Rw2G048250

Alpha-1,4-glucan-protein synthase (UDP-forming)

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
75719045 .. 75720983
1939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G048250.1

Sequence Viewer

Length: 1059 bp
ATGGCGACTCCGACCCATTTGCTTAAGGATGAGCTCGACATTGTGATCCCTACCATACGAAACCTCGATTTCCTCGAGATGTGGAGGCCATTCCTCCAGCCCTACCACTTGATCATTGTCCAGGACGGCGACCCCACCAAGACCATCAAGGTCCCCGAGGGATTTGACTATGAACTCTACAACCGTAACGACATTAACAGAATGCTTGGCCCTCGCTCCAATTGCATTTCCTTTAAGGACTCCGCTTGCCGTTGCTTCGGTTACATGGTCTCCAAGAAGAAGTACATCTTCACCATTGACGATGATTGCTTTGTTGCACAAGACCCATCTGGCAAATTAGTGAATGCACTGGAGCAGCACATCAAGAACCTTCTTTGCCCATCCACCCCATTTTTCTTCAACACCCTCTATGACCCTTTCAGGGAGGGTGCGGATTTCGTCCGTGGATACCCTTTCAGTCTCCGTGAGGGTGTCCCAACTGCTGTTTCTCATGGTCTTTGGCTCAATATCCCCGATTATGATGCACCTACTCAGCTTGTGAAGCCTCTTGAGAGGAACACCAGGTATGTGGATGCTGTTCTGACAATTCCAAAGGGCACCCTGTTCCCCATGTGTGGTATGAATTTGGCTTTCGACCGTGATCTCATTGGCCCTGCAATGTACTTCGGACTCATGGGTGATGGCCAGCCAATTGGACGTTACGATGATATGTGGGCTGGCTGGTGTATCAAGGTGATCTGTGACCATTTGGGGCTGGGAGTGAAGACAGGTCTGCCTTATATCTATCACAGCAAGGCAAGTAACCCATTTGTGAACCTGAGGAAGGAATACAAAGGCATCTTCTGGCAGGAAGAGATCATCCCTTTCTTTCAGGCCGCTGTTCTCCCCAAGGACTGCACCACTGTGCAAGCCTGCTACATCGAACTGTCCAAGCAGGTGAAGGACAAGCTCGGCAAGGTAGATCCCTACTTCGACAAGCTGGCCGATGCCATGGTCACATGGATTGAAGCTTGGGATGAGCTCAACCCAAGCGGACCTGGTGCTAAAATTGCAAAATAA

Protein Analysis

352

Amino Acids

40.08

Weight (kDa)

