Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013849

Physical Location & Seq

Genomic Coordinates Forward (+)

5092140 .. 5095302

Gene Structure 3163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGTTGAGCCGGCGAATACTGTTGGTCTTCCGGTGAACCCGACTCCGTTGCTGAAAGATGAGCTCGATATCGTGATTCCGACTATCAGAAACCTCGATTTCCTCGAGATGTGGAGGCCTTTTCTTCAGCCTTACCATCTGATCATCGTCCAGGACGGAGATCCATCGAAGAAGATCCATGTCCCTGAAGGTTACGACTACGAGCTCTACAACAGGAACGACATTAACCGAATCCTCGGACCTAAGGCTTCTTGTATCTCGTTTAAGGATTCTGCTTGTCGATGCTTTGGGTACATGGTGTCTAAGAAGAAGTATATCTTCACCATTGATGACGATTGCTTCGTTGCCAAGGATCCATCAGGCAAAGCAGTGAACGCTCTTGAGCAACACATCAAGAACCTTCTCTGCCCATCGTCTCCCTTTTTCTTCAACACCTTGTATGATCCTTACCGTGAAGGTGCTGATTTCGTCCGTGGATACCCTTTCAGTCTCCGTGAAGGTGTTTCCACTGCTGTTTCCCATGGTCTTTGGCTCAACATCCCTGACTACGATGCCCCGACCCAACTCGTGAAGCCTAAGGAGAGGAACACCAGGTATGTGGATGCTGTCATGACCATCCCAAAGGGAACACTTTTCCCAATGTGTGGTATGAACTTGGCTTTTGACCGTGATTTGATTGGCCCGGCTATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTCGTTACGACGATATGTGGGCTGGTTGGTGCATCAAGGTGATCTGTGACCACTTGAGCTTGGGAGTGAAGACCGGTTTACCGTATATCTACCACAGCAAAGCGAGCAACCCTTTTGTTAACCTGAAGAAGGAATACAAGGGAATCTTCTGGCAGGAGGAGATCATTCCGTTCTTCCAGAACGCAAAGCTATCGAAAGAAGCAGTAACTGTTCAGCAATGCTACATTGAGCTCTCAAAGATGGTCAAGGAGAAGTTGAGCTCCTTAGACCCGTACTTTGACAAGCTTGCAGATGCCATGGTTACATGGATTGAAGCTTGGGATGAGCTTAACCCACCAGCAGCCAGTGGCAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0003674 GO:0003735 GO:0003824 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005795 GO:0005829 GO:0005840 GO:0005844 GO:0005975 GO:0005996 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009225 GO:0009555 GO:0009628 GO:0009651 GO:0009832 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0016760 GO:0016853 GO:0016866 GO:0019321 GO:0019322 GO:0019566 GO:0019567 GO:0022626 GO:0030312 GO:0031090 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032991 GO:0033356 GO:0034641 GO:0035251 GO:0042221 GO:0042546 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046364 GO:0046483 GO:0046527 GO:0046686 GO:0048229 GO:0048856 GO:0050896 GO:0052691 GO:0055086 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0098588 GO:0098791 GO:0098805 GO:1901135 GO:1901360 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

RGP

Protein Analysis

360

Amino Acids

40.89

Weight (kDa)

5.76

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RGP	PF03214	18 - 352	5.1e-180	Reversibly glycosylated polypeptide

