Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014196

Physical Location & Seq

Genomic Coordinates Forward (+)

5379359 .. 5380512

Gene Structure 1154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGACAGGCAAAGCAAAGCCAAAGAAGCACACAGCGAAGGAGCTCCAAGCTAAAGCCGATGCAGCGTTGACCAATCGCGGTGGAGGAAAGGCAGGGCTCGCCGATAGAACCGGTAAGGAGAAAGGTGGTCACGCAAAGTACGAGTGTCCTCACTGCAAGATCACTGTACCGGATCTAAAGACGATGCAGATCCATCATGAATCGAAGCATCCAAAGCTGACTTATGAAGAGCCGAGGAATCTTCATGAGGCTTTAGCTGCTCCTGCTGAATCATCTAAGCCTAAGCCTGGAATCAGAGGAAGCCTTAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000304 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006979 GO:0007154 GO:0007584 GO:0008150 GO:0009605 GO:0009889 GO:0009987 GO:0009991 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071452 GO:0071496 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.24

Weight (kDa)

9.84

Isoelectric Point (pI)

19.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02790 AT5G16470 AT5G16470
fragaria_vesca	FvH4_6g00510
malus_domestica	MD04G1244600.v1.1 MD12G1260500.v1.1
prunus_persica	Prupe.6G361200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0316641 RchiOBHm_Chr3g0447891
rosa_laevigata	RLG00000025963
rosa_multiflora	Rmu_sc0005969.1_g000002 Rmu_sc0033808.1_g000002
rosa_roxburghii	Rroxscaffold_6G00426090
rosa_rugosa	Rorug02G0606900
rosa_samantha	Rh1BG268500 Rh1DG298600
rosa_wichuraiana	Rw3G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	78
AciI	CCGC	1 cut(s)	78
AclWI	GGATC	2 cut(s)	180, 184
AfaI	GTAC	2 cut(s)	140, 168
AfiI	CCNNNNNNNGG	1 cut(s)	287
AflII	CTTAAG	1 cut(s)	305
AgeI	ACCGGT	1 cut(s)	110
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	4 cut(s)	43, 50, 217, 257
AluI	AGCT	4 cut(s)	43, 50, 217, 257
Alw21I	GWGCWC	1 cut(s)	45
AlwI	GGATC	2 cut(s)	180, 184
ApeKI	GCWGC	2 cut(s)	62, 257
AsiGI	ACCGGT	1 cut(s)	110
BanII	GRGCYC	2 cut(s)	45, 99
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	74, 244
BccI	CCATC	1 cut(s)	201
BciT130I	CCWGG	1 cut(s)	288
BfrI	CTTAAG	1 cut(s)	305
BisI	GCNGC	2 cut(s)	63, 258
BlsI	GCNGC	2 cut(s)	64, 259
Bme1390I	CCNGG	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	3 cut(s)	49, 174, 217
Bpu10I	CCTNAGC	1 cut(s)	282
BsaBI	GATNNNNATC	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	233
BsaWI	WCCGGW	2 cut(s)	110, 169
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse118I	RCCGGY	1 cut(s)	110
Bse8I	GATNNNNATC	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	233
BseGI	GGATG	1 cut(s)	208
BseJI	GATNNNNATC	1 cut(s)	188
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	74, 244
Bsh1236I	CGCG	1 cut(s)	78
BshTI	ACCGGT	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	2 cut(s)	111, 170
BslI	CCNNNNNNNGG	1 cut(s)	287
Bsp1286I	GDGCHC	2 cut(s)	45, 99
Bsp143I	GATC	3 cut(s)	159, 172, 189
BspACI	CCGC	1 cut(s)	78
BspFNI	CGCG	1 cut(s)	78
BspHI	TCATGA	2 cut(s)	196, 244
BspPI	GGATC	2 cut(s)	180, 184
BspQI	GCTCTTC	1 cut(s)	222
BspTI	CTTAAG	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	233
BssMI	GATC	3 cut(s)	159, 172, 189
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	222
BstAFI	CTTAAG	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	2 cut(s)	276, 282
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	1 cut(s)	78
BstKTI	GATC	3 cut(s)	162, 175, 192
BstMBI	GATC	3 cut(s)	159, 172, 189
BstMWI	GCNNNNNNNGC	6 cut(s)	25, 62, 98, 214, 257, 263
BstNI	CCWGG	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	286