5.74

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RGP PF03214 8 - 342 9.7e-179 Reversibly glycosylated polypeptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013849)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02230 AT5G15650
fragaria_vesca FvH4_6g46510
malus_domestica MD09G1073400.v1.1 MD17G1064900.v1.1
prunus_persica Prupe.3G249900_v2.0.a1
pyrus_communis pycom17g06490
rosa_chinensis RchiOBHm_Chr2g0165161
rosa_laevigata RLG00000021513
rosa_multiflora Rmu_sc0001097.1_g000042
rosa_roxburghii Rroxscaffold_2G00085980
rosa_rugosa Rorug02G0512800
rosa_samantha Rh2AG581000 Rh2BG592300 Rh2CG563000 Rh2DG602300
rosa_wichuraiana Rw2G048250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 925
Acc36I ACCTGC 1 cut(s) 925
AccB1I GGYRCC 1 cut(s) 596
AciI CCGC 4 cut(s) 243, 431, 876, 1032
AclWI GGATC 2 cut(s) 40, 956
AcoI YGGCCR 2 cut(s) 682, 981
AcsI RAATTY 1 cut(s) 622
AfaI GTAC 2 cut(s) 284, 662
AfiI CCNNNNNNNGG 3 cut(s) 421, 614, 823
AflII CTTAAG 1 cut(s) 23
AgsI TTSAA 2 cut(s) 400, 1007
AjnI CCWGG 3 cut(s) 120, 560, 1036
AjuI GAANNNNNNNTTGG 2 cut(s) 469, 501
AleI CACNNNNGTG 1 cut(s) 902
AluBI AGCT 6 cut(s) 34, 535, 949, 979, 1010, 1021
AluI AGCT 6 cut(s) 34, 535, 949, 979, 1010, 1021
Alw21I GWGCWC 2 cut(s) 36, 1023
Alw26I GTCTC 2 cut(s) 274, 464
AlwI GGATC 2 cut(s) 40, 956
Ama87I CYCGRG 2 cut(s) 74, 155
AoxI GGCC 6 cut(s) 86, 208, 649, 682, 873, 981
ApeKI GCWGC 1 cut(s) 355
ApoI RAATTY 1 cut(s) 622
AspS9I GGNCC 4 cut(s) 151, 209, 650, 1034
AsuHPI GGTGA 4 cut(s) 283, 689, 745, 949
AvaI CYCGRG 2 cut(s) 74, 155
AvaII GGWCC 2 cut(s) 151, 1034
AxyI CCTNAGG 1 cut(s) 818
BaeGI GKGCMC 1 cut(s) 599
BalI TGGCCA 1 cut(s) 684
BanI GGYRCC 1 cut(s) 596
BanII GRGCYC 2 cut(s) 36, 1023
BbsI GAAGAC 1 cut(s) 770
Bbv12I GWGCWC 2 cut(s) 36, 1023
BbvI GCAGC 1 cut(s) 367
BccI CCATC 4 cut(s) 152, 334, 388, 674
BceAI ACGGC 2 cut(s) 142, 234
BcgI CGANNNNNNTGC 3 cut(s) 35, 503, 537
BciT130I CCWGG 3 cut(s) 122, 562, 1038
BciVI GTATCC 1 cut(s) 440
BclI TGATCA 1 cut(s) 111
BcoDI GTCTC 2 cut(s) 274, 464
BfrI CTTAAG 1 cut(s) 23
BfuAI ACCTGC 1 cut(s) 925
BfuI GTATCC 1 cut(s) 440
BisI GCNGC 2 cut(s) 356, 876
BlsI GCNGC 2 cut(s) 357, 877
Bme1390I CCNGG 3 cut(s) 122, 562, 1038
Bme18I GGWCC 2 cut(s) 151, 1034
BmeT110I CYCGRG 2 cut(s) 74, 155
BmgT120I GGNCC 4 cut(s) 151, 209, 650, 1034
BmiI GGNNCC 2 cut(s) 153, 598
BmrFI CCNGG 3 cut(s) 122, 562, 1038
BmsI GCATC 4 cut(s) 511, 562, 846, 976
BpiI GAAGAC 1 cut(s) 770
BpmI CTGGAG 2 cut(s) 80, 371
BpuEI CTTGAG 1 cut(s) 569
BsaI GGTCTC 1 cut(s) 274
BsaJI CCNNGG 4 cut(s) 156, 442, 888, 990
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 3 cut(s) 421, 614, 823
