Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013849

Physical Location & Seq

Genomic Coordinates Forward (+)

76042902 .. 76044666

Gene Structure 1765 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021513

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCGACTCCGACCCATTTGCTCAAGGATGAGCTCGACATTGTGATCCCTACCATACGAAACCTCGACTTCCTCGAGATGTGGAGGCCGTTCCTCCAGCCCTACCACTTGATCATTGTCCAGGACGGCGACCCCACCAAGACCATCAAGGTCCCCGAGGGATTTGACTACGAACTCTACAACCGTAACGACATTAACAGAATGCTTGGCCCTCGCTCCAATTGCATTTCGTTTAAGGACTCCGCTTGCCGTTGCTTCGGTTACATGGTCTCCAAGAAGAAGTACATCTTCACCATTGACGATGATTGCTTTGTTGCACAAGACCCATCTGGCAAATTAGTGAATGCACTGGAGCAGCACATCAAGAACCTTCTTTGCCCATCTACCCCATTTTTCTTCAACACCCTCTATGACCCTTTCAGGGAGGGTGCGGATTTCGTCCGTGGATACCCTTTCAGTCTCCGTGAGGGTGTCCCAACTGCTGTTTCTCACGGTCTTTGGCTCAATATCCCCGATTATGATGCACCTACTCAGCTTGTGAAGCCTCTTGAGAGGAACACCAGGTATGTGGATGCTGTCCTGACAATTCCAAAGGGCACCCTGTTCCCCATGTGTGGTATGAATTTGGCTTTCGACCGTGATCTCATTGGCCCTGCAATGTACTTCGGACTCATGGGTGATGGCCAGCCAATTGGACGTTACGATGATATGTGGGCTGGCTGGTGTATCAAGGTGATCTGTGACCATTTGGGGCTGGGAGTGAAGACAGGTCTGCCTTATATCTATCACAGCAAGGCAAGTAACCCATTTGTGAACCTGAGGAAGGAATACAAAGGCATCTTCTGGCAGGAAGAGATCATCCCTTTCTTCCAGGCCGCTGTTCTCCCCAAGGACTGCACCACTGTGCAAGCCTGCTACATCGAACTGTCCAAGCAGGTCAAGGACAAGCTCGGCAAGGTAGATCCCTACTTTGACAAGCTGGCCGATGCCATGGTCACATGGATTGAAGCTTGGGATGAGCTCAACCCAAGCGGATCTGGTGCTAAAATAGCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0003674 GO:0003735 GO:0003824 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005795 GO:0005829 GO:0005840 GO:0005844 GO:0005975 GO:0005996 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009225 GO:0009555 GO:0009628 GO:0009651 GO:0009832 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0016760 GO:0016853 GO:0016866 GO:0019321 GO:0019322 GO:0019566 GO:0019567 GO:0022626 GO:0030312 GO:0031090 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032991 GO:0033356 GO:0034641 GO:0035251 GO:0042221 GO:0042546 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046364 GO:0046483 GO:0046527 GO:0046686 GO:0048229 GO:0048856 GO:0050896 GO:0052691 GO:0055086 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0098588 GO:0098791 GO:0098805 GO:1901135 GO:1901360 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

RGP

Protein Analysis

353

Amino Acids

40.07

Weight (kDa)

5.74

Isoelectric Point (pI)

33.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RGP	PF03214	8 - 342	9.7e-179	Reversibly glycosylated polypeptide

