Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0014196

Physical Location & Seq

Genomic Coordinates Reverse (-)

428377 .. 428694

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G000470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGACGGGGAAGGCGAAGCCGAAGAAGCACACGGCGAAGGAGATCCAGGCGAAGATCGACGCGGCGACGACGAATCGCGGTGGCGGGAAGGCCGGAATCGCAGACCGGACCGGGCAGGACAAAGGCGGACACGCCAAGTACGAGTGCCCTCACTGCAAGATAACGGCGCCGGACGTCAAGTCGATGCAGATTCACCACGACTCGAAGCATCCGAAGATTCCCTTCGACGAGGAGAAGATTGTGAATCGCCACGCCAGCACCAGCCAGGCTCCAGCTGAAAAGCCCAAGCCCGGCGTTCGCGGCAGCCTCAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000304 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006979 GO:0007154 GO:0007584 GO:0008150 GO:0009605 GO:0009889 GO:0009987 GO:0009991 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071452 GO:0071496 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

11.31

Weight (kDa)

9.88

Isoelectric Point (pI)

20.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02790 AT5G16470 AT5G16470
fragaria_vesca	FvH4_6g00510
malus_domestica	MD04G1244600.v1.1 MD12G1260500.v1.1
prunus_persica	Prupe.6G361200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0316641 RchiOBHm_Chr3g0447891
rosa_laevigata	RLG00000025963
rosa_multiflora	Rmu_sc0005969.1_g000002 Rmu_sc0033808.1_g000002
rosa_roxburghii	Rroxscaffold_6G00426090
rosa_rugosa	Rorug02G0606900
rosa_samantha	Rh1BG268500 Rh1DG298600
rosa_wichuraiana	Rw3G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	177
AccB1I	GGYRCC	1 cut(s)	166
AccII	CGCG	3 cut(s)	62, 78, 300
AciI	CCGC	5 cut(s)	62, 78, 84, 126, 300
AclWI	GGATC	1 cut(s)	37
AcyI	GRCGYC	2 cut(s)	167, 174
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	290
AhdI	GACNNNNNGTC	1 cut(s)	178
AjnI	CCWGG	2 cut(s)	45, 264
AluBI	AGCT	1 cut(s)	275
AluI	AGCT	1 cut(s)	275
AlwI	GGATC	1 cut(s)	37
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	108
AsuC2I	CCSGG	2 cut(s)	112, 291
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	108
BaeGI	GKGCMC	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	166
BceAI	ACGGC	2 cut(s)	48, 180
BciT130I	CCWGG	2 cut(s)	47, 266
BcnI	CCSGG	2 cut(s)	112, 291
BfoI	RGCGCY	1 cut(s)	170
BisI	GCNGC	3 cut(s)	63, 301, 304
BlsI	GCNGC	3 cut(s)	64, 302, 305
Bme1390I	CCNGG	4 cut(s)	47, 112, 266, 291
Bme18I	GGWCC	1 cut(s)	108
BmeRI	GACNNNNNGTC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	108
BmiI	GGNNCC	2 cut(s)	168, 270
BmrFI	CCNGG	4 cut(s)	47, 112, 266, 291
BmsI	GCATC	2 cut(s)	174, 217
BpmI	CTGGAG	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	293
BpuMI	CCSGG	2 cut(s)	112, 291
BsaHI	GRCGYC	2 cut(s)	167, 174
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
BseBI	CCWGG	2 cut(s)	47, 266
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseRI	GAGGAG	1 cut(s)	245
BseSI	GKGCMC	1 cut(s)	149
Bsh1236I	CGCG	3 cut(s)	62, 78, 300
BshFI	GGCC	1 cut(s)	92
BshNI	GGYRCC	1 cut(s)	166
BsiSI	CCGG	5 cut(s)	93, 106, 111, 170, 291
BslI	CCNNNNNNNGG	1 cut(s)	290
BsnI	GGCC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	2 cut(s)	42, 54
BspACI	CCGC	5 cut(s)	62, 78, 84, 126, 300
BspANI	GGCC	1 cut(s)	92
BspFNI	CGCG	3 cut(s)	62, 78, 300
BspLI	GGNNCC	2 cut(s)	168, 270
BspPI	GGATC	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	166
BssMI	GATC	2 cut(s)	42, 54
BssNI	GRCGYC	2 cut(s)	167, 174
Bst2UI	CCWGG	2 cut(s)	47, 266
BstACI	GRCGYC	2 cut(s)	167, 174
BstC8I	GCNNGC	1 cut(s)	256
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	3 cut(s)	62, 78, 300
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	2 cut(s)	45, 57
BstMBI	GATC	2 cut(s)	42, 54
BstMWI	GCNNNNNNNGC	5 cut(s)	25, 98, 153, 255, 300
BstNI	CCWGG	2 cut(s)	47, 266
BstSCI	CCNGG	4 cut(s)	45, 110, 264, 289