Bse1I ACTGG 1 cut(s) 354
Bse21I CCTNAGG 1 cut(s) 818
Bse3DI GCAATG 1 cut(s) 663
BseBI CCWGG 3 cut(s) 122, 562, 1038
BseDI CCNNGG 4 cut(s) 156, 442, 888, 990
BseGI GGATG 5 cut(s) 34, 380, 577, 858, 1021
BseLI CCNNNNNNNGG 3 cut(s) 421, 614, 823
BseMI GCAATG 1 cut(s) 663
BseMII CTCAG 2 cut(s) 545, 809
BseNI ACTGG 1 cut(s) 354
BseSI GKGCMC 1 cut(s) 599
BseXI GCAGC 1 cut(s) 367
BseYI CCCAGC 1 cut(s) 754
BsgI GTGCAG 1 cut(s) 880
Bsh1285I CGRYCG 1 cut(s) 637
BshFI GGCC 6 cut(s) 88, 210, 651, 684, 875, 983
BshNI GGYRCC 1 cut(s) 596
BsiEI CGRYCG 1 cut(s) 637
BsiHKAI GWGCWC 2 cut(s) 36, 1023
BsiHKCI CYCGRG 2 cut(s) 74, 155
BslFI GGGAC 2 cut(s) 137, 458
BslI CCNNNNNNNGG 3 cut(s) 421, 614, 823
BsmAI GTCTC 2 cut(s) 274, 464
BsmFI GGGAC 2 cut(s) 137, 458
BsmI GAATGC 2 cut(s) 207, 349
BsnI GGCC 6 cut(s) 88, 210, 651, 684, 875, 983
Bso31I GGTCTC 1 cut(s) 274
BsoBI CYCGRG 2 cut(s) 74, 155
Bsp1286I GDGCHC 3 cut(s) 36, 599, 1023
Bsp143I GATC 6 cut(s) 45, 111, 640, 735, 855, 961
Bsp19I CCATGG 1 cut(s) 990
BspACI CCGC 4 cut(s) 243, 431, 876, 1032
BspANI GGCC 6 cut(s) 88, 210, 651, 684, 875, 983
BspCNI CTCAG 2 cut(s) 544, 810
BspLI GGNNCC 2 cut(s) 153, 598
BspMI ACCTGC 1 cut(s) 925
BspPI GGATC 2 cut(s) 40, 956
BspT107I GGYRCC 1 cut(s) 596
BspTI CTTAAG 1 cut(s) 23
BspTNI GGTCTC 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 663
BsrI ACTGG 1 cut(s) 354
BssECI CCNNGG 4 cut(s) 156, 442, 888, 990
BssMI GATC 6 cut(s) 45, 111, 640, 735, 855, 961
BssT1I CCWWGG 2 cut(s) 888, 990
Bst2UI CCWGG 3 cut(s) 122, 562, 1038
Bst4CI ACNGT 4 cut(s) 185, 638, 904, 927
Bst6I CTCTTC 1 cut(s) 846
BstAFI CTTAAG 1 cut(s) 23
BstC8I GCNNGC 6 cut(s) 247, 686, 718, 909, 913, 981
BstDEI CTNAG 2 cut(s) 531, 818
BstDSI CCRYGG 2 cut(s) 442, 990
BstENI CCTNNNNNAGG 1 cut(s) 821
BstF5I GGATG 5 cut(s) 34, 380, 577, 858, 1021
BstKTI GATC 6 cut(s) 48, 114, 643, 738, 858, 964
BstMAI GTCTC 2 cut(s) 274, 464
BstMBI GATC 6 cut(s) 45, 111, 640, 735, 855, 961
BstMCI CGRYCG 1 cut(s) 637
BstMWI GCNNNNNNNGC 3 cut(s) 222, 541, 1049
BstNI CCWGG 3 cut(s) 122, 562, 1038
BstSCI CCNGG 3 cut(s) 120, 560, 1036
BstSLI GKGCMC 1 cut(s) 599
BstV1I GCAGC 1 cut(s) 367
BstV2I GAAGAC 1 cut(s) 770
BstX2I RGATCY 1 cut(s) 961
BstXI CCANNNNNNTGG 2 cut(s) 568, 692
BstYI RGATCY 1 cut(s) 961
Bsu36I CCTNAGG 1 cut(s) 818
BsuI GTATCC 1 cut(s) 440
BsuRI GGCC 6 cut(s) 88, 210, 651, 684, 875, 983
BtgI CCRYGG 2 cut(s) 442, 990
BtsCI GGATG 5 cut(s) 34, 380, 577, 858, 1021
BtsIMutI CAGTG 2 cut(s) 347, 900
BveI ACCTGC 1 cut(s) 925
Cac8I GCNNGC 6 cut(s) 247, 686, 718, 909, 913, 981
Cfr13I GGNCC 4 cut(s) 151, 209, 650, 1034
