MD09G1073400.v1.1

Reversibly glycosylated polypeptide

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
5095873 .. 5098550
2678 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1073400.v1.1.491

Sequence Viewer

Length: 1071 bp
ATGGCTTCAGCGACACCCCTTTTGACGGATGAGCTCGACATTGTGATCCCGACCATCAGAAACCTCGACTTCCTCGAGATGTGGCGGCCGTTCCTGCAGCCCTACCACCTCATCATCGTCCAGGACGGTGATCCGACGAAGACCATCAAGGTCCCCGACGGCTTCGACTACGAGCTCTACAACCGCAACGACATTAACAGGATTCTGGGTCCGAGGTCGTCCTGCATTTCGTTCAAAGACTCTGCCTGCCGATGCTTTGGTTACATGGTCTCCAAGAAGAAGTACATCTTCACCATCGACGATGACTGCTTTGTTGCAACAGACCCATCTGGCAAACCAGTAAATGCACTGGAGCAACACATCAAGAACATCCTTTCACCATCCACCCCATTTTTCTTCAACACCTTGTATGATCCCTTCAGAGACGGTGCGGATTTTGTTCGTGGATACCCTTTCAGTCTCCGTGAGGGTGTTCCGACAGCTGTCTCTCACGGTCTCTGGCTCAACATCCCGGATTATGATGCACCAACACAGCTTGTGAAGCCACTTGAGAGAAACACCAGATTTGTGGATGCTGTTCTGACAATCCCAAAGGGCACATTGTTCCCAATGTGTGGGATGAACTTGGCTTTCGACCGCGACCTCATCGGCCCCGCAATGTACTTCGGACTCATGGGTGACGGTCAACCAATTGGACGTTACGACGATATGTGGGCTGGCTGGTGCACCAAGGTGATAACAGATCATTTGGGGCTTGGAGTGAAGACAGGGCTGCCATATATCTACCACAGCAAAGCCAGCAATCCATTTGTGAACCTGAGGAAGGAGTACAAGGGCATCTTCTGGCAGGAAGAGATCATCCCATTCTTCCAGTCTGCTGTCCTTCCCAAAGACTGCACCACCGTGCAAGCATGCTACATTGAGCTCTCCAAGCAGGTCAAGGAGAAGCTCAGCAAGGTCGATCCCTACTTCGACAAGCTGGCCGACGCCATGGTCACATGGATTGAAGCTTGGGATGAGCTCAACCCTAATGGTCCTGGAGCTAAACTGGCCAACGGCAAGGCCAAGTGA

Protein Analysis

357

Amino Acids

40.27

Weight (kDa)

