Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8395029.1

Orthogroup ID

OG0004546

Physical Location & Seq

Genomic Coordinates Forward (+)

177 .. 1240

Gene Structure 1064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8395029.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 896 bp

atgagtcaccaagatgataccacctctcagcaatctgaaagcaacaccagcttggcctcacatgcagacacagaagccacaagcattcatcagtcagatgagattagagatacttacatgaagcagcacagccaaaagcaaaacaggccagcagtagggttgagtgatgataggttaacagcagaaactgggaaagcttccttagaacaaccaagtcctatctccgttcttgattctacattctatagggacgactcgccttctcctgtgaagaagatatcaaatgcctttaaagatgatggtgggcaaaatctggatgaagcagagtatggaccaatggacctaggtctgatatccaatagtacaatgcccagtcttggtgcagagattgaccataaaaggttagagaacctgaagcacctgattcataatcatcgacatatgagcagcacacatgaagaacccatcttcgggcacattactttcctctgtgaccgctcaaatccagatcacatgtacatttcagatatattgctagcatcaggaattcttaggtatctcgaatctgcgtggacaaccattgagctccagacattagaacacctgatcaaccctaatttgttccttgcactggaagaaattagggcagatatagaaccttgggatgatggaaagagatgtgagaagattctccagtcccaatcagatgaaaaaattcaaagaaagctagtgttcgatgtcgttaaagaattcctagttcaaaaattagttgtggagaactctttcaagcagtggttctcaccaaacaagctggcagaagggaaaccaagagggcagcagcttttgacagaattgtgctcccaggttgatcagctacaaagacgcaacttgaatgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008017 GO:0008092 GO:0008150 GO:0015631 GO:0022603 GO:0022604 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051510 GO:0051513 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 VARLMGL

Protein Analysis

299

Amino Acids

33.93

Weight (kDa)

5.22

Isoelectric Point (pI)

