Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004546

Physical Location & Seq

Genomic Coordinates Reverse (-)

7978222 .. 7983599

Gene Structure 5378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00085700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3156 bp

ATGTCTGCAAAGGTGCTTCATTCATTCAGAGATGAGAATCGTGATCTCCATAAGCAACTTGGGTGCATGAGCGGGATTTTTCAGCTGTTTGATCGCCGGCATTTCCTCTCCGGCCGGAGCATCAATAGCCACAGTCACAAGAGACTTCCTCCAGCTGAGAATGGCAACCAAGAAATAGATCCCAAAAGCAGAGCACTGCCCAAAGCTACAGATAAAAATCGAAAAAAGGCTGTCAAAGAGAGACGAAACTCCACAGAATCATCCACAACCACTGTTTCTTCATCTTCTTGTTCATCTAGCTTCTCATCATCTCTTGAATACAACAAAGCAGCTCAGCAAGAACAATCCTCGTCTGGCCAAACAATTTACAATGACAGACACACTCGGGACCTGTCCATGAACAAACCGAAGATTTCAAAGCCCTTAAGCCAGCAATCATTTGACTCAACCTACAGAGAAGCCCGTGGCATTTCAGTCAGACCTGGAGGAAAAGATGGAGTAGGTCATGTATTGAAATACATCGACTCCCCAAGGCCTTCACAACCACTAAAACCCATCAAGCCAAGGGTTTCTGGTGGCGAGTCATTTCAAGTTCATGCCAAGCTTCGGGAAGCACATCGAAATTCCAACGAGGAGAAGGATGGTTGCATGCGATTTGTGCCAAAAGAAGCAAGGAGGCTGTCTTATGATGAAAGGGCATCACGAGATACAGTGAAATCCACAACAAAACTCAAAGAACTCCCAAGGCTTTCTTTGGACAGCAAAGAACGTTCCATTAGGAGGGCTTGTAGCCCTGAAACAAGATCAAATCATTTCTTCAAGGATCTGCAGAGGGAGAATGGGAACTGTGACAAAATGCTTGACCTGCAGCCAGAACCCGGAAGTTCTAAAAGACCGAATGTTGTTGCAAAGTTGATGGGATTGGATCTCTCAGATTCAGTGTCAACCAGTGTTACTCCATTGAGGCTGATTAATACCTGTCCATCTGATAGATTTGATCCCTTGTCTAGATCATTGAGAAAAACAGATGAATCCAAGCAAGAGGCTTTTCCTGGGTTCCCAAGAAATATGCAGAAGGGCTTCAGCTCACCCCAGAGGAGAAGTGCCAATTCAGTCATGCAGCCCACCGCAAATTCTAAGTTTCCAATAGAAACAGCTCCTTGGAGGCAGCCACATGGAAGCAAAGGTCCTCCTCAATCAACTTTCAACTGTCAAGAAGAACCTACAAAAGCACCAAAGTCATCACCTTCAGTATATGGCGAAATGGAGAAAAGACTAGCAGAACTAGAGTTCAAGAAATCAGGAAAGGACCTCCGAGCTCTTAAACAGATACTTGAAGGAATGCAGAAGTGTAAGGAAAACTCGGAGGACAAAAAAGAAGCCTCAAATTTTGCCTCTCAAGTAAGCAACAAAAGTGGTTTGTCTGAGAGCACAATATCAGCAAGCAAGAGAAATACAAAACGTAGCCCATCACTTCCAGCCACAGCCATGGGTTCCAAATCCCCAAAGAGTTACAAATCACCAATCATCATCATGAAACCCGGTAAACTCATGGAGAAAACACACAACTCTGCTTCCACGGTGATCTCCATGGACAACAGATCATGTACGCGGAGGCTTCAGACTAGCAACCCTGGTGACAACAGAAAGGAATTGCTTGACAGGAAAGCCAAAGATTTGACTCCAAGAAACATTCATACTAGTGATTCTTTCAATGGACGCCTTCGCTCCACTGATAAGAATTCTAATGTGAGAACTTCTAAAGCTGCACAAAAACCAAAGATGCCCCAGAGTGAAGAAAATTCCCCGGGCTCAAGTAGGAGCATCACGAGCCCAAGACTGCAAAACAGAAGATTTGGATTGGAGAAGCAATCTCCTCCAACCACTCTATCATCAGATTCAAGCAGAAGGCAACACAGTAGGCAATCATTAGAAGCAAGCACCCCGGGTAGAAAACTCGGGCCAAAATCTCCCAGTTTTCATCAAAGCAATTGCCAACTGAGCGAGACTAGCACCAGTACAAGAGCTATGAGTCACCAAGATGATACCACTTCTCTGCAATCTGAAAGCAACACCAGCTTGGCCTCACATGCAGACACAGAAGCCACAAGCATTCATCAGTCAGATAAGATTAGAGACACTTATATGAAGCAGCACAGCCAAAAACAAAACAGGCCAGCAGTAGGGTTGAGTGATGATAGGTTAACAGCAGAAACTGGGAAAGCTTCCTTAGAACAACCAAGTCCTATCTCCGTTCTTGATTCTACATTCTATAGGGACGACTCGCCTTCTCCTGTGAAGAAGATATCAAATGCCTTTAAAGATGATGGTGGGCAAAATCTGGATGAAGCAGAGTATGGACCAATGGACCTAGGTCTGATATCCAACAGTACAACGCCCAGTCTTGGTGCAGAGATTGACCATAAAAGGTTGGAGAACCTGAAGCACCTGATTCATAATCATCGACATATGAGCAGCACACATGAAGAACCCATCTTCGGGCACATTACTTTCCTCTGTGACCGCTCAAATCCAGACCACATGTACATTTCAGATATATTGCTAGCATCAGGAATTCTTAGGTATCTCGAATCTGTGTGGACAACCATTGAGCTCCAGACATTAGAACACCTGATCAACCCTAATTTGTTCCTTGCCCTGGAAGAAATTAGGGCAGATATAGAGCCTTGGGATGATGGAAAGAGATGTGAAAAGATTCTCCAGTCCCAATCAGATGAAAAAATTCAAAGAAAGCTAGTGTTCGATGTTGTTAAAGAATTCCTAGTTCAAAAATTAGTTGTGGAGAACTCTTTCAAGCAGTGGTTCTCACCAAACAAGCTGGCAGAAGGGAAACCAAGAGGGCAGCAGCTTTTGACAGAATTGTGCTCCCAGGTTGATCAGCTACAAAGAAGCAACTTGAATGGCAACCTAGATGATGAAGATGAAAGTTTGACAAGCATCTTGTTGGAAAATTTCATGGATCAATCACAGAATTGGACAGTGTGTGATGGTGAAATTCCGAGTGTAGTGTTGGATGTTGAGCGATTGATCTTTAAAGACTTGATAACTGAAATTGTGAGCAGTGATGCAGTTGACCATGCGGGTTGGTCTGGTGGGCATTGTAGGCAACTGTTTTCCAAGAAGGGGCTCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008017 GO:0008092 GO:0008150 GO:0015631 GO:0022603 GO:0022604 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051510 GO:0051513 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 VARLMGL

Protein Analysis

1051

Amino Acids

117.84

Weight (kDa)

9.32

Isoelectric Point (pI)

64.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4378	PF14309	846 - 1024	1.6e-26	Domain of unknown function (DUF4378)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46710 FvH4_6g46710 FvH4_6g46710 FvH4_6g46710
malus_domestica	MD09G1068400.v1.1 MD17G1061300.v1.1
prunus_persica	Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1 Prupe.3G252400_v2.0.a1
pyrus_communis	pycom12433g00110 pycom12433g00120 pycom17g06120
rosa_chinensis	RchiOBHm_Chr2g0165601
rosa_laevigata	RLG00000021542
rosa_multiflora	Rmu_co8268985.1_g000001 Rmu_co8395029.1_g000001 Rmu_sc0005425.1_g000021 Rmu_sc0035818.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085700
rosa_rugosa	Rorug02G0516300 Rorug02G0516400 Rorug02G0516400 Rorug02G0516400
rosa_samantha	Rh2AG582500 Rh2BG594600 Rh2CG564500 Rh2DG604500
