FvH4_6g46510

Alpha-1,4-glucan-protein synthase (UDP-forming)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
35472980 .. 35475225
2246 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g46510.t1

Sequence Viewer

Length: 1071 bp
ATGGTGACTCCAACCCATTTGCTCAAGGATGAGCTCGACATTGTGATCCCGACCATCCGAAACCTCGACTTCCTCGAGATGTGGAGGCCCTTCCTCCAACCCTACCACCTCATCATCGTCCAGGACGGCGATCCGACCAAGACCATCAAGGTCCCTGAAGGCTTTGATTATGAACTCTACAACCGTAACGACATTAACAGAATGCTTGGCCCTCGCTCCAGTTGCATTTCCTTCAAGGACTCTGCTTGCCGTTGCTTCGGTTACATGGTCTCCAAGAAGAAGTACATCTTCACCATTGATGATGACTGCTTTGTTGCAAGTGACCCATCTGGGAAGCTAGTGAATGCTCTGGAGCAGCACATCAAGAACCTTCTTTGCCCATCCACCCCATTTTTCTTCAACACTCTCTATGATCCTTTCAGGGAGGGTGCGGATTTCGTCCGTGGATACCCTTTCAGTCTCCGCGAGGGTGTCCCAACTGCTGTTTCTCATGGTCTGTGGCTCAACATCCCTGATTATGATGCACCTACTCAGCTTGTGAAGCCTCTTGAGAGGAATACTAGGTATGTGGATGCTGTTCTGACCATTCCAAAGGGCACCTTGTTCCCAATGTGTGGTATGAATTTGGCTTTCGACCGTGATCTCATCGGCCCTGCAATGTACTTCGGACTCATGGGTGACGGCCAGCCAATTGGACGTTACGACGATATGTGGGCTGGCTGGTGTATCAAGGTGATCTGTGACCATTTGGGGCTGGGAGTCAAGACAGGTCTGCCTTATATCTATCACAGCAAGGCTAGTAACCCATTTGTGAACCTGAGGAAGGAATACAAAGGCATCTTCTGGCAGGAAGAGATCATTCCTTTCTTCCAGGCTGCTGTTCTCCCCAAGGACTGCACCACTGTGCAAGCCTGCTACGTTGAACTGTCCAAGCAGGTGAAGGACAAGCTCGGCAAGGTTGATCCCTACTTTGACAAGCTGGCTGATGCCATGGTCACATGGATTGAAGCTTGGGATGAGCTCAACCCAAACGGCCCTGGTGCTAAAGCCAACGGCGCCAAAGCAAAATAA

Protein Analysis

357

Amino Acids

40.39

Weight (kDa)

5.91

Isoelectric Point (pI)