BstSLI	GKGCMC	1 cut(s)	149
BstUI	CGCG	3 cut(s)	62, 78, 300
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	256
CfoI	GCGC	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	108
CpoI	CGGWCCG	1 cut(s)	108
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	139
CspI	CGGWCCG	1 cut(s)	108
CviJI	RGCY	8 cut(s)	19, 92, 264, 269, 275, 283, 289, 306
CviKI_1	RGCY	8 cut(s)	19, 92, 264, 269, 275, 283, 289, 306
CviQI	GTAC	1 cut(s)	139
DinI	GGCGCC	1 cut(s)	168
DpnI	GATC	2 cut(s)	44, 56
DpnII	GATC	2 cut(s)	42, 54
DriI	GACNNNNNGTC	1 cut(s)	178
Eam1105I	GACNNNNNGTC	1 cut(s)	178
EciI	GGCGGA	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	108
EcoRII	CCWGG	2 cut(s)	45, 264
EgeI	GGCGCC	1 cut(s)	168
EheI	GGCGCC	1 cut(s)	168
FalI	AAGNNNNNCTT	2 cut(s)	206, 238
FauI	CCCGC	1 cut(s)	77
Fnu4HI	GCNGC	3 cut(s)	63, 301, 304
FokI	GGATG	1 cut(s)	195
Fsp4HI	GCNGC	3 cut(s)	63, 301, 304
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	3 cut(s)	63, 301, 304
GsuI	CTGGAG	1 cut(s)	255
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	92
HapII	CCGG	5 cut(s)	93, 106, 111, 170, 291
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	169
Hin1I	GRCGYC	2 cut(s)	167, 174
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HinfI	GANTC	6 cut(s)	73, 96, 190, 200, 217, 244
HpaII	CCGG	5 cut(s)	93, 106, 111, 170, 291
HphI	GGTGA	1 cut(s)	185
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	1 cut(s)	310
Hpy99I	CGWCG	4 cut(s)	62, 70, 73, 230
HpyAV	CCTTC	4 cut(s)	4, 31, 82, 232
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	2 cut(s)	156, 187
HpyF10VI	GCNNNNNNNGC	5 cut(s)	25, 98, 153, 255, 300
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	2 cut(s)	167, 174
HspAI	GCGC	1 cut(s)	167
KasI	GGCGCC	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	42, 54
LmnI	GCTCC	1 cut(s)	274
LweI	GCATC	2 cut(s)	174, 217
MaeII	ACGT	1 cut(s)	174
MalI	GATC	2 cut(s)	44, 56
MboI	GATC	2 cut(s)	42, 54
MboII	GAAGA	4 cut(s)	34, 64, 226, 247
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	149
Mly113I	GGCGCC	1 cut(s)	167
MlyI	GAGTC	1 cut(s)	194
MnlI	CCTC	3 cut(s)	159, 223, 317
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	5 cut(s)	93, 106, 111, 170, 291
MspR9I	CCNGG	4 cut(s)	47, 112, 266, 291
MvaI	CCWGG	2 cut(s)	47, 266
MvnI	CGCG	3 cut(s)	62, 78, 300
MwoI	GCNNNNNNNGC	5 cut(s)	25, 98, 153, 255, 300
NarI	GGCGCC	1 cut(s)	167
NciI	CCSGG	2 cut(s)	112, 291
NdeII	GATC	2 cut(s)	42, 54
NlaIV	GGNNCC	2 cut(s)	168, 270
PcsI	WCGNNNNNNNCGW	3 cut(s)	11, 138, 209
PfeI	GAWTC	5 cut(s)	73, 96, 190, 217, 244
PkrI	GCNGC	3 cut(s)	64, 302, 305
PleI	GAGTC	1 cut(s)	194
PluTI	GGCGCC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	194
Psp6I	CCWGG	2 cut(s)	45, 264
PspGI	CCWGG	2 cut(s)	45, 264
PspN4I	GGNNCC	2 cut(s)	168, 270
PspPI	GGNCC	1 cut(s)	108
PsuI	RGATCY	1 cut(s)	42
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
Rsr2I	CGGWCCG	1 cut(s)	108
RsrII	CGGWCCG	1 cut(s)	108
SatI	GCNGC	3 cut(s)	63, 301, 304
Sau3AI	GATC	2 cut(s)	42, 54
Sau96I	GGNCC	1 cut(s)	108
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	4 cut(s)	47, 112, 266, 291
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	2 cut(s)	177, 277
SfaNI	GCATC	2 cut(s)	174, 217
SfoI	GGCGCC	1 cut(s)	168
SinI	GGWCC	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SsiI	CCGC	5 cut(s)	62, 78, 84, 126, 300
SspDI	GGCGCC	1 cut(s)	166
StyD4I	CCNGG	4 cut(s)	45, 110, 264, 289
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	4 cut(s)	57, 182, 203, 225
TauI	GCSGC	2 cut(s)	65, 303
TfiI	GAWTC	5 cut(s)	73, 96, 190, 217, 244
TscAI	CASTG	1 cut(s)	158
TseI	GCWGC	1 cut(s)	303
TspRI	CASTG	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	108
ZraI	GACGTC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.