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02230 AT5G15650
fragaria_vesca	FvH4_6g46510
malus_domestica	MD09G1073400.v1.1 MD17G1064900.v1.1
prunus_persica	Prupe.3G249900_v2.0.a1
pyrus_communis	pycom17g06490
rosa_chinensis	RchiOBHm_Chr2g0165161
rosa_laevigata	RLG00000021513
rosa_multiflora	Rmu_sc0001097.1_g000042
rosa_roxburghii	Rroxscaffold_2G00085980
rosa_rugosa	Rorug02G0512800
rosa_samantha	Rh2AG581000 Rh2BG592300 Rh2CG563000 Rh2DG602300
rosa_wichuraiana	Rw2G048250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	925
AccB1I	GGYRCC	1 cut(s)	596
AciI	CCGC	4 cut(s)	243, 431, 876, 1032
AclWI	GGATC	3 cut(s)	40, 956, 1042
AcoI	YGGCCR	2 cut(s)	682, 981
AcsI	RAATTY	1 cut(s)	622
AfaI	GTAC	2 cut(s)	284, 662
AfiI	CCNNNNNNNGG	3 cut(s)	421, 614, 823
AgsI	TTSAA	2 cut(s)	400, 1007
AjnI	CCWGG	3 cut(s)	120, 560, 870
AjuI	GAANNNNNNNTTGG	2 cut(s)	469, 501
AleI	CACNNNNGTG	1 cut(s)	902
AluBI	AGCT	6 cut(s)	34, 535, 949, 979, 1010, 1021
AluI	AGCT	6 cut(s)	34, 535, 949, 979, 1010, 1021
Alw21I	GWGCWC	2 cut(s)	36, 1023
Alw26I	GTCTC	2 cut(s)	274, 464
AlwI	GGATC	3 cut(s)	40, 956, 1042
Ama87I	CYCGRG	2 cut(s)	74, 155
AoxI	GGCC	6 cut(s)	86, 208, 649, 682, 873, 981
ApeKI	GCWGC	1 cut(s)	355
ApoI	RAATTY	1 cut(s)	622
AspS9I	GGNCC	3 cut(s)	151, 209, 650
AsuHPI	GGTGA	3 cut(s)	283, 689, 745
AvaI	CYCGRG	2 cut(s)	74, 155
AvaII	GGWCC	1 cut(s)	151
AxyI	CCTNAGG	1 cut(s)	818
BaeGI	GKGCMC	1 cut(s)	599
BalI	TGGCCA	1 cut(s)	684
BanI	GGYRCC	1 cut(s)	596
BanII	GRGCYC	2 cut(s)	36, 1023
BbsI	GAAGAC	1 cut(s)	770
Bbv12I	GWGCWC	2 cut(s)	36, 1023
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	4 cut(s)	152, 334, 388, 674
BceAI	ACGGC	3 cut(s)	73, 142, 234
BcgI	CGANNNNNNTGC	3 cut(s)	35, 503, 537
BciT130I	CCWGG	3 cut(s)	122, 562, 872
BciVI	GTATCC	1 cut(s)	440
BclI	TGATCA	1 cut(s)	111
BcoDI	GTCTC	2 cut(s)	274, 464
BfuAI	ACCTGC	1 cut(s)	925
BfuI	GTATCC	1 cut(s)	440
BisI	GCNGC	2 cut(s)	356, 876
BlsI	GCNGC	2 cut(s)	357, 877
Bme1390I	CCNGG	3 cut(s)	122, 562, 872
Bme18I	GGWCC	1 cut(s)	151
BmeT110I	CYCGRG	2 cut(s)	74, 155
BmgT120I	GGNCC	3 cut(s)	151, 209, 650
BmiI	GGNNCC	2 cut(s)	153, 598
BmrFI	CCNGG	3 cut(s)	122, 562, 872
BmsI	GCATC	4 cut(s)	511, 562, 846, 976
BpiI	GAAGAC	1 cut(s)	770
BpmI	CTGGAG	2 cut(s)	80, 371
BpuEI	CTTGAG	2 cut(s)	8, 569
BsaI	GGTCTC	1 cut(s)	274
BsaJI	CCNNGG	4 cut(s)	156, 442, 888, 990
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	3 cut(s)	421, 614, 823
Bse1I	ACTGG	1 cut(s)	354
Bse21I	CCTNAGG	1 cut(s)	818
Bse3DI	GCAATG	1 cut(s)	663
BseBI	CCWGG	3 cut(s)	122, 562, 872