31.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RGP PF03214 8 - 342 6.1e-178 Reversibly glycosylated polypeptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013849)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02230 AT5G15650
fragaria_vesca FvH4_6g46510
malus_domestica MD09G1073400.v1.1 MD17G1064900.v1.1
prunus_persica Prupe.3G249900_v2.0.a1
pyrus_communis pycom17g06490
rosa_chinensis RchiOBHm_Chr2g0165161
rosa_laevigata RLG00000021513
rosa_multiflora Rmu_sc0001097.1_g000042
rosa_roxburghii Rroxscaffold_2G00085980
rosa_rugosa Rorug02G0512800
rosa_samantha Rh2AG581000 Rh2BG592300 Rh2CG563000 Rh2DG602300
rosa_wichuraiana Rw2G048250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 925
Acc36I ACCTGC 1 cut(s) 925
AccB1I GGYRCC 2 cut(s) 596, 1055
AccB7I CCANNNNNTGG 1 cut(s) 614
AccII CGCG 1 cut(s) 465
AciI CCGC 2 cut(s) 431, 463
AclWI GGATC 4 cut(s) 40, 125, 407, 956
AcoI YGGCCR 1 cut(s) 682
AcsI RAATTY 1 cut(s) 622
AcuI CTGAAG 1 cut(s) 177
AcyI GRCGYC 1 cut(s) 1056
AfaI GTAC 2 cut(s) 284, 662
AfiI CCNNNNNNNGG 2 cut(s) 614, 823
AgsI TTSAA 4 cut(s) 235, 400, 923, 1007
AjnI CCWGG 3 cut(s) 120, 870, 1036
AjuI GAANNNNNNNTTGG 2 cut(s) 469, 501
AleI CACNNNNGTG 1 cut(s) 902
AluBI AGCT 7 cut(s) 34, 337, 535, 949, 979, 1010, 1021
AluI AGCT 7 cut(s) 34, 337, 535, 949, 979, 1010, 1021
Alw21I GWGCWC 2 cut(s) 36, 1023
Alw26I GTCTC 2 cut(s) 274, 464
AlwI GGATC 4 cut(s) 40, 125, 407, 956
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 5 cut(s) 86, 208, 649, 682, 1033
ApeKI GCWGC 2 cut(s) 355, 875
ApoI RAATTY 1 cut(s) 622
AspLEI GCGC 1 cut(s) 1058
AspS9I GGNCC 5 cut(s) 87, 151, 209, 650, 1034
AsuHPI GGTGA 5 cut(s) 16, 283, 689, 745, 949
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 1 cut(s) 151
AxyI CCTNAGG 1 cut(s) 818
BaeGI GKGCMC 1 cut(s) 599
BanI GGYRCC 2 cut(s) 596, 1055
BanII GRGCYC 2 cut(s) 36, 1023
Bbv12I GWGCWC 2 cut(s) 36, 1023
BbvI GCAGC 2 cut(s) 367, 862
BccI CCATC 4 cut(s) 62, 152, 334, 388
BceAI ACGGC 5 cut(s) 142, 234, 697, 1048, 1069
BciT130I CCWGG 3 cut(s) 122, 872, 1038
BciVI GTATCC 1 cut(s) 440
BcoDI GTCTC 2 cut(s) 274, 464
BfaI CTAG 3 cut(s) 338, 561, 798
BfoI RGCGCY 1 cut(s) 1059
BfuAI ACCTGC 1 cut(s) 925
BfuI GTATCC 1 cut(s) 440
BisI GCNGC 2 cut(s) 356, 876
BlsI GCNGC 2 cut(s) 357, 877
Bme1390I CCNGG 3 cut(s) 122, 872, 1038
Bme18I GGWCC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 5 cut(s) 87, 151, 209, 650, 1034
BmiI GGNNCC 3 cut(s) 153, 598, 1057
BmrFI CCNGG 3 cut(s) 122, 872, 1038
BmsI GCATC 4 cut(s) 511, 562, 846, 976
BpmI CTGGAG 2 cut(s) 202, 371
BpuEI CTTGAG 2 cut(s) 8, 569
BsaHI GRCGYC 1 cut(s) 1056
BsaI GGTCTC 1 cut(s) 274
BsaJI CCNNGG 4 cut(s) 442, 888, 990, 1036
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 2 cut(s) 614, 823