rosa_wichuraiana	Rw0G016060 Rw2G048590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	873
AccBSI	CCGCTC	2 cut(s)	72, 2526
AccII	CGCG	1 cut(s)	1612
AciI	CCGC	5 cut(s)	72, 1128, 1612, 2524, 3101
AclI	AACGTT	1 cut(s)	769
AclWI	GGATC	5 cut(s)	173, 831, 933, 992, 2988
AcoI	YGGCCR	2 cut(s)	112, 355
AcuI	CTGAAG	4 cut(s)	1066, 1233, 1604, 2462
AcyI	GRCGYC	1 cut(s)	1720
AfaI	GTAC	4 cut(s)	1609, 2020, 2392, 2546
AfiI	CCNNNNNNNGG	9 cut(s)	606, 780, 878, 2183, 2405, 2498, 2499, 2659, 3144
AflII	CTTAAG	1 cut(s)	424
AflIII	ACRYGT	1 cut(s)	2541
AhlI	ACTAGT	1 cut(s)	1700
AjnI	CCWGG	5 cut(s)	481, 1051, 1633, 2658, 2889
Alw21I	GWGCWC	5 cut(s)	196, 1321, 1433, 2616, 2888
Alw26I	GTCTC	4 cut(s)	136, 235, 2000, 2130
AlwI	GGATC	5 cut(s)	173, 831, 933, 992, 2988
AlwNI	CAGNNNCTG	1 cut(s)	2216
Ama87I	CYCGRG	4 cut(s)	384, 1807, 1945, 1958
AoxI	GGCC	6 cut(s)	112, 355, 533, 1961, 2082, 2174
ApeKI	GCWGC	9 cut(s)	329, 868, 1120, 1168, 1766, 2152, 2475, 2863, 2866
AseI	ATTAAT	1 cut(s)	972
Asp700I	GAANNNNTTC	4 cut(s)	1079, 2715, 2742, 2810
AspA2I	CCTAGG	1 cut(s)	2371
AspS9I	GGNCC	6 cut(s)	388, 1187, 1309, 1961, 2360, 2368
AsuC2I	CCSGG	6 cut(s)	879, 1542, 1808, 1809, 1946, 1947
AsuHPI	GGTGA	8 cut(s)	1080, 1236, 1512, 1594, 1649, 2027, 2820, 3023
AsuNHI	GCTAGC	1 cut(s)	2563
AvaI	CYCGRG	4 cut(s)	384, 1807, 1945, 1958
AvaII	GGWCC	5 cut(s)	388, 1187, 1309, 2360, 2368
AvrII	CCTAGG	1 cut(s)	2371
BaeGI	GKGCMC	1 cut(s)	2505
BalI	TGGCCA	1 cut(s)	357
BanII	GRGCYC	5 cut(s)	1321, 1814, 1835, 2616, 3150
BauI	CACGAG	2 cut(s)	702, 1828
Bbv12I	GWGCWC	5 cut(s)	196, 1321, 1433, 2616, 2888
BbvI	GCAGC	9 cut(s)	341, 880, 1132, 1180, 1753, 2164, 2487, 2875, 2878
BciT130I	CCWGG	5 cut(s)	483, 1053, 1635, 2660, 2891
BclI	TGATCA	2 cut(s)	2634, 2896
BcnI	CCSGG	6 cut(s)	879, 1542, 1808, 1809, 1946, 1947
BcoDI	GTCTC	4 cut(s)	136, 235, 2000, 2130
BcuI	ACTAGT	1 cut(s)	1700
BfmI	CTRYAG	5 cut(s)	207, 451, 827, 866, 2272
BfrI	CTTAAG	1 cut(s)	424
BfuAI	ACCTGC	1 cut(s)	873
BisI	GCNGC	9 cut(s)	330, 869, 1121, 1169, 1767, 2153, 2476, 2864, 2867
BlnI	CCTAGG	1 cut(s)	2371
BlpI	GCTNAGC	1 cut(s)	333
BlsI	GCNGC	9 cut(s)	331, 870, 1122, 1170, 1768, 2154, 2477, 2865, 2868
Bme18I	GGWCC	5 cut(s)	388, 1187, 1309, 2360, 2368
BmeT110I	CYCGRG	4 cut(s)	384, 1807, 1945, 1958