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02230 AT5G15650
fragaria_vesca	FvH4_6g46510
malus_domestica	MD09G1073400.v1.1 MD17G1064900.v1.1
prunus_persica	Prupe.3G249900_v2.0.a1
pyrus_communis	pycom17g06490
rosa_chinensis	RchiOBHm_Chr2g0165161
rosa_laevigata	RLG00000021513
rosa_multiflora	Rmu_sc0001097.1_g000042
rosa_roxburghii	Rroxscaffold_2G00085980
rosa_rugosa	Rorug02G0512800
rosa_samantha	Rh2AG581000 Rh2BG592300 Rh2CG563000 Rh2DG602300
rosa_wichuraiana	Rw2G048250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	644
AclWI	GGATC	5 cut(s)	155, 169, 347, 360, 437
AcuI	CTGAAG	3 cut(s)	110, 207, 869
AfaI	GTAC	3 cut(s)	293, 692, 998
AfiI	CCNNNNNNNGG	2 cut(s)	644, 853
AgeI	ACCGGT	1 cut(s)	797
AgsI	TTSAA	2 cut(s)	430, 1037
AjnI	CCWGG	2 cut(s)	150, 590
Alw21I	GWGCWC	4 cut(s)	66, 207, 957, 986
Alw26I	GTCTC	3 cut(s)	420, 494, 704
AlwI	GGATC	5 cut(s)	155, 169, 347, 360, 437
AlwNI	CAGNNNCTG	1 cut(s)	932
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	2 cut(s)	116, 679
ApeKI	GCWGC	1 cut(s)	1064
ArsI	GACNNNNNNTTYG	4 cut(s)	323, 355, 983, 1015
AsiGI	ACCGGT	1 cut(s)	797
AspS9I	GGNCC	2 cut(s)	239, 680
AsuC2I	CCSGG	1 cut(s)	683
AsuHPI	GGTGA	4 cut(s)	46, 313, 719, 775
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	239
AxyI	CCTNAGG	2 cut(s)	243, 576
BamHI	GGATCC	1 cut(s)	352
BanII	GRGCYC	4 cut(s)	66, 207, 957, 986
BarI	GAAGNNNNNNTAC	2 cut(s)	842, 874
BauI	CACGAG	1 cut(s)	566
BbsI	GAAGAC	2 cut(s)	20, 800
Bbv12I	GWGCWC	4 cut(s)	66, 207, 957, 986
BbvI	GCAGC	1 cut(s)	1076
BccI	CCATC	7 cut(s)	144, 172, 364, 418, 623, 704, 958
BcgI	CGANNNNNNTGC	4 cut(s)	31, 65, 897, 931
BciT130I	CCWGG	2 cut(s)	152, 592
BciVI	GTATCC	1 cut(s)	470
BclI	TGATCA	1 cut(s)	141
BcnI	CCSGG	1 cut(s)	683
BcoDI	GTCTC	3 cut(s)	420, 494, 704
BfuI	GTATCC	1 cut(s)	470
BisI	GCNGC	1 cut(s)	1065
BlsI	GCNGC	1 cut(s)	1066
Bme1390I	CCNGG	3 cut(s)	152, 592, 683
Bme18I	GGWCC	1 cut(s)	239
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	2 cut(s)	239, 680
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	3 cut(s)	152, 592, 683
BmsI	GCATC	5 cut(s)	272, 541, 592, 765, 1006
BpiI	GAAGAC	2 cut(s)	20, 800
BpuEI	CTTGAG	2 cut(s)	401, 799
BpuMI	CCSGG	1 cut(s)	683
BsaI	GGTCTC	1 cut(s)	704
BsaJI	CCNNGG	5 cut(s)	235, 348, 472, 520, 1020
BsaWI	WCCGGW	2 cut(s)	31, 797
Bsc4I	CCNNNNNNNGG	2 cut(s)	644, 853
Bse118I	RCCGGY	2 cut(s)	10, 797
Bse1I	ACTGG	1 cut(s)	1068
Bse21I	CCTNAGG	2 cut(s)	243, 576
Bse3DI	GCAATG	1 cut(s)	947
BseBI	CCWGG	2 cut(s)	152, 592
BseDI	CCNNGG	5 cut(s)	235, 348, 472, 520, 1020
BseGI	GGATG	4 cut(s)	537, 607, 615, 1051