CsiI ACCWGGT 2 cut(s) 560, 1036
Csp6I GTAC 2 cut(s) 283, 661
CviAII CATG 6 cut(s) 265, 491, 610, 673, 991, 999
CviQI GTAC 2 cut(s) 283, 661
DdeI CTNAG 2 cut(s) 531, 818
DpnI GATC 6 cut(s) 47, 113, 642, 737, 857, 963
DpnII GATC 6 cut(s) 45, 111, 640, 735, 855, 961
EaeI YGGCCR 2 cut(s) 682, 981
Eam1104I CTCTTC 1 cut(s) 846
EarI CTCTTC 1 cut(s) 846
Ecl136II GAGCTC 2 cut(s) 34, 1021
Eco130I CCWWGG 2 cut(s) 888, 990
Eco24I GRGCYC 2 cut(s) 36, 1023
Eco31I GGTCTC 1 cut(s) 274
Eco47I GGWCC 2 cut(s) 151, 1034
Eco53kI GAGCTC 2 cut(s) 34, 1021
Eco81I CCTNAGG 1 cut(s) 818
Eco88I CYCGRG 2 cut(s) 74, 155
EcoICRI GAGCTC 2 cut(s) 34, 1021
EcoNI CCTNNNNNAGG 1 cut(s) 821
EcoO109I RGGNCCY 1 cut(s) 151
EcoRII CCWGG 3 cut(s) 120, 560, 1036
EcoT14I CCWWGG 2 cut(s) 888, 990
EcoT38I GRGCYC 2 cut(s) 36, 1023
ErhI CCWWGG 2 cut(s) 888, 990
FaeI CATG 6 cut(s) 268, 494, 613, 676, 994, 1002
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FaqI GGGAC 2 cut(s) 137, 458
FatI CATG 6 cut(s) 264, 490, 609, 672, 990, 998
FbaI TGATCA 1 cut(s) 111
Fnu4HI GCNGC 2 cut(s) 356, 876
FokI GGATG 5 cut(s) 41, 367, 584, 845, 1028
FriOI GRGCYC 2 cut(s) 36, 1023
Fsp4HI GCNGC 2 cut(s) 356, 876
GluI GCNGC 2 cut(s) 356, 876
GsaI CCCAGC 1 cut(s) 758
GsuI CTGGAG 2 cut(s) 80, 371
HaeIII GGCC 6 cut(s) 88, 210, 651, 684, 875, 983
Hin1II CATG 6 cut(s) 268, 494, 613, 676, 994, 1002
HindIII AAGCTT 1 cut(s) 1008
HinfI GANTC 3 cut(s) 7, 239, 669
HphI GGTGA 4 cut(s) 283, 689, 745, 949
Hpy166II GTNNAC 1 cut(s) 814
Hpy188I TCNGA 3 cut(s) 12, 582, 668
Hpy188III TCNNGA 3 cut(s) 76, 364, 548
Hpy8I GTNNAC 1 cut(s) 814
HpyAV CCTTC 3 cut(s) 380, 817, 934
HpyCH4III ACNGT 4 cut(s) 185, 638, 904, 927
HpyCH4IV ACGT 1 cut(s) 697
HpyCH4V TGCA 8 cut(s) 225, 317, 347, 524, 656, 897, 907, 1052
HpyF10VI GCNNNNNNNGC 3 cut(s) 222, 541, 1049
HpyF3I CTNAG 2 cut(s) 531, 818
HpySE526I ACGT 1 cut(s) 697
Hsp92II CATG 6 cut(s) 268, 494, 613, 676, 994, 1002
Ksp22I TGATCA 1 cut(s) 111
Kzo9I GATC 6 cut(s) 45, 111, 640, 735, 855, 961
LmnI GCTCC 2 cut(s) 221, 352
Lsp1109I GCAGC 1 cut(s) 367
LweI GCATC 4 cut(s) 511, 562, 846, 976
MabI ACCWGGT 2 cut(s) 560, 1036
MaeII ACGT 1 cut(s) 697
MaeIII GTNAC 6 cut(s) 185, 260, 698, 740, 800, 994
MalI GATC 6 cut(s) 47, 113, 642, 737, 857, 963
MboI GATC 6 cut(s) 45, 111, 640, 735, 855, 961
MboII GAAGA 6 cut(s) 280, 289, 388, 775, 832, 863
MfeI CAATTG 2 cut(s) 220, 690
MflI RGATCY 1 cut(s) 961
MhlI GDGCHC 3 cut(s) 36, 599, 1023
MlsI TGGCCA 1 cut(s) 684
MluCI AATT 6 cut(s) 220, 335, 585, 622, 690, 1047
MluNI TGGCCA 1 cut(s) 684
MlyI GAGTC 2 cut(s) 233, 663
MmeI TCCRAC 1 cut(s) 35
Mox20I TGGCCA 1 cut(s) 684
MscI TGGCCA 1 cut(s) 684