5.63

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RGP PF03214 9 - 342 3.8e-176 Reversibly glycosylated polypeptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013849)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02230 AT5G15650
fragaria_vesca FvH4_6g46510
malus_domestica MD09G1073400.v1.1 MD17G1064900.v1.1
prunus_persica Prupe.3G249900_v2.0.a1
pyrus_communis pycom17g06490
rosa_chinensis RchiOBHm_Chr2g0165161
rosa_laevigata RLG00000021513
rosa_multiflora Rmu_sc0001097.1_g000042
rosa_roxburghii Rroxscaffold_2G00085980
rosa_rugosa Rorug02G0512800
rosa_samantha Rh2AG581000 Rh2BG592300 Rh2CG563000 Rh2DG602300
rosa_wichuraiana Rw2G048250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 992
Acc36I ACCTGC 1 cut(s) 925
AccB7I CCANNNNNTGG 1 cut(s) 614
AccII CGCG 1 cut(s) 639
AciI CCGC 5 cut(s) 85, 184, 431, 637, 654
AclWI GGATC 4 cut(s) 40, 125, 407, 956
AcoI YGGCCR 3 cut(s) 86, 981, 1050
AcuI CTGAAG 1 cut(s) 403
AcyI GRCGYC 1 cut(s) 987
AfaI GTAC 3 cut(s) 284, 662, 830
AfiI CCNNNNNNNGG 3 cut(s) 25, 614, 823
AgsI TTSAA 3 cut(s) 235, 400, 1007
AjnI CCWGG 2 cut(s) 120, 1036
AleI CACNNNNGTG 2 cut(s) 731, 902
Alw21I GWGCWC 5 cut(s) 36, 177, 728, 927, 1023
Alw26I GTCTC 5 cut(s) 274, 417, 464, 490, 500
Alw44I GTGCAC 1 cut(s) 724
AlwI GGATC 4 cut(s) 40, 125, 407, 956
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 5 cut(s) 86, 649, 981, 1050, 1062
ApaLI GTGCAC 1 cut(s) 724
ApeKI GCWGC 2 cut(s) 97, 772
ArsI GACNNNNNNTTYG 1 cut(s) 36
AspS9I GGNCC 4 cut(s) 151, 209, 650, 1034
AsuC2I CCSGG 1 cut(s) 512
AsuHPI GGTGA 5 cut(s) 140, 283, 369, 689, 745
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 3 cut(s) 151, 209, 1034
AxyI CCTNAGG 1 cut(s) 818
BaeGI GKGCMC 2 cut(s) 599, 728
BalI TGGCCA 1 cut(s) 1052
BanII GRGCYC 4 cut(s) 36, 177, 927, 1023
BarI GAAGNNNNNNTAC 2 cut(s) 401, 433
BbsI GAAGAC 2 cut(s) 146, 770
Bbv12I GWGCWC 5 cut(s) 36, 177, 728, 927, 1023
BbvI GCAGC 2 cut(s) 109, 759
BccI CCATC 5 cut(s) 62, 152, 302, 334, 388
BceAI ACGGC 2 cut(s) 73, 175
BciT130I CCWGG 2 cut(s) 122, 1038
BciVI GTATCC 1 cut(s) 440
BcnI CCSGG 1 cut(s) 512
BcoDI GTCTC 5 cut(s) 274, 417, 464, 490, 500
BfmI CTRYAG 1 cut(s) 95
BfuAI ACCTGC 1 cut(s) 925
BfuI GTATCC 1 cut(s) 440
BisI GCNGC 3 cut(s) 86, 98, 773
BlpI GCTNAGC 1 cut(s) 950
BlsI GCNGC 3 cut(s) 87, 99, 774
Bme1390I CCNGG 3 cut(s) 122, 512, 1038
