Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013849

Physical Location & Seq

Genomic Coordinates Forward (+)

415389 .. 417723

Gene Structure 2335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G02230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGTTGAGCCGGCGAACACCGTTGGAATTCCGGTGAACCACATCCCATTGTTGAAGGATGAGCTCGATATCGTGATCCCCACGATCCGTAACCTCGATTTCCTGGAGATGTGGAGGCCTTTTCTTCAGCCTTACCATCTGATTATCGTCCAAGATGGAGATCCATCGAAGACCATTGCTGTCCCTGAAGGGTTCGATTACGAACTCTACAACAGGAACGACATCAACCGTATCCTTGGTCCTAAAGCTTCCTGCATTTCCTTCAAGGACTCTGCTTGTCGTTGCTTCGGCTACATGGTCTCCAAGAAGAAGTACATCTTCACTATTGATGACGATTGCTTCGTTGCTAAGGATCCATCTGGAAAAGCTGTGAACGCTCTTGAGCAACACATCAAGAACCTTCTCTGCCCATCAACTCCATTTTTCTTCAACACCTTGTACGACCCATACCGTGAAGGTGCTGACTTCGTCCGTGGATACCCTTTCAGTCTCCGTGAGGGTGTTTCCACCGCTGTTTCCCACGGTCTGTGGCTCAACATCCCTGATTACGATGCCCCTACCCAACTTGTGAAGCCTAAGGAAAGGAACACAAGGTATGTGGATGCTGTCATGACCATCCCAAAGGGAACTCTTTTCCCTATGTGTGGTATGAACTTGGCCTTTGACCGTGAGCTCATTGGTCCGGCTATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTCGCTACGACGATATGTGGGCTGGATGGTGTATCAAGGTGATCTGTGACCATTTGGGATTGGGAGTGAAGACAGGTTTGCCCTACATTTACCACAGCAAAGCCAGCAACCCGTTTGTGAACTTGAAGAAGGAGTACAAGGGAATCTTCTGGCAGGAGGATATCATTCCTTTCTTCCAGAGCGCAAAGCTCACGAAAGAAGCTGTGACAGTTCAACAATGCTACATGGAGCTGTCCAAGTTGGTGAAGGAGAAGCTAAGCCCCATTGATCCTTACTTTGACAAGCTTGCAGATGCTATGGTCACTTGGATTGAAGCTTGGGATGAGCTTAACCCACCCACTAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0003674 GO:0003735 GO:0003824 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005795 GO:0005829 GO:0005840 GO:0005844 GO:0005975 GO:0005996 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009225 GO:0009555 GO:0009628 GO:0009651 GO:0009832 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0016760 GO:0016853 GO:0016866 GO:0019321 GO:0019322 GO:0019566 GO:0019567 GO:0022626 GO:0030312 GO:0031090 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032991 GO:0033356 GO:0034641 GO:0035251 GO:0042221 GO:0042546 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046364 GO:0046483 GO:0046527 GO:0046686 GO:0048229 GO:0048856 GO:0050896 GO:0052691 GO:0055086 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0098588 GO:0098791 GO:0098805 GO:1901135 GO:1901360 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

RGP

Protein Analysis

357

Amino Acids

40.63

Weight (kDa)

5.61

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RGP	PF03214	18 - 352	7.5e-181	Reversibly glycosylated polypeptide