Bse1I ACTGG 1 cut(s) 219
Bse21I CCTNAGG 1 cut(s) 818
Bse3DI GCAATG 1 cut(s) 663
BseBI CCWGG 3 cut(s) 122, 872, 1038
BseDI CCNNGG 4 cut(s) 442, 888, 990, 1036
BseGI GGATG 6 cut(s) 34, 54, 380, 507, 577, 1021
BseLI CCNNNNNNNGG 2 cut(s) 614, 823
BseMI GCAATG 1 cut(s) 663
BseMII CTCAG 2 cut(s) 545, 809
BseNI ACTGG 1 cut(s) 219
BseSI GKGCMC 1 cut(s) 599
BseXI GCAGC 2 cut(s) 367, 862
BseYI CCCAGC 1 cut(s) 754
BsgI GTGCAG 1 cut(s) 880
Bsh1236I CGCG 1 cut(s) 465
Bsh1285I CGRYCG 1 cut(s) 637
BshFI GGCC 5 cut(s) 88, 210, 651, 684, 1035
BshNI GGYRCC 2 cut(s) 596, 1055
BsiEI CGRYCG 1 cut(s) 637
BsiHKAI GWGCWC 2 cut(s) 36, 1023
BsiHKCI CYCGRG 1 cut(s) 74
BslFI GGGAC 2 cut(s) 137, 458
BslI CCNNNNNNNGG 2 cut(s) 614, 823
BsmAI GTCTC 2 cut(s) 274, 464
BsmFI GGGAC 2 cut(s) 137, 458
BsmI GAATGC 2 cut(s) 207, 349
BsnI GGCC 5 cut(s) 88, 210, 651, 684, 1035
Bso31I GGTCTC 1 cut(s) 274
BsoBI CYCGRG 1 cut(s) 74
Bsp1286I GDGCHC 3 cut(s) 36, 599, 1023
Bsp143I GATC 7 cut(s) 45, 130, 412, 640, 735, 855, 961
Bsp19I CCATGG 1 cut(s) 990
BspACI CCGC 2 cut(s) 431, 463
BspANI GGCC 5 cut(s) 88, 210, 651, 684, 1035
BspCNI CTCAG 2 cut(s) 544, 810
BspFNI CGCG 1 cut(s) 465
BspLI GGNNCC 3 cut(s) 153, 598, 1057
BspMI ACCTGC 1 cut(s) 925
BspPI GGATC 4 cut(s) 40, 125, 407, 956
BspT107I GGYRCC 2 cut(s) 596, 1055
BspTNI GGTCTC 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 663
BsrI ACTGG 1 cut(s) 219
BssECI CCNNGG 4 cut(s) 442, 888, 990, 1036
BssMI GATC 7 cut(s) 45, 130, 412, 640, 735, 855, 961
BssNI GRCGYC 1 cut(s) 1056
BssT1I CCWWGG 2 cut(s) 888, 990
Bst2UI CCWGG 3 cut(s) 122, 872, 1038
Bst4CI ACNGT 4 cut(s) 185, 638, 904, 927
Bst6I CTCTTC 1 cut(s) 846
BstACI GRCGYC 1 cut(s) 1056
BstC8I GCNNGC 6 cut(s) 247, 686, 718, 909, 913, 981
BstDEI CTNAG 2 cut(s) 531, 818
BstDSI CCRYGG 2 cut(s) 442, 990
BstENI CCTNNNNNAGG 1 cut(s) 821
BstF5I GGATG 6 cut(s) 34, 54, 380, 507, 577, 1021
BstFNI CGCG 1 cut(s) 465
BstH2I RGCGCY 1 cut(s) 1059
BstHHI GCGC 1 cut(s) 1058
BstKTI GATC 7 cut(s) 48, 133, 415, 643, 738, 858, 964
BstMAI GTCTC 2 cut(s) 274, 464
BstMBI GATC 7 cut(s) 45, 130, 412, 640, 735, 855, 961
BstMCI CGRYCG 1 cut(s) 637
BstMWI GCNNNNNNNGC 3 cut(s) 222, 541, 1055
BstNI CCWGG 3 cut(s) 122, 872, 1038
BstSCI CCNGG 3 cut(s) 120, 870, 1036
BstSLI GKGCMC 1 cut(s) 599
BstUI CGCG 1 cut(s) 465
BstV1I GCAGC 2 cut(s) 367, 862
BstXI CCANNNNNNTGG 1 cut(s) 692
Bsu36I CCTNAGG 1 cut(s) 818
BsuI GTATCC 1 cut(s) 440
BsuRI GGCC 5 cut(s) 88, 210, 651, 684, 1035
BtgI CCRYGG 2 cut(s) 442, 990
BtsCI GGATG 6 cut(s) 34, 54, 380, 507, 577, 1021
BtsIMutI CAGTG 1 cut(s) 900
BveI ACCTGC 1 cut(s) 925
Cac8I GCNNGC 6 cut(s) 247, 686, 718, 909, 913, 981
CfoI GCGC 1 cut(s) 1058
Cfr13I GGNCC 5 cut(s) 87, 151, 209, 650, 1034
Csp6I GTAC 2 cut(s) 283, 661
CviAII CATG 5 cut(s) 265, 491, 673, 991, 999
