s)	757, 789
FaqI	GGGAC	3 cut(s)	398, 957, 1798
FbaI	TGATCA	3 cut(s)	2464, 2670, 2932
Fnu4HI	GCNGC	7 cut(s)	327, 890, 1193, 1843, 2521, 2903, 2962
FokI	GGATG	7 cut(s)	292, 674, 872, 2336, 2525, 2990, 3083
FriOI	GRGCYC	3 cut(s)	1345, 2222, 2652
Fsp4HI	GCNGC	7 cut(s)	327, 890, 1193, 1843, 2521, 2903, 2962
FspBI	CTAG	9 cut(s)	297, 693, 1301, 1650, 1965, 2055, 2792, 2831, 2966
FspI	TGCGCA	1 cut(s)	2040
GlaI	GCGC	3 cut(s)	425, 674, 2040
GluI	GCNGC	7 cut(s)	327, 890, 1193, 1843, 2521, 2903, 2962
GsaI	CCCAGC	3 cut(s)	1842, 2128, 2225
GsuI	CTGGAG	3 cut(s)	135, 1015, 2322
HaeIII	GGCC	7 cut(s)	114, 553, 580, 1151, 2129, 2898, 3132
HapII	CCGG	6 cut(s)	111, 115, 427, 504, 1148, 2320
HgaI	GACGC	3 cut(s)	1755, 2015, 2520
HhaI	GCGC	3 cut(s)	426, 675, 2041
Hin1I	GRCGYC	1 cut(s)	1747
Hin6I	GCGC	3 cut(s)	424, 673, 2039
HinP1I	GCGC	3 cut(s)	424, 673, 2039
HincII	GTYRAC	2 cut(s)	969, 1684
HindII	GTYRAC	2 cut(s)	969, 1684
HindIII	AAGCTT	4 cut(s)	623, 1407, 2268, 2873
HpaII	CCGG	6 cut(s)	111, 115, 427, 504, 1148, 2320
HphI	GGTGA	6 cut(s)	241, 1102, 1295, 1539, 1673, 2856
Hpy166II	GTNNAC	2 cut(s)	969, 1684
Hpy8I	GTNNAC	2 cut(s)	969, 1684
Hpy99I	CGWCG	1 cut(s)	1749
HpyAV	CCTTC	6 cut(s)	564, 652, 1036, 1760, 1947, 2876
HpyCH4III	ACNGT	6 cut(s)	274, 976, 1606, 1786, 3047, 3168
HpyCH4IV	ACGT	1 cut(s)	790
HpyF10VI	GCNNNNNNNGC	4 cut(s)	886, 1440, 2520, 3160
HpyF3I	CTNAG	8 cut(s)	330, 621, 1161, 1215, 1337, 2100, 2109, 2615
HpySE526I	ACGT	1 cut(s)	790
Hsp92I	GRCGYC	1 cut(s)	1747
HspAI	GCGC	3 cut(s)	424, 673, 2039
KpnI	GGTACC	1 cut(s)	683
KroI	GCCGGC	4 cut(s)	110, 114, 426, 1147
KroNI	GCCGGC	4 cut(s)	112, 116, 428, 1149
Ksp22I	TGATCA	3 cut(s)	2464, 2670, 2932
LmnI	GCTCC	2 cut(s)	619, 1186
Lsp1109I	GCAGC	7 cut(s)	338, 901, 1204, 1854, 2532, 2914, 2973
LweI	GCATC	8 cut(s)	679, 1277, 1430, 2080, 2430, 2612, 3112, 3145
MaeI	CTAG	9 cut(s)	297, 693, 1301, 1650, 1965, 2055, 2792, 2831, 2966
MaeII	ACGT	1 cut(s)	790
MaeIII	GTNAC	5 cut(s)	1545, 2114, 2149, 2555, 3041
MbiI	CCGCTC	1 cut(s)	3079
MfeI	CAATTG	1 cut(s)	2042