MseI TTAA 3 cut(s) 24, 195, 234
MslI CAYNNNNRTG 1 cut(s) 902
Msp20I TGGCCA 1 cut(s) 684
MspA1I CMGCKG 1 cut(s) 878
MspCI CTTAAG 1 cut(s) 23
MspR9I CCNGG 3 cut(s) 122, 562, 1038
MunI CAATTG 2 cut(s) 220, 690
Mva1269I GAATGC 2 cut(s) 207, 349
MvaI CCWGG 3 cut(s) 122, 562, 1038
MwoI GCNNNNNNNGC 3 cut(s) 222, 541, 1049
NcoI CCATGG 1 cut(s) 990
NdeII GATC 6 cut(s) 45, 111, 640, 735, 855, 961
NlaIII CATG 6 cut(s) 268, 494, 613, 676, 994, 1002
NlaIV GGNNCC 2 cut(s) 153, 598
NmeAIII GCCGAG 1 cut(s) 930
NmuCI GTSAC 2 cut(s) 740, 994
OliI CACNNNNGTG 1 cut(s) 902
PaeR7I CTCGAG 1 cut(s) 74
PaqCI CACCTGC 1 cut(s) 925
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PctI GAATGC 2 cut(s) 207, 349
PfoI TCCNGGA 1 cut(s) 120
PkrI GCNGC 2 cut(s) 357, 877
PleI GAGTC 2 cut(s) 233, 663
PpsI GAGTC 2 cut(s) 233, 663
PpuMI RGGWCCY 1 cut(s) 151
Psp124BI GAGCTC 2 cut(s) 36, 1023
Psp5II RGGWCCY 1 cut(s) 151
Psp6I CCWGG 3 cut(s) 120, 560, 1036
PspFI CCCAGC 1 cut(s) 754
PspGI CCWGG 3 cut(s) 120, 560, 1036
PspN4I GGNNCC 2 cut(s) 153, 598
PspPI GGNCC 4 cut(s) 151, 209, 650, 1034
PspPPI RGGWCCY 1 cut(s) 151
PsuI RGATCY 1 cut(s) 961
RsaI GTAC 2 cut(s) 284, 662
RsaNI GTAC 2 cut(s) 283, 661
RseI CAYNNNNRTG 1 cut(s) 902
SacI GAGCTC 2 cut(s) 36, 1023
SaqAI TTAA 3 cut(s) 24, 195, 234
SatI GCNGC 2 cut(s) 356, 876
Sau3AI GATC 6 cut(s) 45, 111, 640, 735, 855, 961
Sau96I GGNCC 4 cut(s) 151, 209, 650, 1034
SchI GAGTC 2 cut(s) 233, 663
ScrFI CCNGG 3 cut(s) 122, 562, 1038
SduI GDGCHC 3 cut(s) 36, 599, 1023
SexAI ACCWGGT 2 cut(s) 560, 1036
SfaNI GCATC 4 cut(s) 511, 562, 846, 976
Sfr274I CTCGAG 1 cut(s) 74
SinI GGWCC 2 cut(s) 151, 1034
SlaI CTCGAG 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 902
SmlI CTYRAG 3 cut(s) 23, 74, 548
SmoI CTYRAG 3 cut(s) 23, 74, 548
Sse9I AATT 6 cut(s) 220, 335, 585, 622, 690, 1047
SsiI CCGC 4 cut(s) 243, 431, 876, 1032
SstI GAGCTC 2 cut(s) 36, 1023
StyD4I CCNGG 3 cut(s) 120, 560, 1036
StyI CCWWGG 2 cut(s) 888, 990
TaaI ACNGT 4 cut(s) 185, 638, 904, 927
TaiI ACGT 1 cut(s) 700
TaqI TCGA 6 cut(s) 36, 66, 75, 633, 921, 972
TasI AATT 6 cut(s) 220, 335, 585, 622, 690, 1047
TatI WGTACW 2 cut(s) 282, 660
TauI GCSGC 1 cut(s) 878
Tru1I TTAA 3 cut(s) 24, 195, 234
Tru9I TTAA 3 cut(s) 24, 195, 234
TscAI CASTG 2 cut(s) 354, 907
TseFI GTSAC 2 cut(s) 740, 994
TseI GCWGC 1 cut(s) 355
Tsp45I GTSAC 2 cut(s) 740, 994
TspDTI ATGAA 2 cut(s) 186, 635
TspGWI ACGGA 2 cut(s) 431, 452
TspRI CASTG 2 cut(s) 354, 907
Vha464I CTTAAG 1 cut(s) 23
VpaK11BI GGWCC 2 cut(s) 151, 1034
XagI CCTNNNNNAGG 1 cut(s) 821
XapI RAATTY 1 cut(s) 622
XhoI CTCGAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.