Bme18I GGWCC 3 cut(s) 151, 209, 1034
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 4 cut(s) 151, 209, 650, 1034
BmiI GGNNCC 3 cut(s) 153, 210, 652
BmrFI CCNGG 3 cut(s) 122, 512, 1038
BmsI GCATC 4 cut(s) 242, 511, 562, 846
BoxI GACNNNNGTC 1 cut(s) 482
BpiI GAAGAC 2 cut(s) 146, 770
BpmI CTGGAG 2 cut(s) 371, 1059
Bpu1102I GCTNAGC 1 cut(s) 950
BpuEI CTTGAG 1 cut(s) 569
BpuMI CCSGG 1 cut(s) 512
BsaHI GRCGYC 1 cut(s) 987
BsaI GGTCTC 2 cut(s) 274, 500
BsaJI CCNNGG 3 cut(s) 212, 729, 990
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 3 cut(s) 25, 614, 823
Bse1I ACTGG 4 cut(s) 338, 354, 871, 1053
Bse21I CCTNAGG 1 cut(s) 818
Bse3DI GCAATG 1 cut(s) 663
BseBI CCWGG 2 cut(s) 122, 1038
BseDI CCNNGG 3 cut(s) 212, 729, 990
BseGI GGATG 8 cut(s) 34, 369, 380, 507, 577, 624, 858, 1021
BseLI CCNNNNNNNGG 3 cut(s) 25, 614, 823
BseMI GCAATG 1 cut(s) 663
BseMII CTCAG 2 cut(s) 809, 964
BseNI ACTGG 4 cut(s) 338, 354, 871, 1053
BseSI GKGCMC 2 cut(s) 599, 728
BseX3I CGGCCG 1 cut(s) 86
BseXI GCAGC 2 cut(s) 109, 759
BsgI GTGCAG 1 cut(s) 880
Bsh1236I CGCG 1 cut(s) 639
Bsh1285I CGRYCG 2 cut(s) 89, 637
BshFI GGCC 5 cut(s) 88, 651, 983, 1052, 1064
BsiEI CGRYCG 2 cut(s) 89, 637
BsiHKAI GWGCWC 5 cut(s) 36, 177, 728, 927, 1023
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 1 cut(s) 512
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 3 cut(s) 25, 614, 823
BsmAI GTCTC 5 cut(s) 274, 417, 464, 490, 500
BsmBI CGTCTC 1 cut(s) 417
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 5 cut(s) 88, 651, 983, 1052, 1064
Bso31I GGTCTC 2 cut(s) 274, 500
BsoBI CYCGRG 1 cut(s) 74
Bsp1286I GDGCHC 6 cut(s) 36, 177, 599, 728, 927, 1023
Bsp143I GATC 6 cut(s) 45, 130, 412, 742, 855, 961
Bsp1720I GCTNAGC 1 cut(s) 950
Bsp19I CCATGG 1 cut(s) 990
BspACI CCGC 5 cut(s) 85, 184, 431, 637, 654
BspANI GGCC 5 cut(s) 88, 651, 983, 1052, 1064
BspCNI CTCAG 2 cut(s) 810, 963
BspFNI CGCG 1 cut(s) 639
BspLI GGNNCC 3 cut(s) 153, 210, 652
BspMAI CTGCAG 1 cut(s) 99
BspMI ACCTGC 1 cut(s) 925
BspPI GGATC 4 cut(s) 40, 125, 407, 956
BspTNI GGTCTC 2 cut(s) 274, 500
BsrDI GCAATG 1 cut(s) 663
BsrI ACTGG 4 cut(s) 338, 354, 871, 1053
BssECI CCNNGG 3 cut(s) 212, 729, 990
BssMI GATC 6 cut(s) 45, 130, 412, 742, 855, 961
BssNI GRCGYC 1 cut(s) 987
BssT1I CCWWGG 2 cut(s) 729, 990
Bst2UI CCWGG 2 cut(s) 122, 1038
Bst4CI ACNGT 5 cut(s) 128, 428, 494, 683, 904
