Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014196

Physical Location & Seq

Genomic Coordinates Forward (+)

604785 .. 605496

Gene Structure 712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G02790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGACTGGTAAGGCCAAGCCAAAGAAGCATACAGCGAAGGAGATTCAAGCGAAGATCGATGCTGCGTTGACTAATCGAGGCGGAGGAAAAGCTGGAATCGCTGATCGGACCGGAAAAGAGAAAGGAGGCCACGCTAAGTACGAGTGTCCTCATTGCAAAATTACGGCTCCAGGTCTTAAGACGATGCAGATCCATCACGAATCGAAGCATCCTAATATCATTTATGAGGAATCAAAGCTCGTGAATCTCCATGCTGTTTTAGCACCAGTAGCTGAATCGAAACCTAAACCTGGTATCAGGGGAAGCTTGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000304 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006979 GO:0007154 GO:0007584 GO:0008150 GO:0009605 GO:0009889 GO:0009987 GO:0009991 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071452 GO:0071496 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

11.28

Weight (kDa)

9.93

Isoelectric Point (pI)

20.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02790 AT5G16470 AT5G16470
fragaria_vesca	FvH4_6g00510
malus_domestica	MD04G1244600.v1.1 MD12G1260500.v1.1
prunus_persica	Prupe.6G361200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0316641 RchiOBHm_Chr3g0447891
rosa_laevigata	RLG00000025963
rosa_multiflora	Rmu_sc0005969.1_g000002 Rmu_sc0033808.1_g000002
rosa_roxburghii	Rroxscaffold_6G00426090
rosa_rugosa	Rorug02G0606900
rosa_samantha	Rh1BG268500 Rh1DG298600
rosa_wichuraiana	Rw3G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	81
AclWI	GGATC	1 cut(s)	184
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	290
AflII	CTTAAG	1 cut(s)	176
AgsI	TTSAA	2 cut(s)	47, 310
AjnI	CCWGG	2 cut(s)	169, 289
AluBI	AGCT	4 cut(s)	92, 238, 272, 306
AluI	AGCT	4 cut(s)	92, 238, 272, 306
AlwI	GGATC	1 cut(s)	184
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	2 cut(s)	12, 127
ApeKI	GCWGC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	108
BauI	CACGAG	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	1 cut(s)	201
BceAI	ACGGC	1 cut(s)	180
BciT130I	CCWGG	2 cut(s)	171, 291
BfrI	CTTAAG	1 cut(s)	176
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	2 cut(s)	171, 291
Bme18I	GGWCC	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	108
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	2 cut(s)	171, 291
BmsI	GCATC	3 cut(s)	49, 174, 217
BpmI	CTGGAG	1 cut(s)	153
Bsa29I	ATCGAT	1 cut(s)	57
BsaBI	GATNNNNATC	1 cut(s)	188
BsaWI	WCCGGW	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse1I	ACTGG	2 cut(s)	10, 266
Bse3DI	GCAATG	1 cut(s)	151
Bse8I	GATNNNNATC	1 cut(s)	188
BseBI	CCWGG	2 cut(s)	171, 291
BseCI	ATCGAT	1 cut(s)	57
BseGI	GGATG	1 cut(s)	208
BseJI	GATNNNNATC	1 cut(s)	188
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMI	GCAATG	1 cut(s)	151
BseNI	ACTGG	2 cut(s)	10, 266
BseXI	GCAGC	1 cut(s)	49
BshFI	GGCC	2 cut(s)	14, 129
BshVI	ATCGAT	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	290
BsnI	GGCC	2 cut(s)	14, 129
Bsp143I	GATC	3 cut(s)	54, 103, 189
BspACI	CCGC	1 cut(s)	81
BspANI	GGCC	2 cut(s)	14, 129
BspDI	ATCGAT	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	184
BspTI	CTTAAG	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	151
BsrI	ACTGG	2 cut(s)	10, 266
BssMI	GATC	3 cut(s)	54, 103, 189
BssSI	CACGAG	1 cut(s)	239
Bst2BI	CACGAG	1 cut(s)	239
Bst2UI	CCWGG	2 cut(s)	171, 291
BstAFI	CTTAAG	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	3 cut(s)	57, 106, 192