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02230 AT5G15650
fragaria_vesca	FvH4_6g46510
malus_domestica	MD09G1073400.v1.1 MD17G1064900.v1.1
prunus_persica	Prupe.3G249900_v2.0.a1
pyrus_communis	pycom17g06490
rosa_chinensis	RchiOBHm_Chr2g0165161
rosa_laevigata	RLG00000021513
rosa_multiflora	Rmu_sc0001097.1_g000042
rosa_roxburghii	Rroxscaffold_2G00085980
rosa_rugosa	Rorug02G0512800
rosa_samantha	Rh2AG581000 Rh2BG592300 Rh2CG563000 Rh2DG602300
rosa_wichuraiana	Rw2G048250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	510
AclWI	GGATC	6 cut(s)	70, 79, 155, 347, 360, 986
AcsI	RAATTY	1 cut(s)	27
AcuI	CTGAAG	2 cut(s)	110, 207
AfaI	GTAC	4 cut(s)	314, 440, 692, 860
AfiI	CCNNNNNNNGG	1 cut(s)	644
AgsI	TTSAA	6 cut(s)	55, 265, 430, 850, 938, 1037
AjnI	CCWGG	1 cut(s)	102
Alw21I	GWGCWC	2 cut(s)	66, 675
Alw26I	GTCTC	3 cut(s)	304, 494, 704
AlwI	GGATC	6 cut(s)	70, 79, 155, 347, 360, 986
AoxI	GGCC	2 cut(s)	116, 657
ApoI	RAATTY	1 cut(s)	27
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
AspLEI	GCGC	1 cut(s)	908
AspS9I	GGNCC	2 cut(s)	239, 680
AsuHPI	GGTGA	4 cut(s)	46, 719, 775, 979
AvaII	GGWCC	2 cut(s)	239, 680
AxyI	CCTNAGG	1 cut(s)	576
BamHI	GGATCC	1 cut(s)	352
BanII	GRGCYC	2 cut(s)	66, 675
BarI	GAAGNNNNNNTAC	2 cut(s)	842, 874
BbsI	GAAGAC	2 cut(s)	176, 800
Bbv12I	GWGCWC	2 cut(s)	66, 675
BccI	CCATC	8 cut(s)	144, 149, 172, 364, 418, 623, 704, 744
BciT130I	CCWGG	1 cut(s)	104
BciVI	GTATCC	2 cut(s)	242, 470
BcoDI	GTCTC	3 cut(s)	304, 494, 704
BfuI	GTATCC	2 cut(s)	242, 470
BlpI	GCTNAGC	1 cut(s)	980
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	2 cut(s)	239, 680
BmgT120I	GGNCC	2 cut(s)	239, 680
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	3 cut(s)	541, 592, 1006
BpiI	GAAGAC	2 cut(s)	176, 800
BpmI	CTGGAG	1 cut(s)	125
Bpu10I	CCTNAGC	1 cut(s)	348
Bpu1102I	GCTNAGC	1 cut(s)	980
BpuEI	CTTGAG	1 cut(s)	401
BsaBI	GATNNNNATC	1 cut(s)	159
BsaI	GGTCTC	2 cut(s)	304, 704
BsaJI	CCNNGG	3 cut(s)	235, 472, 520
BsaWI	WCCGGW	1 cut(s)	31
BsaXI	ACNNNNNCTCC	2 cut(s)	284, 314
Bsc4I	CCNNNNNNNGG	1 cut(s)	644
Bse118I	RCCGGY	1 cut(s)	10
Bse21I	CCTNAGG	1 cut(s)	576
Bse3DI	GCAATG	1 cut(s)	174
Bse8I	GATNNNNATC	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	3 cut(s)	235, 472, 520
BseGI	GGATG	7 cut(s)	42, 64, 537, 607, 615, 755, 1051
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	644
BseMI	GCAATG	1 cut(s)	174
BshFI	GGCC	2 cut(s)	118, 659
BsiHKAI	GWGCWC	2 cut(s)	66, 675
BsiSI	CCGG	3 cut(s)	11, 32, 683
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	644
BsmAI	GTCTC	3 cut(s)	304, 494, 704
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	2 cut(s)	118, 659
Bso31I	GGTCTC	2 cut(s)	304, 704
Bsp1286I	GDGCHC	2 cut(s)	66, 675
Bsp143I	GATC	6 cut(s)	75, 84, 160, 352, 765, 991
Bsp1720I	GCTNAGC	1 cut(s)	980
BspACI	CCGC	1 cut(s)	510
BspANI	GGCC	2 cut(s)	118, 659