BmgT120I	GGNCC	6 cut(s)	388, 1187, 1309, 1961, 2360, 2368
BmiI	GGNNCC	3 cut(s)	389, 1058, 1495
BmrI	ACTGGG	3 cut(s)	1968, 2226, 2394
BmsI	GCATC	7 cut(s)	129, 707, 1773, 1833, 2576, 2967, 3076
BmtI	GCTAGC	1 cut(s)	2567
BmuI	ACTGGG	3 cut(s)	1968, 2226, 2394
BoxI	GACNNNNGTC	1 cut(s)	2373
BplI	GAGNNNNNCTC	2 cut(s)	133, 165
BpmI	CTGGAG	4 cut(s)	135, 504, 2600, 2705
Bpu1102I	GCTNAGC	1 cut(s)	333
BpuEI	CTTGAG	2 cut(s)	1383, 1798
BpuMI	CCSGG	6 cut(s)	879, 1542, 1808, 1809, 1946, 1947
BsaBI	GATNNNNATC	2 cut(s)	36, 216
BsaHI	GRCGYC	1 cut(s)	1720
BsaXI	ACNNNNNCTCC	4 cut(s)	509, 539, 772, 802
Bsc4I	CCNNNNNNNGG	9 cut(s)	606, 780, 878, 2183, 2405, 2498, 2499, 2659, 3144
Bse118I	RCCGGY	1 cut(s)	96
Bse1I	ACTGG	6 cut(s)	948, 1974, 2016, 2221, 2400, 2722
Bse8I	GATNNNNATC	2 cut(s)	36, 216
BseBI	CCWGG	5 cut(s)	483, 1053, 1635, 2660, 2891
BseGI	GGATG	5 cut(s)	260, 646, 2350, 2698, 3040
BseJI	GATNNNNATC	2 cut(s)	36, 216
BseLI	CCNNNNNNNGG	9 cut(s)	606, 780, 878, 2183, 2405, 2498, 2499, 2659, 3144
BseMII	CTCAG	5 cut(s)	147, 347, 945, 1416, 1991
BseNI	ACTGG	6 cut(s)	948, 1974, 2016, 2221, 2400, 2722
BseRI	GAGGAG	4 cut(s)	647, 1111, 1182, 1866
BseSI	GKGCMC	1 cut(s)	2505
BseX3I	CGGCCG	1 cut(s)	112
BseXI	GCAGC	9 cut(s)	341, 880, 1132, 1180, 1753, 2164, 2487, 2875, 2878
BsgI	GTGCAG	2 cut(s)	1752, 2430
Bsh1236I	CGCG	1 cut(s)	1612
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	6 cut(s)	114, 357, 535, 1963, 2084, 2176
BsiEI	CGRYCG	1 cut(s)	115
BsiHKAI	GWGCWC	5 cut(s)	196, 1321, 1433, 2616, 2888
BsiHKCI	CYCGRG	4 cut(s)	384, 1807, 1945, 1958
BsiSI	CCGG	7 cut(s)	97, 111, 115, 879, 1542, 1808, 1946
BslFI	GGGAC	3 cut(s)	401, 2291, 2710
BslI	CCNNNNNNNGG	9 cut(s)	606, 780, 878, 2183, 2405, 2498, 2499, 2659, 3144
BsmAI	GTCTC	4 cut(s)	136, 235, 2000, 2130
BsmBI	CGTCTC	1 cut(s)	235
BsmFI	GGGAC	3 cut(s)	401, 2291, 2710
BsmI	GAATGC	2 cut(s)	1347, 2112
BsnI	GGCC	6 cut(s)	114, 357, 535, 1963, 2084, 2176
BsoBI	CYCGRG	4 cut(s)	384, 1807, 1945, 1958
Bsp1286I	GDGCHC	9 cut(s)	196, 1321, 1433, 1814, 1835, 2505, 2616, 2888, 3150
Bsp1407I	TGTACA	1 cut(s)	2544
Bsp1720I	GCTNAGC	1 cut(s)	333
Bsp19I	CCATGG	2 cut(s)	1488, 1590
BspACI	CCGC	5 cut(s)	72, 1128, 1612, 2524, 3101
BspANI	GGCC	6 cut(s)	114, 357, 535, 1963, 2084, 2176
BspCNI	CTCAG	5 cut(s)	148, 346, 944, 1417, 1992
BspFNI	CGCG	1 cut(s)	1612