BstMBI	GATC	3 cut(s)	54, 103, 189
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 98, 260, 269
BstNI	CCWGG	2 cut(s)	171, 291
BstSCI	CCNGG	2 cut(s)	169, 289
BstV1I	GCAGC	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
Bsu15I	ATCGAT	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	14, 129
BsuTUI	ATCGAT	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	208
CaiI	CAGNNNCTG	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	108
ClaI	ATCGAT	1 cut(s)	57
CpoI	CGGWCCG	1 cut(s)	108
CsiI	ACCWGGT	1 cut(s)	289
Csp6I	GTAC	1 cut(s)	139
CspI	CGGWCCG	1 cut(s)	108
CviAII	CATG	1 cut(s)	251
CviJI	RGCY	8 cut(s)	14, 19, 92, 129, 167, 238, 272, 306
CviKI_1	RGCY	8 cut(s)	14, 19, 92, 129, 167, 238, 272, 306
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	3 cut(s)	56, 105, 191
DpnII	GATC	3 cut(s)	54, 103, 189
EciI	GGCGGA	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	108
EcoRII	CCWGG	2 cut(s)	169, 289
FaeI	CATG	1 cut(s)	254
FaiI	YATR	3 cut(s)	30, 225, 252
FatI	CATG	1 cut(s)	250
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	1 cut(s)	195
Fsp4HI	GCNGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	63
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	2 cut(s)	14, 129
HapII	CCGG	1 cut(s)	111
Hin1II	CATG	1 cut(s)	254
HincII	GTYRAC	1 cut(s)	69
HindII	GTYRAC	1 cut(s)	69
HindIII	AAGCTT	1 cut(s)	304
HinfI	GANTC	6 cut(s)	43, 96, 200, 230, 244, 275
HpaII	CCGG	1 cut(s)	111
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	1 cut(s)	108
Hpy188III	TCNNGA	2 cut(s)	197, 241
Hpy8I	GTNNAC	1 cut(s)	69
HpyAV	CCTTC	1 cut(s)	31
HpyCH4V	TGCA	2 cut(s)	156, 187
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 98, 260, 269
HpyF3I	CTNAG	1 cut(s)	135
Hsp92II	CATG	1 cut(s)	254
Kzo9I	GATC	3 cut(s)	54, 103, 189
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	8 cut(s)	78, 124, 156, 183, 276, 279, 283, 303
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	3 cut(s)	49, 174, 217
MabI	ACCWGGT	1 cut(s)	289
MalI	GATC	3 cut(s)	56, 105, 191
MboI	GATC	3 cut(s)	54, 103, 189
MboII	GAAGA	1 cut(s)	64
MflI	RGATCY	1 cut(s)	189
MluCI	AATT	1 cut(s)	159
MnlI	CCTC	5 cut(s)	71, 77, 119, 159, 220
MseI	TTAA	1 cut(s)	177
MspCI	CTTAAG	1 cut(s)	176
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	2 cut(s)	171, 291
MvaI	CCWGG	2 cut(s)	171, 291
MwoI	GCNNNNNNNGC	4 cut(s)	25, 98, 260, 269
NdeII	GATC	3 cut(s)	54, 103, 189
NlaIII	CATG	1 cut(s)	254
NlaIV	GGNNCC	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PfeI	GAWTC	6 cut(s)	43, 96, 200, 230, 244, 275
PkrI	GCNGC	1 cut(s)	64
Psp6I	CCWGG	2 cut(s)	169, 289
PspGI	CCWGG	2 cut(s)	169, 289
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	108
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	189
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
Rsr2I	CGGWCCG	1 cut(s)	108
RsrII	CGGWCCG	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	3 cut(s)	54, 103, 189
Sau96I	GGNCC	1 cut(s)	108
ScrFI	CCNGG	2 cut(s)	171, 291
SetI	ASST	7 cut(s)	94, 175, 240, 274, 286, 292, 308
SexAI	ACCWGGT	1 cut(s)	289
SfaNI	GCATC	3 cut(s)	49, 174, 217
SinI	GGWCC	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	1 cut(s)	159
SsiI	CCGC	1 cut(s)	81
StyD4I	CCNGG	2 cut(s)	169, 289
TaqI	TCGA	4 cut(s)	57, 76, 203, 278
TasI	AATT	1 cut(s)	159
TfiI	GAWTC	6 cut(s)	43, 96, 200, 230, 244, 275
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TseI	GCWGC	1 cut(s)	62
Vha464I	CTTAAG	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.