BseDI	CCNNGG	4 cut(s)	156, 442, 888, 990
BseGI	GGATG	4 cut(s)	34, 577, 858, 1021
BseLI	CCNNNNNNNGG	3 cut(s)	421, 614, 823
BseMI	GCAATG	1 cut(s)	663
BseMII	CTCAG	2 cut(s)	545, 809
BseNI	ACTGG	1 cut(s)	354
BseSI	GKGCMC	1 cut(s)	599
BseXI	GCAGC	1 cut(s)	367
BseYI	CCCAGC	1 cut(s)	754
BsgI	GTGCAG	1 cut(s)	880
Bsh1285I	CGRYCG	1 cut(s)	637
BshFI	GGCC	6 cut(s)	88, 210, 651, 684, 875, 983
BshNI	GGYRCC	1 cut(s)	596
BsiEI	CGRYCG	1 cut(s)	637
BsiHKAI	GWGCWC	2 cut(s)	36, 1023
BsiHKCI	CYCGRG	2 cut(s)	74, 155
BslFI	GGGAC	2 cut(s)	137, 458
BslI	CCNNNNNNNGG	3 cut(s)	421, 614, 823
BsmAI	GTCTC	2 cut(s)	274, 464
BsmFI	GGGAC	2 cut(s)	137, 458
BsmI	GAATGC	2 cut(s)	207, 349
BsnI	GGCC	6 cut(s)	88, 210, 651, 684, 875, 983
Bso31I	GGTCTC	1 cut(s)	274
BsoBI	CYCGRG	2 cut(s)	74, 155
Bsp1286I	GDGCHC	3 cut(s)	36, 599, 1023
Bsp143I	GATC	7 cut(s)	45, 111, 640, 735, 855, 961, 1034
Bsp19I	CCATGG	1 cut(s)	990
BspACI	CCGC	4 cut(s)	243, 431, 876, 1032
BspANI	GGCC	6 cut(s)	88, 210, 651, 684, 875, 983
BspCNI	CTCAG	2 cut(s)	544, 810
BspLI	GGNNCC	2 cut(s)	153, 598
BspMI	ACCTGC	1 cut(s)	925
BspPI	GGATC	3 cut(s)	40, 956, 1042
BspT107I	GGYRCC	1 cut(s)	596
BspTNI	GGTCTC	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	663
BsrI	ACTGG	1 cut(s)	354
BssECI	CCNNGG	4 cut(s)	156, 442, 888, 990
BssMI	GATC	7 cut(s)	45, 111, 640, 735, 855, 961, 1034
BssT1I	CCWWGG	2 cut(s)	888, 990
Bst2UI	CCWGG	3 cut(s)	122, 562, 872
Bst4CI	ACNGT	5 cut(s)	185, 494, 638, 904, 927
Bst6I	CTCTTC	1 cut(s)	846
BstC8I	GCNNGC	6 cut(s)	247, 686, 718, 909, 913, 981
BstDEI	CTNAG	2 cut(s)	531, 818
BstDSI	CCRYGG	2 cut(s)	442, 990
BstENI	CCTNNNNNAGG	1 cut(s)	821
BstF5I	GGATG	4 cut(s)	34, 577, 858, 1021
BstKTI	GATC	7 cut(s)	48, 114, 643, 738, 858, 964, 1037
BstMAI	GTCTC	2 cut(s)	274, 464
BstMBI	GATC	7 cut(s)	45, 111, 640, 735, 855, 961, 1034
BstMCI	CGRYCG	1 cut(s)	637
BstMWI	GCNNNNNNNGC	3 cut(s)	222, 541, 1049
BstNI	CCWGG	3 cut(s)	122, 562, 872
BstSCI	CCNGG	3 cut(s)	120, 560, 870
BstSLI	GKGCMC	1 cut(s)	599
BstV1I	GCAGC	1 cut(s)	367
BstV2I	GAAGAC	1 cut(s)	770
BstX2I	RGATCY	2 cut(s)	961, 1034
BstXI	CCANNNNNNTGG	2 cut(s)	568, 692
BstYI	RGATCY	2 cut(s)	961, 1034
Bsu36I	CCTNAGG	1 cut(s)	818
BsuI	GTATCC	1 cut(s)	440
BsuRI	GGCC	6 cut(s)	88, 210, 651, 684, 875, 983
BtgI	CCRYGG	2 cut(s)	442, 990
BtsCI	GGATG	4 cut(s)	34, 577, 858, 1021
BtsIMutI	CAGTG	2 cut(s)	347, 900
BveI	ACCTGC	1 cut(s)	925
Cac8I	GCNNGC	6 cut(s)	247, 686, 718, 909, 913, 981
Cfr13I	GGNCC	3 cut(s)	151, 209, 650
CsiI	ACCWGGT	1 cut(s)	560
Csp6I	GTAC	2 cut(s)	283, 661
CviAII	CATG	5 cut(s)	265, 610, 673, 991, 999