BspHI	TCATGA	1 cut(s)	1533
BspLI	GGNNCC	3 cut(s)	389, 1058, 1495
BspMAI	CTGCAG	2 cut(s)	831, 870
BspMI	ACCTGC	1 cut(s)	873
BspOI	GCTAGC	1 cut(s)	2567
BspPI	GGATC	5 cut(s)	173, 831, 933, 992, 2988
BspTI	CTTAAG	1 cut(s)	424
BsrBI	CCGCTC	2 cut(s)	72, 2526
BsrFI	RCCGGY	1 cut(s)	96
BsrGI	TGTACA	1 cut(s)	2544
BsrI	ACTGG	6 cut(s)	948, 1974, 2016, 2221, 2400, 2722
BssAI	RCCGGY	1 cut(s)	96
BssNI	GRCGYC	1 cut(s)	1720
BssSI	CACGAG	2 cut(s)	702, 1828
BssT1I	CCWWGG	8 cut(s)	530, 563, 743, 1160, 1488, 1590, 2371, 2687
Bst2BI	CACGAG	2 cut(s)	702, 1828
Bst2UI	CCWGG	5 cut(s)	483, 1053, 1635, 2660, 2891
BstACI	GRCGYC	1 cut(s)	1720
BstAFI	CTTAAG	1 cut(s)	424
BstAUI	TGTACA	1 cut(s)	2544
BstC8I	GCNNGC	8 cut(s)	98, 431, 650, 1444, 1939, 2178, 2565, 2841
BstDEI	CTNAG	8 cut(s)	156, 333, 931, 1137, 1425, 2000, 2230, 2579
BstDSI	CCRYGG	4 cut(s)	463, 1488, 1578, 1590
BstF5I	GGATG	5 cut(s)	260, 646, 2350, 2698, 3040
BstFNI	CGCG	1 cut(s)	1612
BstMAI	GTCTC	4 cut(s)	136, 235, 2000, 2130
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	9 cut(s)	126, 658, 865, 1830, 2001, 2010, 2076, 2090, 3124
BstNI	CCWGG	5 cut(s)	483, 1053, 1635, 2660, 2891
BstNSI	RCATGY	3 cut(s)	652, 2093, 2545
BstPAI	GACNNNNGTC	1 cut(s)	2373
BstSFI	CTRYAG	5 cut(s)	207, 451, 827, 866, 2272
BstSLI	GKGCMC	1 cut(s)	2505
BstUI	CGCG	1 cut(s)	1612
BstV1I	GCAGC	9 cut(s)	341, 880, 1132, 1180, 1753, 2164, 2487, 2875, 2878
BstX2I	RGATCY	3 cut(s)	178, 823, 925
BstXI	CCANNNNNNTGG	1 cut(s)	1489
BstYI	RGATCY	3 cut(s)	178, 823, 925
BstZI	CGGCCG	1 cut(s)	112
BsuRI	GGCC	6 cut(s)	114, 357, 535, 1963, 2084, 2176
BtgI	CCRYGG	4 cut(s)	463, 1488, 1578, 1590
BtsCI	GGATG	5 cut(s)	260, 646, 2350, 2698, 3040
BtsI	GCAGTG	3 cut(s)	194, 2825, 3088
BtsIMutI	CAGTG	9 cut(s)	194, 270, 717, 945, 955, 1731, 2825, 3006, 3088
BveI	ACCTGC	1 cut(s)	873
Cac8I	GCNNGC	8 cut(s)	98, 431, 650, 1444, 1939, 2178, 2565, 2841
CaiI	CAGNNNCTG	1 cut(s)	2216
CciI	TCATGA	1 cut(s)	1533
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	6 cut(s)	388, 1187, 1309, 1961, 2360, 2368
Cfr9I	CCCGGG	2 cut(s)	1807, 1945
CseI	GACGC	1 cut(s)	1728
Csp6I	GTAC	4 cut(s)	1608, 2019, 2391, 2545
CspCI	CAANNNNNGTGG	2 cut(s)	1396, 1431
CviQI	GTAC	4 cut(s)	1608, 2019, 2391, 2545
DdeI	CTNAG	8 cut(s)	156, 333, 931, 1137, 1425, 2000, 2230, 2579
DraI	TTTAAA	2 cut(s)	2320, 3055