61.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46710 FvH4_6g46710 FvH4_6g46710 FvH4_6g46710
malus_domestica	MD09G1068400.v1.1 MD17G1061300.v1.1
prunus_persica	Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1
pyrus_communis	pycom12433g00110 pycom12433g00120 pycom17g06120
rosa_chinensis	RchiOBHm_Chr2g0165601
rosa_laevigata	RLG00000021542
rosa_multiflora	Rmu_co8268985.1_g000001 Rmu_co8395029.1_g000001 Rmu_sc0005425.1_g000021 Rmu_sc0035818.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085700
rosa_rugosa	Rorug02G0516300 Rorug02G0516400 Rorug02G0516400 Rorug02G0516400
rosa_samantha	Rh2AG582500 Rh2BG594600 Rh2CG564500 Rh2DG604500
rosa_wichuraiana	Rw0G016060 Rw2G048590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	498
AciI	CCGC	1 cut(s)	496
AcsI	RAATTY	3 cut(s)	546, 714, 749
AcuI	CTGAAG	1 cut(s)	434
AfaI	GTAC	2 cut(s)	364, 518
AfiI	CCNNNNNNNGG	5 cut(s)	155, 377, 470, 471, 631
AflIII	ACRYGT	1 cut(s)	513
AgsI	TTSAA	4 cut(s)	719, 761, 787, 892
AjnI	CCWGG	1 cut(s)	861
AluBI	AGCT	7 cut(s)	51, 197, 586, 727, 811, 841, 874
AluI	AGCT	7 cut(s)	51, 197, 586, 727, 811, 841, 874
Alw21I	GWGCWC	2 cut(s)	588, 860
AlwNI	CAGNNNCTG	1 cut(s)	188
AoxI	GGCC	2 cut(s)	54, 146
ApeKI	GCWGC	4 cut(s)	124, 447, 835, 838
ApoI	RAATTY	3 cut(s)	546, 714, 749
Asp700I	GAANNNNTTC	2 cut(s)	714, 782
AspA2I	CCTAGG	1 cut(s)	343
AspS9I	GGNCC	2 cut(s)	332, 340
AsuHPI	GGTGA	1 cut(s)	792
AsuNHI	GCTAGC	1 cut(s)	535
AvaII	GGWCC	2 cut(s)	332, 340
AvrII	CCTAGG	1 cut(s)	343
BaeGI	GKGCMC	1 cut(s)	477
BanII	GRGCYC	1 cut(s)	588
Bbv12I	GWGCWC	2 cut(s)	588, 860
BbvI	GCAGC	4 cut(s)	136, 459, 847, 850
BccI	CCATC	3 cut(s)	293, 473, 662
BciT130I	CCWGG	1 cut(s)	863
BclI	TGATCA	2 cut(s)	606, 868
BfaI	CTAG	4 cut(s)	344, 536, 728, 755
BfmI	CTRYAG	1 cut(s)	244
BisI	GCNGC	4 cut(s)	125, 448, 836, 839
BlnI	CCTAGG	1 cut(s)	343
BlsI	GCNGC	4 cut(s)	126, 449, 837, 840
Bme1390I	CCNGG	1 cut(s)	863
Bme18I	GGWCC	2 cut(s)	332, 340
BmgT120I	GGNCC	2 cut(s)	332, 340
BmrFI	CCNGG	1 cut(s)	863
BmrI	ACTGGG	2 cut(s)	198, 366
BmsI	GCATC	1 cut(s)	548
BmtI	GCTAGC	1 cut(s)	539
BmuI	ACTGGG	2 cut(s)	198, 366
BoxI	GACNNNNGTC	1 cut(s)	345
BpmI	CTGGAG	2 cut(s)	572, 677
BsaJI	CCNNGG	3 cut(s)	343, 659, 861
Bsc4I	CCNNNNNNNGG	5 cut(s)	155, 377, 470, 471, 631
Bse1I	ACTGG	4 cut(s)	193, 372, 636, 694
BseBI	CCWGG	1 cut(s)	863
BseDI	CCNNGG	3 cut(s)	343, 659, 861
BseGI	GGATG	2 cut(s)	322, 670
BseLI	CCNNNNNNNGG	5 cut(s)	155, 377, 470, 471, 631
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	4 cut(s)	193, 372, 636, 694
BseSI	GKGCMC	1 cut(s)	477
BseXI	GCAGC	4 cut(s)	136, 459, 847, 850
BsgI	GTGCAG	1 cut(s)	402
BshFI	GGCC	2 cut(s)	56, 148
BsiHKAI	GWGCWC	2 cut(s)	588, 860
BslFI	GGGAC	2 cut(s)	263, 682
BslI	CCNNNNNNNGG	5 cut(s)	155, 377, 470, 471, 631
BsmFI	GGGAC	2 cut(s)	263, 682
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	2 cut(s)	56, 148