MflI	RGATCY	8 cut(s)	448, 844, 949, 1034, 1066, 1333, 1702, 1732
MhlI	GDGCHC	3 cut(s)	1345, 2222, 2652
MmeI	TCCRAC	2 cut(s)	2982, 3048
MroNI	GCCGGC	4 cut(s)	110, 114, 426, 1147
MroXI	GAANNNNTTC	1 cut(s)	1106
MseI	TTAA	9 cut(s)	495, 597, 986, 996, 1317, 2364, 2625, 2808, 3090
MslI	CAYNNNNRTG	1 cut(s)	2085
MspA1I	CMGCKG	2 cut(s)	329, 2124
MspI	CCGG	6 cut(s)	111, 115, 427, 504, 1148, 2320
MspR9I	CCNGG	9 cut(s)	153, 550, 900, 1659, 1992, 2262, 2321, 2635, 3057
MunI	CAATTG	1 cut(s)	2042
MvaI	CCWGG	8 cut(s)	153, 550, 900, 1659, 1992, 2262, 2635, 3057
MvnI	CGCG	1 cut(s)	724
MwoI	GCNNNNNNNGC	4 cut(s)	886, 1440, 2520, 3160
NaeI	GCCGGC	4 cut(s)	112, 116, 428, 1149
NciI	CCSGG	1 cut(s)	2321
NcoI	CCATGG	3 cut(s)	1198, 1614, 2409
NgoMIV	GCCGGC	4 cut(s)	110, 114, 426, 1147
NheI	GCTAGC	1 cut(s)	1300
NlaIV	GGNNCC	3 cut(s)	386, 681, 1522
NmuCI	GTSAC	4 cut(s)	1545, 2149, 2555, 3041
NsbI	TGCGCA	1 cut(s)	2040
NspI	RCATGY	4 cut(s)	673, 1498, 2188, 2581
NspV	TTCGAA	1 cut(s)	1645
PaeI	GCATGC	1 cut(s)	673
PagI	TCATGA	2 cut(s)	1140, 1557
PaqCI	CACCTGC	1 cut(s)	429
PceI	AGGCCT	1 cut(s)	553
PciI	ACATGT	2 cut(s)	1494, 2577
PcsI	WCGNNNNNNNCGW	2 cut(s)	1642, 1750
PdiI	GCCGGC	4 cut(s)	112, 116, 428, 1149
PdmI	GAANNNNTTC	1 cut(s)	1106
PfeI	GAWTC	8 cut(s)	257, 959, 1133, 1463, 1863, 2306, 2497, 2503
PfoI	TCCNGGA	1 cut(s)	151
PkrI	GCNGC	7 cut(s)	328, 891, 1194, 1844, 2522, 2904, 2963
PpuMI	RGGWCCY	1 cut(s)	385
PscI	ACATGT	2 cut(s)	1494, 2577
PshBI	ATTAAT	1 cut(s)	996
Psp124BI	GAGCTC	2 cut(s)	1345, 2652
Psp1406I	AACGTT	1 cut(s)	790
Psp5II	RGGWCCY	1 cut(s)	385
Psp6I	CCWGG	8 cut(s)	151, 548, 898, 1657, 1990, 2260, 2633, 3055
PspFI	CCCAGC	3 cut(s)	1838, 2124, 2221
PspGI	CCWGG	8 cut(s)	151, 548, 898, 1657, 1990, 2260, 2633, 3055
PspN4I	GGNNCC	3 cut(s)	386, 681, 1522
PspPI	GGNCC	3 cut(s)	385, 2127, 2546
PspPPI	RGGWCCY	1 cut(s)	385
PstI	CTGCAG	2 cut(s)	852, 891
PstNI	CAGNNNCTG	1 cut(s)	1505
PsuI	RGATCY	8 cut(s)	448, 844, 949, 1034, 1066, 1333, 1702, 1732
PvuII	CAGCTG	2 cut(s)	329, 2124
RsaI	GTAC	3 cut(s)	681, 1129, 2582
RsaNI	GTAC	3 cut(s)	680, 1128, 2581