CviQI	GTAC	2 cut(s)	283, 661
DdeI	CTNAG	2 cut(s)	531, 818
DpnI	GATC	7 cut(s)	47, 113, 642, 737, 857, 963, 1036
DpnII	GATC	7 cut(s)	45, 111, 640, 735, 855, 961, 1034
EaeI	YGGCCR	2 cut(s)	682, 981
Eam1104I	CTCTTC	1 cut(s)	846
EarI	CTCTTC	1 cut(s)	846
Ecl136II	GAGCTC	2 cut(s)	34, 1021
Eco130I	CCWWGG	2 cut(s)	888, 990
Eco24I	GRGCYC	2 cut(s)	36, 1023
Eco31I	GGTCTC	1 cut(s)	274
Eco47I	GGWCC	1 cut(s)	151
Eco53kI	GAGCTC	2 cut(s)	34, 1021
Eco81I	CCTNAGG	1 cut(s)	818
Eco88I	CYCGRG	2 cut(s)	74, 155
EcoICRI	GAGCTC	2 cut(s)	34, 1021
EcoNI	CCTNNNNNAGG	1 cut(s)	821
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRII	CCWGG	3 cut(s)	120, 560, 870
EcoT14I	CCWWGG	2 cut(s)	888, 990
EcoT38I	GRGCYC	2 cut(s)	36, 1023
ErhI	CCWWGG	2 cut(s)	888, 990
FaeI	CATG	5 cut(s)	268, 613, 676, 994, 1002
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FaqI	GGGAC	2 cut(s)	137, 458
FatI	CATG	5 cut(s)	264, 609, 672, 990, 998
FbaI	TGATCA	1 cut(s)	111
Fnu4HI	GCNGC	2 cut(s)	356, 876
FokI	GGATG	4 cut(s)	41, 584, 845, 1028
FriOI	GRGCYC	2 cut(s)	36, 1023
Fsp4HI	GCNGC	2 cut(s)	356, 876
GluI	GCNGC	2 cut(s)	356, 876
GsaI	CCCAGC	1 cut(s)	758
GsuI	CTGGAG	2 cut(s)	80, 371
HaeIII	GGCC	6 cut(s)	88, 210, 651, 684, 875, 983
Hin1II	CATG	5 cut(s)	268, 613, 676, 994, 1002
HindIII	AAGCTT	1 cut(s)	1008
HinfI	GANTC	3 cut(s)	7, 239, 669
HphI	GGTGA	3 cut(s)	283, 689, 745
Hpy166II	GTNNAC	1 cut(s)	814
Hpy188I	TCNGA	2 cut(s)	12, 668
Hpy188III	TCNNGA	4 cut(s)	76, 364, 548, 580
Hpy8I	GTNNAC	1 cut(s)	814
HpyAV	CCTTC	2 cut(s)	380, 817
HpyCH4III	ACNGT	5 cut(s)	185, 494, 638, 904, 927
HpyCH4IV	ACGT	1 cut(s)	697
HpyCH4V	TGCA	7 cut(s)	225, 317, 347, 524, 656, 897, 907
HpyF10VI	GCNNNNNNNGC	3 cut(s)	222, 541, 1049
HpyF3I	CTNAG	2 cut(s)	531, 818
HpySE526I	ACGT	1 cut(s)	697
Hsp92II	CATG	5 cut(s)	268, 613, 676, 994, 1002
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	7 cut(s)	45, 111, 640, 735, 855, 961, 1034
LmnI	GCTCC	2 cut(s)	221, 352
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	4 cut(s)	511, 562, 846, 976
MabI	ACCWGGT	1 cut(s)	560
MaeII	ACGT	1 cut(s)	697
MaeIII	GTNAC	6 cut(s)	185, 260, 698, 740, 800, 994
MalI	GATC	7 cut(s)	47, 113, 642, 737, 857, 963, 1036
MboI	GATC	7 cut(s)	45, 111, 640, 735, 855, 961, 1034
MboII	GAAGA	7 cut(s)	280, 289, 388, 775, 832, 859, 863
MfeI	CAATTG	2 cut(s)	220, 690
MflI	RGATCY	2 cut(s)	961, 1034
MhlI	GDGCHC	3 cut(s)	36, 599, 1023
MlsI	TGGCCA	1 cut(s)	684
MluCI	AATT	5 cut(s)	220, 335, 585, 622, 690
MluNI	TGGCCA	1 cut(s)	684
MlyI	GAGTC	2 cut(s)	233, 663
MmeI	TCCRAC	1 cut(s)	35