CviQI GTAC 2 cut(s) 283, 661
DdeI CTNAG 2 cut(s) 531, 818
DinI GGCGCC 1 cut(s) 1057
DpnI GATC 7 cut(s) 47, 132, 414, 642, 737, 857, 963
DpnII GATC 7 cut(s) 45, 130, 412, 640, 735, 855, 961
EaeI YGGCCR 1 cut(s) 682
Eam1104I CTCTTC 1 cut(s) 846
EarI CTCTTC 1 cut(s) 846
Ecl136II GAGCTC 2 cut(s) 34, 1021
Eco130I CCWWGG 2 cut(s) 888, 990
Eco24I GRGCYC 2 cut(s) 36, 1023
Eco31I GGTCTC 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 151
Eco53kI GAGCTC 2 cut(s) 34, 1021
Eco57I CTGAAG 1 cut(s) 177
Eco81I CCTNAGG 1 cut(s) 818
Eco88I CYCGRG 1 cut(s) 74
EcoICRI GAGCTC 2 cut(s) 34, 1021
EcoNI CCTNNNNNAGG 1 cut(s) 821
EcoO109I RGGNCCY 2 cut(s) 87, 151
EcoRII CCWGG 3 cut(s) 120, 870, 1036
EcoT14I CCWWGG 2 cut(s) 888, 990
EcoT38I GRGCYC 2 cut(s) 36, 1023
EgeI GGCGCC 1 cut(s) 1057
EheI GGCGCC 1 cut(s) 1057
ErhI CCWWGG 2 cut(s) 888, 990
FaeI CATG 5 cut(s) 268, 494, 676, 994, 1002
FalI AAGNNNNNCTT 4 cut(s) 272, 304, 584, 616
FaqI GGGAC 2 cut(s) 137, 458
FatI CATG 5 cut(s) 264, 490, 672, 990, 998
Fnu4HI GCNGC 2 cut(s) 356, 876
FokI GGATG 6 cut(s) 41, 41, 367, 494, 584, 1028
FriOI GRGCYC 2 cut(s) 36, 1023
Fsp4HI GCNGC 2 cut(s) 356, 876
FspBI CTAG 3 cut(s) 338, 561, 798
GlaI GCGC 1 cut(s) 1057
GluI GCNGC 2 cut(s) 356, 876
GsaI CCCAGC 1 cut(s) 758
GsuI CTGGAG 2 cut(s) 202, 371
HaeII RGCGCY 1 cut(s) 1059
HaeIII GGCC 5 cut(s) 88, 210, 651, 684, 1035
HhaI GCGC 1 cut(s) 1058
Hin1I GRCGYC 1 cut(s) 1056
Hin1II CATG 5 cut(s) 268, 494, 676, 994, 1002
Hin6I GCGC 1 cut(s) 1056
HinP1I GCGC 1 cut(s) 1056
HindIII AAGCTT 1 cut(s) 1008
HinfI GANTC 4 cut(s) 7, 239, 669, 759
HphI GGTGA 5 cut(s) 16, 283, 689, 745, 949
Hpy166II GTNNAC 1 cut(s) 814
Hpy188I TCNGA 4 cut(s) 59, 135, 582, 668
Hpy188III TCNNGA 6 cut(s) 49, 76, 350, 364, 548, 763
Hpy8I GTNNAC 1 cut(s) 814
Hpy99I CGWCG 1 cut(s) 707
HpyAV CCTTC 6 cut(s) 100, 152, 241, 380, 817, 934
HpyCH4III ACNGT 4 cut(s) 185, 638, 904, 927
HpyCH4IV ACGT 2 cut(s) 697, 918
HpyCH4V TGCA 6 cut(s) 225, 317, 524, 656, 897, 907
HpyF10VI GCNNNNNNNGC 3 cut(s) 222, 541, 1055
HpyF3I CTNAG 2 cut(s) 531, 818
HpySE526I ACGT 2 cut(s) 697, 918
Hsp92I GRCGYC 1 cut(s) 1056
Hsp92II CATG 5 cut(s) 268, 494, 676, 994, 1002
HspAI GCGC 1 cut(s) 1056
KasI GGCGCC 1 cut(s) 1055
Kzo9I GATC 7 cut(s) 45, 130, 412, 640, 735, 855, 961
LmnI GCTCC 2 cut(s) 221, 352
Lsp1109I GCAGC 2 cut(s) 367, 862
LweI GCATC 4 cut(s) 511, 562, 846, 976
MaeI CTAG 3 cut(s) 338, 561, 798
MaeII ACGT 2 cut(s) 697, 918
MaeIII GTNAC 9 cut(s) 4, 185, 260, 320, 677, 698, 740, 800, 994
MalI GATC 7 cut(s) 47, 132, 414, 642, 737, 857, 963
MboI GATC 7 cut(s) 45, 130, 412, 640, 735, 855, 961
MboII GAAGA 6 cut(s) 280, 289, 388, 832, 859, 863
MfeI CAATTG 1 cut(s) 690
MhlI GDGCHC 3 cut(s) 36, 599, 1023
MluCI AATT 2 cut(s) 622, 690