Bst6I CTCTTC 1 cut(s) 846
BstACI GRCGYC 1 cut(s) 987
BstC8I GCNNGC 6 cut(s) 247, 718, 799, 909, 913, 981
BstDEI CTNAG 2 cut(s) 818, 950
BstDSI CCRYGG 1 cut(s) 990
BstENI CCTNNNNNAGG 1 cut(s) 821
BstF5I GGATG 8 cut(s) 34, 369, 380, 507, 577, 624, 858, 1021
BstFNI CGCG 1 cut(s) 639
BstKTI GATC 6 cut(s) 48, 133, 415, 745, 858, 964
BstMAI GTCTC 5 cut(s) 274, 417, 464, 490, 500
BstMBI GATC 6 cut(s) 45, 130, 412, 742, 855, 961
BstMCI CGRYCG 2 cut(s) 89, 637
BstMWI GCNNNNNNNGC 5 cut(s) 94, 541, 798, 931, 1049
BstNI CCWGG 2 cut(s) 122, 1038
BstNSI RCATGY 1 cut(s) 915
BstPAI GACNNNNGTC 1 cut(s) 482
BstSCI CCNGG 3 cut(s) 120, 510, 1036
BstSFI CTRYAG 1 cut(s) 95
BstSLI GKGCMC 2 cut(s) 599, 728
BstUI CGCG 1 cut(s) 639
BstV1I GCAGC 2 cut(s) 109, 759
BstV2I GAAGAC 2 cut(s) 146, 770
BstXI CCANNNNNNTGG 1 cut(s) 568
BstZI CGGCCG 1 cut(s) 86
Bsu36I CCTNAGG 1 cut(s) 818
BsuI GTATCC 1 cut(s) 440
BsuRI GGCC 5 cut(s) 88, 651, 983, 1052, 1064
BtgI CCRYGG 1 cut(s) 990
BtsCI GGATG 8 cut(s) 34, 369, 380, 507, 577, 624, 858, 1021
BtsIMutI CAGTG 1 cut(s) 347
BveI ACCTGC 1 cut(s) 925
Cac8I GCNNGC 6 cut(s) 247, 718, 799, 909, 913, 981
Cfr13I GGNCC 4 cut(s) 151, 209, 650, 1034
CseI GACGC 1 cut(s) 995
Csp6I GTAC 3 cut(s) 283, 661, 829
CviAII CATG 5 cut(s) 265, 673, 912, 991, 999
CviQI GTAC 3 cut(s) 283, 661, 829
DdeI CTNAG 2 cut(s) 818, 950
DpnI GATC 6 cut(s) 47, 132, 414, 744, 857, 963
DpnII GATC 6 cut(s) 45, 130, 412, 742, 855, 961
DrdI GACNNNNNNGTC 1 cut(s) 992
DseDI GACNNNNNNGTC 1 cut(s) 992
EaeI YGGCCR 3 cut(s) 86, 981, 1050
EagI CGGCCG 1 cut(s) 86
Eam1104I CTCTTC 1 cut(s) 846
EarI CTCTTC 1 cut(s) 846
Ecl136II GAGCTC 4 cut(s) 34, 175, 925, 1021
EclXI CGGCCG 1 cut(s) 86
Eco130I CCWWGG 2 cut(s) 729, 990
Eco24I GRGCYC 4 cut(s) 36, 177, 927, 1023
Eco31I GGTCTC 2 cut(s) 274, 500
Eco47I GGWCC 3 cut(s) 151, 209, 1034
Eco52I CGGCCG 1 cut(s) 86
Eco53kI GAGCTC 4 cut(s) 34, 175, 925, 1021
Eco57I CTGAAG 1 cut(s) 403
Eco81I CCTNAGG 1 cut(s) 818
Eco88I CYCGRG 1 cut(s) 74
EcoICRI GAGCTC 4 cut(s) 34, 175, 925, 1021
EcoNI CCTNNNNNAGG 1 cut(s) 821
EcoO109I RGGNCCY 1 cut(s) 151
EcoRII CCWGG 2 cut(s) 120, 1036
EcoT14I CCWWGG 2 cut(s) 729, 990
EcoT38I GRGCYC 4 cut(s) 36, 177, 927, 1023
ErhI CCWWGG 2 cut(s) 729, 990
Esp3I CGTCTC 1 cut(s) 417
FaeI CATG 5 cut(s) 268, 676, 915, 994, 1002
FalI AAGNNNNNCTT 4 cut(s) 272, 304, 824, 856