Mox20I	TGGCCA	1 cut(s)	684
MscI	TGGCCA	1 cut(s)	684
MseI	TTAA	2 cut(s)	195, 234
MslI	CAYNNNNRTG	1 cut(s)	902
Msp20I	TGGCCA	1 cut(s)	684
MspA1I	CMGCKG	1 cut(s)	878
MspR9I	CCNGG	3 cut(s)	122, 562, 872
MunI	CAATTG	2 cut(s)	220, 690
Mva1269I	GAATGC	2 cut(s)	207, 349
MvaI	CCWGG	3 cut(s)	122, 562, 872
MwoI	GCNNNNNNNGC	3 cut(s)	222, 541, 1049
NcoI	CCATGG	1 cut(s)	990
NdeII	GATC	7 cut(s)	45, 111, 640, 735, 855, 961, 1034
NlaIII	CATG	5 cut(s)	268, 613, 676, 994, 1002
NlaIV	GGNNCC	2 cut(s)	153, 598
NmeAIII	GCCGAG	1 cut(s)	930
NmuCI	GTSAC	2 cut(s)	740, 994
OliI	CACNNNNGTG	1 cut(s)	902
PaeR7I	CTCGAG	1 cut(s)	74
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	2 cut(s)	207, 349
PfoI	TCCNGGA	1 cut(s)	120
PkrI	GCNGC	2 cut(s)	357, 877
PleI	GAGTC	2 cut(s)	233, 663
PpsI	GAGTC	2 cut(s)	233, 663
PpuMI	RGGWCCY	1 cut(s)	151
Psp124BI	GAGCTC	2 cut(s)	36, 1023
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	3 cut(s)	120, 560, 870
PspFI	CCCAGC	1 cut(s)	754
PspGI	CCWGG	3 cut(s)	120, 560, 870
PspN4I	GGNNCC	2 cut(s)	153, 598
PspPI	GGNCC	3 cut(s)	151, 209, 650
PspPPI	RGGWCCY	1 cut(s)	151
PsuI	RGATCY	2 cut(s)	961, 1034
RsaI	GTAC	2 cut(s)	284, 662
RsaNI	GTAC	2 cut(s)	283, 661
RseI	CAYNNNNRTG	1 cut(s)	902
SacI	GAGCTC	2 cut(s)	36, 1023
SaqAI	TTAA	2 cut(s)	195, 234
SatI	GCNGC	2 cut(s)	356, 876
Sau3AI	GATC	7 cut(s)	45, 111, 640, 735, 855, 961, 1034
Sau96I	GGNCC	3 cut(s)	151, 209, 650
SchI	GAGTC	2 cut(s)	233, 663
ScrFI	CCNGG	3 cut(s)	122, 562, 872
SduI	GDGCHC	3 cut(s)	36, 599, 1023
SexAI	ACCWGGT	1 cut(s)	560
SfaNI	GCATC	4 cut(s)	511, 562, 846, 976
Sfr274I	CTCGAG	1 cut(s)	74
SinI	GGWCC	1 cut(s)	151
SlaI	CTCGAG	1 cut(s)	74
SmiMI	CAYNNNNRTG	1 cut(s)	902
SmlI	CTYRAG	3 cut(s)	23, 74, 548
SmoI	CTYRAG	3 cut(s)	23, 74, 548
Sse9I	AATT	5 cut(s)	220, 335, 585, 622, 690
SsiI	CCGC	4 cut(s)	243, 431, 876, 1032
SstI	GAGCTC	2 cut(s)	36, 1023
StyD4I	CCNGG	3 cut(s)	120, 560, 870
StyI	CCWWGG	2 cut(s)	888, 990
TaaI	ACNGT	5 cut(s)	185, 494, 638, 904, 927
TaiI	ACGT	1 cut(s)	700
TaqI	TCGA	5 cut(s)	36, 66, 75, 633, 921
TasI	AATT	5 cut(s)	220, 335, 585, 622, 690
TatI	WGTACW	2 cut(s)	282, 660
TauI	GCSGC	1 cut(s)	878
Tru1I	TTAA	2 cut(s)	195, 234
Tru9I	TTAA	2 cut(s)	195, 234
TscAI	CASTG	2 cut(s)	354, 907
TseFI	GTSAC	2 cut(s)	740, 994
TseI	GCWGC	1 cut(s)	355
Tsp45I	GTSAC	2 cut(s)	740, 994
TspDTI	ATGAA	1 cut(s)	635
TspGWI	ACGGA	2 cut(s)	431, 452
TspRI	CASTG	2 cut(s)	354, 907
VpaK11BI	GGWCC	1 cut(s)	151
XagI	CCTNNNNNAGG	1 cut(s)	821
XapI	RAATTY	1 cut(s)	622
XhoI	CTCGAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.