BseLI	CCNNNNNNNGG	2 cut(s)	644, 853
BseMI	GCAATG	1 cut(s)	947
BseNI	ACTGG	1 cut(s)	1068
BseRI	GAGGAG	1 cut(s)	896
BseXI	GCAGC	1 cut(s)	1076
BshFI	GGCC	2 cut(s)	118, 681
BshTI	ACCGGT	1 cut(s)	797
BsiHKAI	GWGCWC	4 cut(s)	66, 207, 957, 986
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	4 cut(s)	11, 32, 683, 798
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	2 cut(s)	644, 853
BsmAI	GTCTC	3 cut(s)	420, 494, 704
BsmBI	CGTCTC	1 cut(s)	420
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	2 cut(s)	118, 681
Bso31I	GGTCTC	1 cut(s)	704
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	4 cut(s)	66, 207, 957, 986
Bsp143I	GATC	7 cut(s)	141, 160, 174, 352, 442, 765, 885
Bsp19I	CCATGG	2 cut(s)	520, 1020
BspANI	GGCC	2 cut(s)	118, 681
BspHI	TCATGA	1 cut(s)	609
BspLI	GGNNCC	1 cut(s)	354
BspPI	GGATC	5 cut(s)	155, 169, 347, 360, 437
BspTNI	GGTCTC	1 cut(s)	704
BsrDI	GCAATG	1 cut(s)	947
BsrFI	RCCGGY	2 cut(s)	10, 797
BsrI	ACTGG	1 cut(s)	1068
BssAI	RCCGGY	2 cut(s)	10, 797
BssECI	CCNNGG	5 cut(s)	235, 348, 472, 520, 1020
BssMI	GATC	7 cut(s)	141, 160, 174, 352, 442, 765, 885
BssSI	CACGAG	1 cut(s)	566
BssT1I	CCWWGG	3 cut(s)	348, 520, 1020
Bst2BI	CACGAG	1 cut(s)	566
Bst2UI	CCWGG	2 cut(s)	152, 592
Bst4CI	ACNGT	5 cut(s)	22, 452, 668, 807, 934
BstC8I	GCNNGC	3 cut(s)	12, 829, 1011
BstDEI	CTNAG	4 cut(s)	243, 303, 576, 988
BstDSI	CCRYGG	3 cut(s)	472, 520, 1020
BstENI	CCTNNNNNAGG	1 cut(s)	851
BstF5I	GGATG	4 cut(s)	537, 607, 615, 1051
BstKTI	GATC	7 cut(s)	144, 163, 177, 355, 445, 768, 888
BstMAI	GTCTC	3 cut(s)	420, 494, 704
BstMBI	GATC	7 cut(s)	141, 160, 174, 352, 442, 765, 885
BstMWI	GCNNNNNNNGC	2 cut(s)	374, 828
BstNI	CCWGG	2 cut(s)	152, 592
BstSCI	CCNGG	3 cut(s)	150, 590, 681
BstV1I	GCAGC	1 cut(s)	1076
BstV2I	GAAGAC	2 cut(s)	20, 800
BstX2I	RGATCY	3 cut(s)	160, 174, 352
BstXI	CCANNNNNNTGG	1 cut(s)	598
BstYI	RGATCY	3 cut(s)	160, 174, 352
Bsu36I	CCTNAGG	2 cut(s)	243, 576
BsuI	GTATCC	1 cut(s)	470
BsuRI	GGCC	2 cut(s)	118, 681
BtgI	CCRYGG	3 cut(s)	472, 520, 1020
BtsCI	GGATG	4 cut(s)	537, 607, 615, 1051
BtsI	GCAGTG	2 cut(s)	375, 507
BtsIMutI	CAGTG	3 cut(s)	375, 507, 1075
Cac8I	GCNNGC	3 cut(s)	12, 829, 1011
CaiI	CAGNNNCTG	1 cut(s)	932
CciI	TCATGA	1 cut(s)	609
Cfr10I	RCCGGY	2 cut(s)	10, 797
Cfr13I	GGNCC	2 cut(s)	239, 680
CsiI	ACCWGGT	1 cut(s)	590
Csp6I	GTAC	3 cut(s)	292, 691, 997
CspAI	ACCGGT	1 cut(s)	797
CviAII	CATG	7 cut(s)	179, 295, 521, 610, 703, 1021, 1029
CviQI	GTAC	3 cut(s)	292, 691, 997
DdeI	CTNAG	4 cut(s)	243, 303, 576, 988
DpnI	GATC	7 cut(s)	143, 162, 176, 354, 444, 767, 887