FaqI GGGAC 1 cut(s) 137
FatI CATG 5 cut(s) 264, 672, 911, 990, 998
FauI CCCGC 1 cut(s) 661
Fnu4HI GCNGC 3 cut(s) 86, 98, 773
FokI GGATG 8 cut(s) 41, 356, 367, 494, 584, 631, 845, 1028
FriOI GRGCYC 4 cut(s) 36, 177, 927, 1023
Fsp4HI GCNGC 3 cut(s) 86, 98, 773
GluI GCNGC 3 cut(s) 86, 98, 773
GsuI CTGGAG 2 cut(s) 371, 1059
HaeIII GGCC 5 cut(s) 88, 651, 983, 1052, 1064
HapII CCGG 1 cut(s) 512
HgaI GACGC 1 cut(s) 995
Hin1I GRCGYC 1 cut(s) 987
Hin1II CATG 5 cut(s) 268, 676, 915, 994, 1002
HincII GTYRAC 1 cut(s) 686
HindII GTYRAC 1 cut(s) 686
HindIII AAGCTT 1 cut(s) 1008
HinfI GANTC 3 cut(s) 202, 239, 669
HpaII CCGG 1 cut(s) 512
HphI GGTGA 5 cut(s) 140, 283, 369, 689, 745
Hpy166II GTNNAC 3 cut(s) 686, 726, 814
Hpy188I TCNGA 7 cut(s) 59, 135, 213, 422, 477, 582, 668
Hpy188III TCNNGA 3 cut(s) 49, 76, 364
Hpy8I GTNNAC 3 cut(s) 686, 726, 814
Hpy99I CGWCG 5 cut(s) 139, 161, 302, 707, 989
HpyAV CCTTC 3 cut(s) 427, 817, 893
HpyCH4III ACNGT 5 cut(s) 128, 428, 494, 683, 904
HpyCH4IV ACGT 1 cut(s) 697
HpyCH4V TGCA 8 cut(s) 97, 225, 317, 347, 524, 726, 897, 907
HpyF10VI GCNNNNNNNGC 5 cut(s) 94, 541, 798, 931, 1049
HpyF3I CTNAG 2 cut(s) 818, 950
HpySE526I ACGT 1 cut(s) 697
Hsp92I GRCGYC 1 cut(s) 987
Hsp92II CATG 5 cut(s) 268, 676, 915, 994, 1002
Kzo9I GATC 6 cut(s) 45, 130, 412, 742, 855, 961
LmnI GCTCC 2 cut(s) 352, 1040
Lsp1109I GCAGC 2 cut(s) 109, 759
LweI GCATC 4 cut(s) 242, 511, 562, 846
MaeII ACGT 1 cut(s) 697
MaeIII GTNAC 4 cut(s) 260, 677, 698, 994
MalI GATC 6 cut(s) 47, 132, 414, 744, 857, 963
MboI GATC 6 cut(s) 45, 130, 412, 742, 855, 961
MboII GAAGA 8 cut(s) 151, 280, 289, 388, 775, 832, 859, 863
MfeI CAATTG 1 cut(s) 690
MhlI GDGCHC 6 cut(s) 36, 177, 599, 728, 927, 1023
MlsI TGGCCA 1 cut(s) 1052
MluCI AATT 1 cut(s) 690
MluNI TGGCCA 1 cut(s) 1052
MlyI GAGTC 2 cut(s) 233, 663
MmeI TCCRAC 2 cut(s) 158, 500
MnlI CCTC 7 cut(s) 74, 83, 119, 207, 460, 653, 813
Mox20I TGGCCA 1 cut(s) 1052
MscI TGGCCA 1 cut(s) 1052
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 2 cut(s) 731, 902
Msp20I TGGCCA 1 cut(s) 1052
MspA1I CMGCKG 1 cut(s) 482
MspI CCGG 1 cut(s) 512
MspR9I CCNGG 3 cut(s) 122, 512, 1038
MunI CAATTG 1 cut(s) 690
MvaI CCWGG 2 cut(s) 122, 1038
MvnI CGCG 1 cut(s) 639
MwoI GCNNNNNNNGC 5 cut(s) 94, 541, 798, 931, 1049
NciI CCSGG 1 cut(s) 512
NcoI CCATGG 1 cut(s) 990
NdeII GATC 6 cut(s) 45, 130, 412, 742, 855, 961