EaeI	YGGCCR	2 cut(s)	112, 355
EagI	CGGCCG	1 cut(s)	112
Ecl136II	GAGCTC	2 cut(s)	1319, 2614
EclXI	CGGCCG	1 cut(s)	112
Eco130I	CCWWGG	8 cut(s)	530, 563, 743, 1160, 1488, 1590, 2371, 2687
Eco147I	AGGCCT	1 cut(s)	535
Eco24I	GRGCYC	5 cut(s)	1321, 1814, 1835, 2616, 3150
Eco32I	GATATC	2 cut(s)	2307, 2382
Eco47I	GGWCC	5 cut(s)	388, 1187, 1309, 2360, 2368
Eco52I	CGGCCG	1 cut(s)	112
Eco53kI	GAGCTC	2 cut(s)	1319, 2614
Eco57I	CTGAAG	4 cut(s)	1066, 1233, 1604, 2462
Eco88I	CYCGRG	4 cut(s)	384, 1807, 1945, 1958
EcoICRI	GAGCTC	2 cut(s)	1319, 2614
EcoO109I	RGGNCCY	3 cut(s)	388, 1187, 1309
EcoRI	GAATTC	3 cut(s)	1741, 2574, 2777
EcoRII	CCWGG	5 cut(s)	481, 1051, 1633, 2658, 2889
EcoRV	GATATC	2 cut(s)	2307, 2382
EcoT14I	CCWWGG	8 cut(s)	530, 563, 743, 1160, 1488, 1590, 2371, 2687
EcoT38I	GRGCYC	5 cut(s)	1321, 1814, 1835, 2616, 3150
ErhI	CCWWGG	8 cut(s)	530, 563, 743, 1160, 1488, 1590, 2371, 2687
Esp3I	CGTCTC	1 cut(s)	235
FalI	AAGNNNNNCTT	2 cut(s)	736, 768
FaqI	GGGAC	3 cut(s)	401, 2291, 2710
FauI	CCCGC	2 cut(s)	65, 3094
FauNDI	CATATG	1 cut(s)	2469
FbaI	TGATCA	2 cut(s)	2634, 2896
Fnu4HI	GCNGC	9 cut(s)	330, 869, 1121, 1169, 1767, 2153, 2476, 2864, 2867
FokI	GGATG	5 cut(s)	247, 653, 2357, 2705, 3047
FriOI	GRGCYC	5 cut(s)	1321, 1814, 1835, 2616, 3150
Fsp4HI	GCNGC	9 cut(s)	330, 869, 1121, 1169, 1767, 2153, 2476, 2864, 2867
GluI	GCNGC	9 cut(s)	330, 869, 1121, 1169, 1767, 2153, 2476, 2864, 2867
GsuI	CTGGAG	4 cut(s)	135, 504, 2600, 2705
HaeIII	GGCC	6 cut(s)	114, 357, 535, 1963, 2084, 2176
HapII	CCGG	7 cut(s)	97, 111, 115, 879, 1542, 1808, 1946
HgaI	GACGC	1 cut(s)	1728
Hin1I	GRCGYC	1 cut(s)	1720
HincII	GTYRAC	3 cut(s)	945, 2205, 3094
HindII	GTYRAC	3 cut(s)	945, 2205, 3094
HindIII	AAGCTT	2 cut(s)	602, 2223
HpaI	GTTAAC	1 cut(s)	2205
HpaII	CCGG	7 cut(s)	97, 111, 115, 879, 1542, 1808, 1946
HphI	GGTGA	8 cut(s)	1080, 1236, 1512, 1594, 1649, 2027, 2820, 3023
Hpy166II	GTNNAC	5 cut(s)	945, 1547, 2205, 2601, 3094
Hpy8I	GTNNAC	5 cut(s)	945, 1547, 2205, 2601, 3094
HpyCH4IV	ACGT	2 cut(s)	769, 1462
HpyF10VI	GCNNNNNNNGC	9 cut(s)	126, 658, 865, 1830, 2001, 2010, 2076, 2090, 3124
HpyF3I	CTNAG	8 cut(s)	156, 333, 931, 1137, 1425, 2000, 2230, 2579
HpySE526I	ACGT	2 cut(s)	769, 1462
Hsp92I	GRCGYC	1 cut(s)	1720
KroI	GCCGGC	1 cut(s)	96
KroNI	GCCGGC	1 cut(s)	98