Mly113I GGCGCC 1 cut(s) 1056
MlyI GAGTC 3 cut(s) 233, 663, 768
MmeI TCCRAC 3 cut(s) 35, 121, 158
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 902
MspR9I CCNGG 3 cut(s) 122, 872, 1038
MunI CAATTG 1 cut(s) 690
Mva1269I GAATGC 2 cut(s) 207, 349
MvaI CCWGG 3 cut(s) 122, 872, 1038
MvnI CGCG 1 cut(s) 465
MwoI GCNNNNNNNGC 3 cut(s) 222, 541, 1055
NarI GGCGCC 1 cut(s) 1056
NcoI CCATGG 1 cut(s) 990
NdeII GATC 7 cut(s) 45, 130, 412, 640, 735, 855, 961
NlaIII CATG 5 cut(s) 268, 494, 676, 994, 1002
NlaIV GGNNCC 3 cut(s) 153, 598, 1057
NmeAIII GCCGAG 1 cut(s) 930
NmuCI GTSAC 5 cut(s) 4, 320, 677, 740, 994
OliI CACNNNNGTG 1 cut(s) 902
PaeR7I CTCGAG 1 cut(s) 74
PaqCI CACCTGC 1 cut(s) 925
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PctI GAATGC 2 cut(s) 207, 349
PflMI CCANNNNNTGG 1 cut(s) 614
PfoI TCCNGGA 1 cut(s) 120
PkrI GCNGC 2 cut(s) 357, 877
PleI GAGTC 3 cut(s) 233, 663, 767
PluTI GGCGCC 1 cut(s) 1059
PpsI GAGTC 3 cut(s) 233, 663, 767
PpuMI RGGWCCY 1 cut(s) 151
Psp124BI GAGCTC 2 cut(s) 36, 1023
Psp5II RGGWCCY 1 cut(s) 151
Psp6I CCWGG 3 cut(s) 120, 870, 1036
PspFI CCCAGC 1 cut(s) 754
PspGI CCWGG 3 cut(s) 120, 870, 1036
PspN4I GGNNCC 3 cut(s) 153, 598, 1057
PspPI GGNCC 5 cut(s) 87, 151, 209, 650, 1034
PspPPI RGGWCCY 1 cut(s) 151
RsaI GTAC 2 cut(s) 284, 662
RsaNI GTAC 2 cut(s) 283, 661
RseI CAYNNNNRTG 1 cut(s) 902
SacI GAGCTC 2 cut(s) 36, 1023
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 2 cut(s) 356, 876
Sau3AI GATC 7 cut(s) 45, 130, 412, 640, 735, 855, 961
Sau96I GGNCC 5 cut(s) 87, 151, 209, 650, 1034
SchI GAGTC 3 cut(s) 233, 663, 768
ScrFI CCNGG 3 cut(s) 122, 872, 1038
SduI GDGCHC 3 cut(s) 36, 599, 1023
SfaNI GCATC 4 cut(s) 511, 562, 846, 976
SfoI GGCGCC 1 cut(s) 1057
Sfr274I CTCGAG 1 cut(s) 74
SinI GGWCC 1 cut(s) 151
SlaI CTCGAG 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 902
SmlI CTYRAG 3 cut(s) 23, 74, 548
SmoI CTYRAG 3 cut(s) 23, 74, 548
Sse9I AATT 2 cut(s) 622, 690
SsiI CCGC 2 cut(s) 431, 463
SspDI GGCGCC 1 cut(s) 1055
SspMI CTAG 3 cut(s) 338, 561, 798
SstI GAGCTC 2 cut(s) 36, 1023
StyD4I CCNGG 3 cut(s) 120, 870, 1036
StyI CCWWGG 2 cut(s) 888, 990
TaaI ACNGT 4 cut(s) 185, 638, 904, 927
TaiI ACGT 2 cut(s) 700, 921
TaqI TCGA 4 cut(s) 36, 66, 75, 633
TasI AATT 2 cut(s) 622, 690
TatI WGTACW 2 cut(s) 282, 660
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 1 cut(s) 907
TseFI GTSAC 5 cut(s) 4, 320, 677, 740, 994
TseI GCWGC 2 cut(s) 355, 875
Tsp45I GTSAC 5 cut(s) 4, 320, 677, 740, 994
TspDTI ATGAA 2 cut(s) 186, 635
TspGWI ACGGA 1 cut(s) 431
TspRI CASTG 1 cut(s) 907
Van91I CCANNNNNTGG 1 cut(s) 614
VpaK11BI GGWCC 1 cut(s) 151
XagI CCTNNNNNAGG 1 cut(s) 821
XapI RAATTY 1 cut(s) 622
XhoI CTCGAG 1 cut(s) 74
XspI CTAG 3 cut(s) 338, 561, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.