Bsp1286I	GDGCHC	3 cut(s)	477, 588, 860
Bsp1407I	TGTACA	1 cut(s)	516
Bsp143I	GATC	3 cut(s)	508, 606, 868
BspACI	CCGC	1 cut(s)	496
BspANI	GGCC	2 cut(s)	56, 148
BspCNI	CTCAG	1 cut(s)	40
BspOI	GCTAGC	1 cut(s)	539
BsrBI	CCGCTC	1 cut(s)	498
BsrGI	TGTACA	1 cut(s)	516
BsrI	ACTGG	4 cut(s)	193, 372, 636, 694
BssECI	CCNNGG	3 cut(s)	343, 659, 861
BssMI	GATC	3 cut(s)	508, 606, 868
BssT1I	CCWWGG	2 cut(s)	343, 659
Bst2UI	CCWGG	1 cut(s)	863
BstAUI	TGTACA	1 cut(s)	516
BstC8I	GCNNGC	3 cut(s)	150, 537, 813
BstDEI	CTNAG	3 cut(s)	27, 202, 551
BstF5I	GGATG	2 cut(s)	322, 670
BstKTI	GATC	3 cut(s)	511, 609, 871
BstMBI	GATC	3 cut(s)	508, 606, 868
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 62, 145
BstNI	CCWGG	1 cut(s)	863
BstNSI	RCATGY	2 cut(s)	65, 517
BstPAI	GACNNNNGTC	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	861
BstSFI	CTRYAG	1 cut(s)	244
BstSLI	GKGCMC	1 cut(s)	477
BstV1I	GCAGC	4 cut(s)	136, 459, 847, 850
BsuRI	GGCC	2 cut(s)	56, 148
BtsCI	GGATG	2 cut(s)	322, 670
BtsI	GCAGTG	1 cut(s)	797
BtsIMutI	CAGTG	2 cut(s)	629, 797
Cac8I	GCNNGC	3 cut(s)	150, 537, 813
CaiI	CAGNNNCTG	1 cut(s)	188
Cfr13I	GGNCC	2 cut(s)	332, 340
CseI	GACGC	1 cut(s)	891
Csp6I	GTAC	2 cut(s)	363, 517
CviAII	CATG	4 cut(s)	62, 118, 455, 514
CviQI	GTAC	2 cut(s)	363, 517
DdeI	CTNAG	3 cut(s)	27, 202, 551
DpnI	GATC	3 cut(s)	510, 608, 870
DpnII	GATC	3 cut(s)	508, 606, 868
DraI	TTTAAA	1 cut(s)	292
Ecl136II	GAGCTC	1 cut(s)	586
Eco130I	CCWWGG	2 cut(s)	343, 659
Eco24I	GRGCYC	1 cut(s)	588
Eco32I	GATATC	2 cut(s)	279, 354
Eco47I	GGWCC	2 cut(s)	332, 340
Eco53kI	GAGCTC	1 cut(s)	586
Eco57I	CTGAAG	1 cut(s)	434
EcoICRI	GAGCTC	1 cut(s)	586
EcoRI	GAATTC	2 cut(s)	546, 749
EcoRII	CCWGG	1 cut(s)	861
EcoRV	GATATC	2 cut(s)	279, 354
EcoT14I	CCWWGG	2 cut(s)	343, 659
EcoT38I	GRGCYC	1 cut(s)	588
ErhI	CCWWGG	2 cut(s)	343, 659
FaeI	CATG	4 cut(s)	65, 121, 458, 517
FaqI	GGGAC	2 cut(s)	263, 682
FatI	CATG	4 cut(s)	61, 117, 454, 513
FauNDI	CATATG	1 cut(s)	441
FbaI	TGATCA	2 cut(s)	606, 868
Fnu4HI	GCNGC	4 cut(s)	125, 448, 836, 839
FokI	GGATG	2 cut(s)	329, 677
FriOI	GRGCYC	1 cut(s)	588
Fsp4HI	GCNGC	4 cut(s)	125, 448, 836, 839
FspBI	CTAG	4 cut(s)	344, 536, 728, 755
GluI	GCNGC	4 cut(s)	125, 448, 836, 839
GsuI	CTGGAG	2 cut(s)	572, 677
HaeIII	GGCC	2 cut(s)	56, 148
HgaI	GACGC	1 cut(s)	891
Hin1II	CATG	4 cut(s)	65, 121, 458, 517
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HindIII	AAGCTT	1 cut(s)	195
HinfI	GANTC	6 cut(s)	4, 233, 254, 424, 563, 688
HpaI	GTTAAC	1 cut(s)	177
HphI	GGTGA	1 cut(s)	792
Hpy166II	GTNNAC	2 cut(s)	177, 573
Hpy188I	TCNGA	5 cut(s)	37, 97, 351, 526, 706
Hpy188III	TCNNGA	6 cut(s)	230, 314, 506, 543, 560, 589
Hpy8I	GTNNAC	2 cut(s)	177, 573
HpyAV	CCTTC	2 cut(s)	270, 812
HpyCH4V	TGCA	3 cut(s)	65, 383, 629
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 62, 145