Ksp22I	TGATCA	2 cut(s)	2634, 2896
KspAI	GTTAAC	1 cut(s)	2205
LmnI	GCTCC	6 cut(s)	117, 1162, 1733, 1821, 2619, 2891
Lsp1109I	GCAGC	9 cut(s)	341, 880, 1132, 1180, 1753, 2164, 2487, 2875, 2878
LweI	GCATC	7 cut(s)	129, 707, 1773, 1833, 2576, 2967, 3076
MaeII	ACGT	2 cut(s)	769, 1462
MaeIII	GTNAC	7 cut(s)	134, 848, 952, 1511, 1637, 2033, 2519
MbiI	CCGCTC	2 cut(s)	72, 2526
MfeI	CAATTG	1 cut(s)	1990
MflI	RGATCY	3 cut(s)	178, 823, 925
MhlI	GDGCHC	9 cut(s)	196, 1321, 1433, 1814, 1835, 2505, 2616, 2888, 3150
MlsI	TGGCCA	1 cut(s)	357
MluNI	TGGCCA	1 cut(s)	357
MlyI	GAGTC	6 cut(s)	437, 518, 590, 1675, 2041, 2276
MmeI	TCCRAC	6 cut(s)	651, 1904, 2409, 2412, 2946, 3012
Mox20I	TGGCCA	1 cut(s)	357
MroNI	GCCGGC	1 cut(s)	96
MroXI	GAANNNNTTC	4 cut(s)	1079, 2715, 2742, 2810
MscI	TGGCCA	1 cut(s)	357
MseI	TTAA	7 cut(s)	425, 972, 1323, 2204, 2319, 2772, 3054
MslI	CAYNNNNRTG	5 cut(s)	1487, 1532, 1701, 2040, 2144
Msp20I	TGGCCA	1 cut(s)	357
MspA1I	CMGCKG	2 cut(s)	85, 155
MspCI	CTTAAG	1 cut(s)	424
MspI	CCGG	7 cut(s)	97, 111, 115, 879, 1542, 1808, 1946
MunI	CAATTG	1 cut(s)	1990
Mva1269I	GAATGC	2 cut(s)	1347, 2112
MvaI	CCWGG	5 cut(s)	483, 1053, 1635, 2660, 2891
MvnI	CGCG	1 cut(s)	1612
MwoI	GCNNNNNNNGC	9 cut(s)	126, 658, 865, 1830, 2001, 2010, 2076, 2090, 3124
NaeI	GCCGGC	1 cut(s)	98
NciI	CCSGG	6 cut(s)	879, 1542, 1808, 1809, 1946, 1947
NcoI	CCATGG	2 cut(s)	1488, 1590
NdeI	CATATG	1 cut(s)	2469
NgoMIV	GCCGGC	1 cut(s)	96
NheI	GCTAGC	1 cut(s)	2563
NlaIV	GGNNCC	3 cut(s)	389, 1058, 1495
NmuCI	GTSAC	5 cut(s)	134, 848, 1637, 2033, 2519
NspI	RCATGY	3 cut(s)	652, 2093, 2545
PaeI	GCATGC	1 cut(s)	652
PagI	TCATGA	1 cut(s)	1533
PceI	AGGCCT	1 cut(s)	535
PciI	ACATGT	1 cut(s)	2541
PctI	GAATGC	2 cut(s)	1347, 2112
PdiI	GCCGGC	1 cut(s)	98
PdmI	GAANNNNTTC	4 cut(s)	1079, 2715, 2742, 2810
PkrI	GCNGC	9 cut(s)	331, 870, 1122, 1170, 1768, 2154, 2477, 2865, 2868
PleI	GAGTC	6 cut(s)	437, 518, 589, 1675, 2040, 2276
PpsI	GAGTC	6 cut(s)	437, 518, 589, 1675, 2040, 2276
PpuMI	RGGWCCY	3 cut(s)	388, 1187, 1309
PscI	ACATGT	1 cut(s)	2541
PshAI	GACNNNNGTC	1 cut(s)	2373
PshBI	ATTAAT	1 cut(s)	972
Psp124BI	GAGCTC	2 cut(s)	1321, 2616
Psp1406I	AACGTT	1 cut(s)	769
Psp5II	RGGWCCY	3 cut(s)	388, 1187, 1309
Psp6I	CCWGG	5 cut(s)	481, 1051, 1633, 2658, 2889
PspGI	CCWGG	5 cut(s)	481, 1051, 1633, 2658, 2889