BspHI	TCATGA	1 cut(s)	609
BspLI	GGNNCC	1 cut(s)	354
BspPI	GGATC	6 cut(s)	70, 79, 155, 347, 360, 986
BspTNI	GGTCTC	2 cut(s)	304, 704
BsrDI	GCAATG	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	10
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	3 cut(s)	235, 472, 520
BssMI	GATC	6 cut(s)	75, 84, 160, 352, 765, 991
BssT1I	CCWWGG	1 cut(s)	235
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	6 cut(s)	22, 230, 452, 524, 668, 934
BstC8I	GCNNGC	3 cut(s)	12, 829, 1011
BstDEI	CTNAG	3 cut(s)	348, 576, 980
BstDSI	CCRYGG	2 cut(s)	472, 520
BstF5I	GGATG	7 cut(s)	42, 64, 537, 607, 615, 755, 1051
BstHHI	GCGC	1 cut(s)	908
BstKTI	GATC	6 cut(s)	78, 87, 163, 355, 768, 994
BstMAI	GTCTC	3 cut(s)	304, 494, 704
BstMBI	GATC	6 cut(s)	75, 84, 160, 352, 765, 991
BstMWI	GCNNNNNNNGC	2 cut(s)	374, 828
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	102
BstV2I	GAAGAC	2 cut(s)	176, 800
BstX2I	RGATCY	2 cut(s)	160, 352
BstYI	RGATCY	2 cut(s)	160, 352
Bsu36I	CCTNAGG	1 cut(s)	576
BsuI	GTATCC	2 cut(s)	242, 470
BsuRI	GGCC	2 cut(s)	118, 659
BtgI	CCRYGG	2 cut(s)	472, 520
BtsCI	GGATG	7 cut(s)	42, 64, 537, 607, 615, 755, 1051
Cac8I	GCNNGC	3 cut(s)	12, 829, 1011
CciI	TCATGA	1 cut(s)	609
CfoI	GCGC	1 cut(s)	908
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	2 cut(s)	239, 680
Csp6I	GTAC	4 cut(s)	313, 439, 691, 859
CspCI	CAANNNNNGTGG	2 cut(s)	579, 614
CviAII	CATG	4 cut(s)	295, 610, 703, 949
CviQI	GTAC	4 cut(s)	313, 439, 691, 859
DdeI	CTNAG	3 cut(s)	348, 576, 980
DpnI	GATC	6 cut(s)	77, 86, 162, 354, 767, 993
DpnII	GATC	6 cut(s)	75, 84, 160, 352, 765, 991
Ecl136II	GAGCTC	2 cut(s)	64, 673
Eco130I	CCWWGG	1 cut(s)	235
Eco147I	AGGCCT	1 cut(s)	118
Eco24I	GRGCYC	2 cut(s)	66, 675
Eco31I	GGTCTC	2 cut(s)	304, 704
Eco32I	GATATC	2 cut(s)	70, 886
Eco47I	GGWCC	2 cut(s)	239, 680
Eco53kI	GAGCTC	2 cut(s)	64, 673
Eco57I	CTGAAG	2 cut(s)	110, 207
Eco81I	CCTNAGG	1 cut(s)	576
EcoICRI	GAGCTC	2 cut(s)	64, 673
EcoRI	GAATTC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	102
EcoRV	GATATC	2 cut(s)	70, 886
EcoT14I	CCWWGG	1 cut(s)	235
EcoT38I	GRGCYC	2 cut(s)	66, 675
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	4 cut(s)	298, 613, 706, 952
FalI	AAGNNNNNCTT	4 cut(s)	302, 334, 854, 886
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	4 cut(s)	294, 609, 702, 948
FokI	GGATG	7 cut(s)	29, 71, 524, 602, 614, 762, 1058
FriOI	GRGCYC	2 cut(s)	66, 675
GlaI	GCGC	1 cut(s)	907
GsuI	CTGGAG	1 cut(s)	125
HaeIII	GGCC	2 cut(s)	118, 659
HapII	CCGG	3 cut(s)	11, 32, 683
HhaI	GCGC	1 cut(s)	908
Hin1II	CATG	4 cut(s)	298, 613, 706, 952
Hin6I	GCGC	1 cut(s)	906
HinP1I	GCGC	1 cut(s)	906
HindIII	AAGCTT	4 cut(s)	246, 1007, 1038, 1068
HinfI	GANTC	2 cut(s)	269, 867
HpaII	CCGG	3 cut(s)	11, 32, 683
HphI	GGTGA	4 cut(s)	46, 719, 775, 979
Hpy166II	GTNNAC	3 cut(s)	37, 373, 844