HpyF3I	CTNAG	3 cut(s)	27, 202, 551
Hsp92II	CATG	4 cut(s)	65, 121, 458, 517
Ksp22I	TGATCA	2 cut(s)	606, 868
KspAI	GTTAAC	1 cut(s)	177
Kzo9I	GATC	3 cut(s)	508, 606, 868
LmnI	GCTCC	2 cut(s)	591, 863
Lsp1109I	GCAGC	4 cut(s)	136, 459, 847, 850
LweI	GCATC	1 cut(s)	548
MaeI	CTAG	4 cut(s)	344, 536, 728, 755
MaeIII	GTNAC	2 cut(s)	5, 491
MalI	GATC	3 cut(s)	510, 608, 870
MbiI	CCGCTC	1 cut(s)	498
MboI	GATC	3 cut(s)	508, 606, 868
MboII	GAAGA	6 cut(s)	283, 286, 460, 470, 647, 697
MhlI	GDGCHC	3 cut(s)	477, 588, 860
MluCI	AATT	7 cut(s)	546, 616, 639, 714, 749, 764, 851
MlyI	GAGTC	2 cut(s)	13, 248
MnlI	CCTC	4 cut(s)	34, 67, 497, 824
MroXI	GAANNNNTTC	2 cut(s)	714, 782
MseI	TTAA	3 cut(s)	176, 291, 744
MslI	CAYNNNNRTG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	863
Mva1269I	GAATGC	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	863
MwoI	GCNNNNNNNGC	3 cut(s)	48, 62, 145
NdeI	CATATG	1 cut(s)	441
NdeII	GATC	3 cut(s)	508, 606, 868
NheI	GCTAGC	1 cut(s)	535
NlaIII	CATG	4 cut(s)	65, 121, 458, 517
NmuCI	GTSAC	2 cut(s)	5, 491
NspI	RCATGY	2 cut(s)	65, 517
PciI	ACATGT	1 cut(s)	513
PctI	GAATGC	1 cut(s)	84
PdmI	GAANNNNTTC	2 cut(s)	714, 782
PfeI	GAWTC	4 cut(s)	233, 424, 563, 688
PkrI	GCNGC	4 cut(s)	126, 449, 837, 840
PleI	GAGTC	2 cut(s)	12, 248
PpsI	GAGTC	2 cut(s)	12, 248
PscI	ACATGT	1 cut(s)	513
PshAI	GACNNNNGTC	1 cut(s)	345
Psp124BI	GAGCTC	1 cut(s)	588
Psp6I	CCWGG	1 cut(s)	861
PspGI	CCWGG	1 cut(s)	861
PspPI	GGNCC	2 cut(s)	332, 340
PstNI	CAGNNNCTG	1 cut(s)	188
RsaI	GTAC	2 cut(s)	364, 518
RsaNI	GTAC	2 cut(s)	363, 517
RseI	CAYNNNNRTG	1 cut(s)	12
SacI	GAGCTC	1 cut(s)	588
SaqAI	TTAA	3 cut(s)	176, 291, 744
SatI	GCNGC	4 cut(s)	125, 448, 836, 839
Sau3AI	GATC	3 cut(s)	508, 606, 868
Sau96I	GGNCC	2 cut(s)	332, 340
SchI	GAGTC	2 cut(s)	13, 248
ScrFI	CCNGG	1 cut(s)	863
SduI	GDGCHC	3 cut(s)	477, 588, 860
SfaNI	GCATC	1 cut(s)	548
SfcI	CTRYAG	1 cut(s)	244
SinI	GGWCC	2 cut(s)	332, 340
SmiMI	CAYNNNNRTG	1 cut(s)	12
Sse9I	AATT	7 cut(s)	546, 616, 639, 714, 749, 764, 851
SsiI	CCGC	1 cut(s)	496
SspMI	CTAG	4 cut(s)	344, 536, 728, 755
SstI	GAGCTC	1 cut(s)	588
StyD4I	CCNGG	1 cut(s)	861
StyI	CCWWGG	2 cut(s)	343, 659
TaqI	TCGA	3 cut(s)	436, 561, 735
TasI	AATT	7 cut(s)	546, 616, 639, 714, 749, 764, 851
TatI	WGTACW	2 cut(s)	362, 516
TfiI	GAWTC	4 cut(s)	233, 424, 563, 688
Tru1I	TTAA	3 cut(s)	176, 291, 744
Tru9I	TTAA	3 cut(s)	176, 291, 744
TscAI	CASTG	2 cut(s)	636, 797
TseFI	GTSAC	2 cut(s)	5, 491
TseI	GCWGC	4 cut(s)	124, 447, 835, 838
Tsp45I	GTSAC	2 cut(s)	5, 491
TspDTI	ATGAA	6 cut(s)	77, 134, 333, 416, 471, 723
TspGWI	ACGGA	1 cut(s)	214
TspRI	CASTG	2 cut(s)	636, 797
VpaK11BI	GGWCC	2 cut(s)	332, 340
XapI	RAATTY	3 cut(s)	546, 714, 749
XceI	RCATGY	2 cut(s)	65, 517
XmaJI	CCTAGG	1 cut(s)	343
XmnI	GAANNNNTTC	2 cut(s)	714, 782
XspI	CTAG	4 cut(s)	344, 536, 728, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.