NlaIII CATG 5 cut(s) 268, 676, 915, 994, 1002
NlaIV GGNNCC 3 cut(s) 153, 210, 652
NmuCI GTSAC 2 cut(s) 677, 994
NspI RCATGY 1 cut(s) 915
OliI CACNNNNGTG 2 cut(s) 731, 902
PaeI GCATGC 1 cut(s) 915
PaeR7I CTCGAG 1 cut(s) 74
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PfeI GAWTC 1 cut(s) 202
PflMI CCANNNNNTGG 1 cut(s) 614
PfoI TCCNGGA 3 cut(s) 120, 510, 1036
PkrI GCNGC 3 cut(s) 87, 99, 774
PleI GAGTC 2 cut(s) 233, 663
PpsI GAGTC 2 cut(s) 233, 663
PpuMI RGGWCCY 1 cut(s) 151
PshAI GACNNNNGTC 1 cut(s) 482
Psp124BI GAGCTC 4 cut(s) 36, 177, 927, 1023
Psp5II RGGWCCY 1 cut(s) 151
Psp6I CCWGG 2 cut(s) 120, 1036
PspGI CCWGG 2 cut(s) 120, 1036
PspN4I GGNNCC 3 cut(s) 153, 210, 652
PspPI GGNCC 4 cut(s) 151, 209, 650, 1034
PspPPI RGGWCCY 1 cut(s) 151
PstI CTGCAG 1 cut(s) 99
PvuII CAGCTG 1 cut(s) 482
RsaI GTAC 3 cut(s) 284, 662, 830
RsaNI GTAC 3 cut(s) 283, 661, 829
RseI CAYNNNNRTG 2 cut(s) 731, 902
SacI GAGCTC 4 cut(s) 36, 177, 927, 1023
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 3 cut(s) 86, 98, 773
Sau3AI GATC 6 cut(s) 45, 130, 412, 742, 855, 961
Sau96I GGNCC 4 cut(s) 151, 209, 650, 1034
SchI GAGTC 2 cut(s) 233, 663
ScrFI CCNGG 3 cut(s) 122, 512, 1038
SduI GDGCHC 6 cut(s) 36, 177, 599, 728, 927, 1023
SfaNI GCATC 4 cut(s) 242, 511, 562, 846
SfcI CTRYAG 1 cut(s) 95
Sfr274I CTCGAG 1 cut(s) 74
SinI GGWCC 3 cut(s) 151, 209, 1034
SlaI CTCGAG 1 cut(s) 74
SmiMI CAYNNNNRTG 2 cut(s) 731, 902
SmlI CTYRAG 2 cut(s) 74, 548
SmoI CTYRAG 2 cut(s) 74, 548
SphI GCATGC 1 cut(s) 915
Sse9I AATT 1 cut(s) 690
SsiI CCGC 5 cut(s) 85, 184, 431, 637, 654
SstI GAGCTC 4 cut(s) 36, 177, 927, 1023
StyD4I CCNGG 3 cut(s) 120, 510, 1036
StyI CCWWGG 2 cut(s) 729, 990
TaaI ACNGT 5 cut(s) 128, 428, 494, 683, 904
TaiI ACGT 1 cut(s) 700
TaqI TCGA 8 cut(s) 36, 66, 75, 165, 297, 633, 960, 972
TasI AATT 1 cut(s) 690
TatI WGTACW 3 cut(s) 282, 660, 828
TauI GCSGC 1 cut(s) 88
TfiI GAWTC 1 cut(s) 202
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 2 cut(s) 677, 994
TseI GCWGC 2 cut(s) 97, 772
Tsp45I GTSAC 2 cut(s) 677, 994
TspDTI ATGAA 1 cut(s) 635
TspGWI ACGGA 2 cut(s) 41, 452
TspRI CASTG 1 cut(s) 354
Van91I CCANNNNNTGG 1 cut(s) 614
VneI GTGCAC 1 cut(s) 724
VpaK11BI GGWCC 3 cut(s) 151, 209, 1034
XagI CCTNNNNNAGG 1 cut(s) 821
XceI RCATGY 1 cut(s) 915
XhoI CTCGAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.