PspN4I	GGNNCC	3 cut(s)	389, 1058, 1495
PspPI	GGNCC	6 cut(s)	388, 1187, 1309, 1961, 2360, 2368
PspPPI	RGGWCCY	3 cut(s)	388, 1187, 1309
PstI	CTGCAG	2 cut(s)	831, 870
PstNI	CAGNNNCTG	1 cut(s)	2216
PsuI	RGATCY	3 cut(s)	178, 823, 925
PvuII	CAGCTG	2 cut(s)	85, 155
RsaI	GTAC	4 cut(s)	1609, 2020, 2392, 2546
RsaNI	GTAC	4 cut(s)	1608, 2019, 2391, 2545
RseI	CAYNNNNRTG	5 cut(s)	1487, 1532, 1701, 2040, 2144
SacI	GAGCTC	2 cut(s)	1321, 2616
SaqAI	TTAA	7 cut(s)	425, 972, 1323, 2204, 2319, 2772, 3054
SatI	GCNGC	9 cut(s)	330, 869, 1121, 1169, 1767, 2153, 2476, 2864, 2867
Sau96I	GGNCC	6 cut(s)	388, 1187, 1309, 1961, 2360, 2368
SchI	GAGTC	6 cut(s)	437, 518, 590, 1675, 2041, 2276
SduI	GDGCHC	9 cut(s)	196, 1321, 1433, 1814, 1835, 2505, 2616, 2888, 3150
SfaNI	GCATC	7 cut(s)	129, 707, 1773, 1833, 2576, 2967, 3076
SfcI	CTRYAG	5 cut(s)	207, 451, 827, 866, 2272
SinI	GGWCC	5 cut(s)	388, 1187, 1309, 2360, 2368
SmaI	CCCGGG	2 cut(s)	1809, 1947
SmiMI	CAYNNNNRTG	5 cut(s)	1487, 1532, 1701, 2040, 2144
SmlI	CTYRAG	3 cut(s)	424, 1398, 1813
SmoI	CTYRAG	3 cut(s)	424, 1398, 1813
SpeI	ACTAGT	1 cut(s)	1700
SphI	GCATGC	1 cut(s)	652
SseBI	AGGCCT	1 cut(s)	535
SsiI	CCGC	5 cut(s)	72, 1128, 1612, 2524, 3101
SstI	GAGCTC	2 cut(s)	1321, 2616
StuI	AGGCCT	1 cut(s)	535
StyI	CCWWGG	8 cut(s)	530, 563, 743, 1160, 1488, 1590, 2371, 2687
TaiI	ACGT	2 cut(s)	772, 1465
TaqI	TCGA	6 cut(s)	220, 522, 619, 2464, 2589, 2763
TaqII	GACCGA	1 cut(s)	910
TatI	WGTACW	3 cut(s)	2018, 2390, 2544
Tru1I	TTAA	7 cut(s)	425, 972, 1323, 2204, 2319, 2772, 3054
Tru9I	TTAA	7 cut(s)	425, 972, 1323, 2204, 2319, 2772, 3054
TscAI	CASTG	9 cut(s)	201, 277, 717, 945, 955, 1738, 2825, 3006, 3088
TseFI	GTSAC	5 cut(s)	134, 848, 1637, 2033, 2519
TseI	GCWGC	9 cut(s)	329, 868, 1120, 1168, 1766, 2152, 2475, 2863, 2866
Tsp45I	GTSAC	5 cut(s)	134, 848, 1637, 2033, 2519
TspGWI	ACGGA	1 cut(s)	2242
TspMI	CCCGGG	2 cut(s)	1807, 1945
TspRI	CASTG	9 cut(s)	201, 277, 717, 945, 955, 1738, 2825, 3006, 3088
Vha464I	CTTAAG	1 cut(s)	424
VpaK11BI	GGWCC	5 cut(s)	388, 1187, 1309, 2360, 2368
VspI	ATTAAT	1 cut(s)	972
XbaI	TCTAGA	1 cut(s)	1007
XceI	RCATGY	3 cut(s)	652, 2093, 2545
XcmI	CCANNNNNNNNNTGG	1 cut(s)	56
XmaI	CCCGGG	2 cut(s)	1807, 1945
XmaJI	CCTAGG	1 cut(s)	2371
XmnI	GAANNNNTTC	4 cut(s)	1079, 2715, 2742, 2810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.