DpnII	GATC	7 cut(s)	141, 160, 174, 352, 442, 765, 885
Ecl136II	GAGCTC	4 cut(s)	64, 205, 955, 984
Eco130I	CCWWGG	3 cut(s)	348, 520, 1020
Eco147I	AGGCCT	1 cut(s)	118
Eco24I	GRGCYC	4 cut(s)	66, 207, 957, 986
Eco31I	GGTCTC	1 cut(s)	704
Eco32I	GATATC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	239
Eco53kI	GAGCTC	4 cut(s)	64, 205, 955, 984
Eco57I	CTGAAG	3 cut(s)	110, 207, 869
Eco81I	CCTNAGG	2 cut(s)	243, 576
Eco88I	CYCGRG	1 cut(s)	104
EcoICRI	GAGCTC	4 cut(s)	64, 205, 955, 984
EcoNI	CCTNNNNNAGG	1 cut(s)	851
EcoRII	CCWGG	2 cut(s)	150, 590
EcoRV	GATATC	1 cut(s)	70
EcoT14I	CCWWGG	3 cut(s)	348, 520, 1020
EcoT38I	GRGCYC	4 cut(s)	66, 207, 957, 986
ErhI	CCWWGG	3 cut(s)	348, 520, 1020
Esp3I	CGTCTC	1 cut(s)	420
FaeI	CATG	7 cut(s)	182, 298, 524, 613, 706, 1024, 1032
FalI	AAGNNNNNCTT	4 cut(s)	302, 334, 854, 886
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	7 cut(s)	178, 294, 520, 609, 702, 1020, 1028
FbaI	TGATCA	1 cut(s)	141
Fnu4HI	GCNGC	1 cut(s)	1065
FokI	GGATG	4 cut(s)	524, 602, 614, 1058
FriOI	GRGCYC	4 cut(s)	66, 207, 957, 986
Fsp4HI	GCNGC	1 cut(s)	1065
GluI	GCNGC	1 cut(s)	1065
HaeIII	GGCC	2 cut(s)	118, 681
HapII	CCGG	4 cut(s)	11, 32, 683, 798
Hin1II	CATG	7 cut(s)	182, 298, 524, 613, 706, 1024, 1032
HincII	GTYRAC	1 cut(s)	844
HindII	GTYRAC	1 cut(s)	844
HindIII	AAGCTT	3 cut(s)	1007, 1038, 1077
HinfI	GANTC	5 cut(s)	43, 76, 231, 269, 867
HpaI	GTTAAC	1 cut(s)	844
HpaII	CCGG	4 cut(s)	11, 32, 683, 798
HphI	GGTGA	4 cut(s)	46, 313, 719, 775
Hpy166II	GTNNAC	4 cut(s)	37, 373, 803, 844
Hpy188I	TCNGA	4 cut(s)	81, 89, 141, 239
Hpy188III	TCNNGA	7 cut(s)	73, 106, 380, 394, 568, 610, 901
Hpy8I	GTNNAC	4 cut(s)	37, 373, 803, 844
Hpy99I	CGWCG	1 cut(s)	737
HpyAV	CCTTC	5 cut(s)	182, 410, 449, 491, 847
HpyCH4III	ACNGT	5 cut(s)	22, 452, 668, 807, 934
HpyCH4V	TGCA	2 cut(s)	756, 1013
HpyF10VI	GCNNNNNNNGC	2 cut(s)	374, 828
HpyF3I	CTNAG	4 cut(s)	243, 303, 576, 988
Hsp92II	CATG	7 cut(s)	182, 298, 524, 613, 706, 1024, 1032
KroI	GCCGGC	1 cut(s)	10
KroNI	GCCGGC	1 cut(s)	12
Ksp22I	TGATCA	1 cut(s)	141
KspAI	GTTAAC	1 cut(s)	844
Kzo9I	GATC	7 cut(s)	141, 160, 174, 352, 442, 765, 885
LmnI	GCTCC	1 cut(s)	989
Lsp1109I	GCAGC	1 cut(s)	1076
LweI	GCATC	5 cut(s)	272, 541, 592, 765, 1006
MabI	ACCWGGT	1 cut(s)	590
MaeIII	GTNAC	5 cut(s)	191, 728, 770, 928, 1024
MalI	GATC	7 cut(s)	143, 162, 176, 354, 444, 767, 887
MboI	GATC	7 cut(s)	141, 160, 174, 352, 442, 765, 885
MflI	RGATCY	3 cut(s)	160, 174, 352
MhlI	GDGCHC	4 cut(s)	66, 207, 957, 986
MlyI	GAGTC	1 cut(s)	37
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	6 cut(s)	104, 108, 113, 245, 576, 874