RseI	CAYNNNNRTG	1 cut(s)	2085
SacI	GAGCTC	2 cut(s)	1345, 2652
SaqAI	TTAA	9 cut(s)	495, 597, 986, 996, 1317, 2364, 2625, 2808, 3090
SatI	GCNGC	7 cut(s)	327, 890, 1193, 1843, 2521, 2903, 2962
Sau96I	GGNCC	3 cut(s)	385, 2127, 2546
ScaI	AGTACT	1 cut(s)	1129
ScrFI	CCNGG	9 cut(s)	153, 550, 900, 1659, 1992, 2262, 2321, 2635, 3057
SduI	GDGCHC	3 cut(s)	1345, 2222, 2652
SfaNI	GCATC	8 cut(s)	679, 1277, 1430, 2080, 2430, 2612, 3112, 3145
SfcI	CTRYAG	5 cut(s)	204, 469, 848, 887, 1796
SfuI	TTCGAA	1 cut(s)	1645
SinI	GGWCC	2 cut(s)	385, 2546
SmiMI	CAYNNNNRTG	1 cut(s)	2085
SmlI	CTYRAG	3 cut(s)	1310, 1846, 2003
SmoI	CTYRAG	3 cut(s)	1310, 1846, 2003
SpeI	ACTAGT	2 cut(s)	2791, 2830
SphI	GCATGC	1 cut(s)	673
SseBI	AGGCCT	1 cut(s)	553
SsiI	CCGC	1 cut(s)	3079
SspMI	CTAG	9 cut(s)	297, 693, 1301, 1650, 1965, 2055, 2792, 2831, 2966
SstI	GAGCTC	2 cut(s)	1345, 2652
StuI	AGGCCT	1 cut(s)	553
StyD4I	CCNGG	9 cut(s)	151, 548, 898, 1657, 1990, 2260, 2319, 2633, 3055
TaaI	ACNGT	6 cut(s)	274, 976, 1606, 1786, 3047, 3168
TaiI	ACGT	1 cut(s)	793
TaqI	TCGA	7 cut(s)	217, 464, 1578, 1645, 1744, 2083, 2652
TatI	WGTACW	2 cut(s)	1127, 2580
TfiI	GAWTC	8 cut(s)	257, 959, 1133, 1463, 1863, 2306, 2497, 2503
Tru1I	TTAA	9 cut(s)	495, 597, 986, 996, 1317, 2364, 2625, 2808, 3090
Tru9I	TTAA	9 cut(s)	495, 597, 986, 996, 1317, 2364, 2625, 2808, 3090
TscAI	CASTG	9 cut(s)	969, 979, 1611, 1765, 2232, 2346, 2700, 2861, 3052
TseFI	GTSAC	4 cut(s)	1545, 2149, 2555, 3041
TseI	GCWGC	7 cut(s)	326, 889, 1192, 1842, 2520, 2902, 2961
Tsp45I	GTSAC	4 cut(s)	1545, 2149, 2555, 3041
TspRI	CASTG	9 cut(s)	969, 979, 1611, 1765, 2232, 2346, 2700, 2861, 3052
VpaK11BI	GGWCC	2 cut(s)	385, 2546
VspI	ATTAAT	1 cut(s)	996
XapI	RAATTY	9 cut(s)	75, 569, 1156, 1609, 1936, 2356, 2778, 2813, 3051
XceI	RCATGY	4 cut(s)	673, 1498, 2188, 2581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	56
XmnI	GAANNNNTTC	1 cut(s)	1106
XspI	CTAG	9 cut(s)	297, 693, 1301, 1650, 1965, 2055, 2792, 2831, 2966
ZrmI	AGTACT	1 cut(s)	1129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.