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	7 cut(s)	73, 360, 380, 394, 610, 901, 916
Hpy8I	GTNNAC	3 cut(s)	37, 373, 844
Hpy99I	CGWCG	1 cut(s)	737
HpyAV	CCTTC	7 cut(s)	49, 182, 271, 410, 449, 847, 964
HpyCH4III	ACNGT	6 cut(s)	22, 230, 452, 524, 668, 934
HpyCH4V	TGCA	2 cut(s)	255, 1013
HpyF10VI	GCNNNNNNNGC	2 cut(s)	374, 828
HpyF3I	CTNAG	3 cut(s)	348, 576, 980
Hsp92II	CATG	4 cut(s)	298, 613, 706, 952
HspAI	GCGC	1 cut(s)	906
KroI	GCCGGC	1 cut(s)	10
KroNI	GCCGGC	1 cut(s)	12
Kzo9I	GATC	6 cut(s)	75, 84, 160, 352, 765, 991
LmnI	GCTCC	1 cut(s)	952
LweI	GCATC	3 cut(s)	541, 592, 1006
MaeIII	GTNAC	4 cut(s)	89, 770, 928, 1024
MalI	GATC	6 cut(s)	77, 86, 162, 354, 767, 993
MboI	GATC	6 cut(s)	75, 84, 160, 352, 765, 991
MboII	GAAGA	9 cut(s)	116, 181, 310, 319, 418, 805, 862, 862, 889
MflI	RGATCY	2 cut(s)	160, 352
MhlI	GDGCHC	2 cut(s)	66, 675
MluCI	AATT	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	4
MnlI	CCTC	4 cut(s)	104, 108, 490, 874
MroNI	GCCGGC	1 cut(s)	10
MseI	TTAA	1 cut(s)	1053
MspA1I	CMGCKG	1 cut(s)	512
MspI	CCGG	3 cut(s)	11, 32, 683
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	2 cut(s)	374, 828
NaeI	GCCGGC	1 cut(s)	12
NdeII	GATC	6 cut(s)	75, 84, 160, 352, 765, 991
NgoMIV	GCCGGC	1 cut(s)	10
NlaIII	CATG	4 cut(s)	298, 613, 706, 952
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	3 cut(s)	770, 928, 1024
PagI	TCATGA	1 cut(s)	609
PceI	AGGCCT	1 cut(s)	118
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PdiI	GCCGGC	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	867
PflFI	GACNNNGTC	1 cut(s)	467
PfoI	TCCNGGA	1 cut(s)	102
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
Psp124BI	GAGCTC	2 cut(s)	66, 675
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	2 cut(s)	239, 680
PsuI	RGATCY	2 cut(s)	160, 352
PsyI	GACNNNGTC	1 cut(s)	467
RsaI	GTAC	4 cut(s)	314, 440, 692, 860
RsaNI	GTAC	4 cut(s)	313, 439, 691, 859
SacI	GAGCTC	2 cut(s)	66, 675
SaqAI	TTAA	1 cut(s)	1053
Sau3AI	GATC	6 cut(s)	75, 84, 160, 352, 765, 991
Sau96I	GGNCC	2 cut(s)	239, 680
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	2 cut(s)	66, 675
SfaNI	GCATC	3 cut(s)	541, 592, 1006
SinI	GGWCC	2 cut(s)	239, 680
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	1 cut(s)	27
SseBI	AGGCCT	1 cut(s)	118
SsiI	CCGC	1 cut(s)	510
SstI	GAGCTC	2 cut(s)	66, 675
StuI	AGGCCT	1 cut(s)	118
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	6 cut(s)	22, 230, 452, 524, 668, 934
TaqI	TCGA	4 cut(s)	66, 96, 167, 195
TasI	AATT	1 cut(s)	27
TatI	WGTACW	3 cut(s)	312, 690, 858
TfiI	GAWTC	1 cut(s)	867
Tru1I	TTAA	1 cut(s)	1053
Tru9I	TTAA	1 cut(s)	1053
TseFI	GTSAC	3 cut(s)	770, 928, 1024
Tsp45I	GTSAC	3 cut(s)	770, 928, 1024
TspDTI	ATGAA	1 cut(s)	665
TspGWI	ACGGA	3 cut(s)	77, 461, 482
Tth111I	GACNNNGTC	1 cut(s)	467
VpaK11BI	GGWCC	2 cut(s)	239, 680
XapI	RAATTY	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.