MroNI	GCCGGC	1 cut(s)	10
MseI	TTAA	4 cut(s)	225, 264, 843, 1053
MslI	CAYNNNNRTG	1 cut(s)	761
MspI	CCGG	4 cut(s)	11, 32, 683, 798
MspR9I	CCNGG	3 cut(s)	152, 592, 683
MvaI	CCWGG	2 cut(s)	152, 592
MwoI	GCNNNNNNNGC	2 cut(s)	374, 828
NaeI	GCCGGC	1 cut(s)	12
NciI	CCSGG	1 cut(s)	683
NcoI	CCATGG	2 cut(s)	520, 1020
NdeII	GATC	7 cut(s)	141, 160, 174, 352, 442, 765, 885
NgoMIV	GCCGGC	1 cut(s)	10
NlaIII	CATG	7 cut(s)	182, 298, 524, 613, 706, 1024, 1032
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	1 cut(s)	770
PaeR7I	CTCGAG	1 cut(s)	104
PagI	TCATGA	1 cut(s)	609
PceI	AGGCCT	1 cut(s)	118
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 339
PdiI	GCCGGC	1 cut(s)	12
PfeI	GAWTC	4 cut(s)	76, 231, 269, 867
PflMI	CCANNNNNTGG	1 cut(s)	644
PfoI	TCCNGGA	1 cut(s)	150
PinAI	ACCGGT	1 cut(s)	797
PkrI	GCNGC	1 cut(s)	1066
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
Psp124BI	GAGCTC	4 cut(s)	66, 207, 957, 986
Psp6I	CCWGG	2 cut(s)	150, 590
PspGI	CCWGG	2 cut(s)	150, 590
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	2 cut(s)	239, 680
PstNI	CAGNNNCTG	1 cut(s)	932
PsuI	RGATCY	3 cut(s)	160, 174, 352
RsaI	GTAC	3 cut(s)	293, 692, 998
RsaNI	GTAC	3 cut(s)	292, 691, 997
RseI	CAYNNNNRTG	1 cut(s)	761
SacI	GAGCTC	4 cut(s)	66, 207, 957, 986
SaqAI	TTAA	4 cut(s)	225, 264, 843, 1053
SatI	GCNGC	1 cut(s)	1065
Sau3AI	GATC	7 cut(s)	141, 160, 174, 352, 442, 765, 885
Sau96I	GGNCC	2 cut(s)	239, 680
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	3 cut(s)	152, 592, 683
SduI	GDGCHC	4 cut(s)	66, 207, 957, 986
SexAI	ACCWGGT	1 cut(s)	590
SfaNI	GCATC	5 cut(s)	272, 541, 592, 765, 1006
Sfr274I	CTCGAG	1 cut(s)	104
SinI	GGWCC	1 cut(s)	239
SlaI	CTCGAG	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	761
SmlI	CTYRAG	3 cut(s)	104, 380, 778
SmoI	CTYRAG	3 cut(s)	104, 380, 778
SseBI	AGGCCT	1 cut(s)	118
SstI	GAGCTC	4 cut(s)	66, 207, 957, 986
StuI	AGGCCT	1 cut(s)	118
StyD4I	CCNGG	3 cut(s)	150, 590, 681
StyI	CCWWGG	3 cut(s)	348, 520, 1020
TaaI	ACNGT	5 cut(s)	22, 452, 668, 807, 934
TaqI	TCGA	6 cut(s)	66, 96, 105, 167, 280, 917
TatI	WGTACW	1 cut(s)	690
TfiI	GAWTC	4 cut(s)	76, 231, 269, 867
Tru1I	TTAA	4 cut(s)	225, 264, 843, 1053
Tru9I	TTAA	4 cut(s)	225, 264, 843, 1053
TscAI	CASTG	3 cut(s)	375, 514, 1075
TseFI	GTSAC	1 cut(s)	770
TseI	GCWGC	1 cut(s)	1064
Tsp45I	GTSAC	1 cut(s)	770
TspDTI	ATGAA	1 cut(s)	665
TspGWI	ACGGA	5 cut(s)	36, 171, 461, 482, 882
TspRI	CASTG	3 cut(s)	375, 514, 1075
Van91I	CCANNNNNTGG	1 cut(s)	644
VpaK11BI	GGWCC	1 cut(s)	239
XagI	CCTNNNNNAGG	1 cut(s)	851
XhoI	CTCGAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.