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	2 cut(s)	74, 244
BstX2I	RGATCY	2 cut(s)	172, 189
BstYI	RGATCY	2 cut(s)	172, 189
BtsCI	GGATG	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	151
BtsIMutI	CAGTG	2 cut(s)	151, 162
Cac8I	GCNNGC	1 cut(s)	99
CciI	TCATGA	2 cut(s)	196, 244
Cfr10I	RCCGGY	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	139, 167
CspAI	ACCGGT	1 cut(s)	110
CspCI	CAANNNNNGTGG	2 cut(s)	61, 96
CviAII	CATG	2 cut(s)	197, 245
CviQI	GTAC	2 cut(s)	139, 167
DdeI	CTNAG	2 cut(s)	276, 282
DpnI	GATC	3 cut(s)	161, 174, 191
DpnII	GATC	3 cut(s)	159, 172, 189
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Ecl136II	GAGCTC	1 cut(s)	43
Eco24I	GRGCYC	2 cut(s)	45, 99
Eco53kI	GAGCTC	1 cut(s)	43
EcoICRI	GAGCTC	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	286
EcoT38I	GRGCYC	2 cut(s)	45, 99
FaeI	CATG	2 cut(s)	200, 248
FaiI	YATR	3 cut(s)	198, 225, 246
FatI	CATG	2 cut(s)	196, 244
Fnu4HI	GCNGC	2 cut(s)	63, 258
FokI	GGATG	1 cut(s)	195
FriOI	GRGCYC	2 cut(s)	45, 99
Fsp4HI	GCNGC	2 cut(s)	63, 258
GluI	GCNGC	2 cut(s)	63, 258
HapII	CCGG	2 cut(s)	111, 170
Hin1II	CATG	2 cut(s)	200, 248
HincII	GTYRAC	1 cut(s)	69
HindII	GTYRAC	1 cut(s)	69
HinfI	GANTC	4 cut(s)	200, 238, 269, 291
HpaII	CCGG	2 cut(s)	111, 170
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	1 cut(s)	296
Hpy188III	TCNNGA	2 cut(s)	197, 245
Hpy8I	GTNNAC	1 cut(s)	69
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	3 cut(s)	62, 156, 187
HpyF10VI	GCNNNNNNNGC	6 cut(s)	25, 62, 98, 214, 257, 263
HpyF3I	CTNAG	2 cut(s)	276, 282
Hsp92II	CATG	2 cut(s)	200, 248
Kzo9I	GATC	3 cut(s)	159, 172, 189
LguI	GCTCTTC	1 cut(s)	222
LmnI	GCTCC	3 cut(s)	40, 48, 265
LpnPI	CCDG	6 cut(s)	78, 124, 183, 273, 276, 300
Lsp1109I	GCAGC	2 cut(s)	74, 244
LweI	GCATC	3 cut(s)	49, 174, 217
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	3 cut(s)	161, 174, 191
MboI	GATC	3 cut(s)	159, 172, 189
MboII	GAAGA	2 cut(s)	233, 239
MflI	RGATCY	2 cut(s)	172, 189
MhlI	GDGCHC	2 cut(s)	45, 99
MnlI	CCTC	5 cut(s)	77, 159, 228, 241, 290
MseI	TTAA	1 cut(s)	306
MspCI	CTTAAG	1 cut(s)	305
MspI	CCGG	2 cut(s)	111, 170
MspR9I	CCNGG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	288
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	6 cut(s)	25, 62, 98, 214, 257, 263
NdeII	GATC	3 cut(s)	159, 172, 189
NlaIII	CATG	2 cut(s)	200, 248
NmeAIII	GCCGAG	1 cut(s)	258
NmuCI	GTSAC	1 cut(s)	128
PagI	TCATGA	2 cut(s)	196, 244
PciSI	GCTCTTC	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PfeI	GAWTC	4 cut(s)	200, 238, 269, 291
PinAI	ACCGGT	1 cut(s)	110
PkrI	GCNGC	2 cut(s)	64, 259
Psp124BI	GAGCTC	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PsuI	RGATCY	2 cut(s)	172, 189
RsaI	GTAC	2 cut(s)	140, 168
RsaNI	GTAC	2 cut(s)	139, 167
SacI	GAGCTC	1 cut(s)	45
SapI	GCTCTTC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	2 cut(s)	63, 258
Sau3AI	GATC	3 cut(s)	159, 172, 189
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	2 cut(s)	45, 99
SetI	ASST	5 cut(s)	45, 52, 127, 219, 259
SfaNI	GCATC	3 cut(s)	49, 174, 217
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
SsiI	CCGC	1 cut(s)	78
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	286
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	1 cut(s)	203
TfiI	GAWTC	4 cut(s)	200, 238, 269, 291
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	2 cut(s)	158, 169
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	2 cut(s)	62, 257
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	3 cut(s)	213, 233, 240
TspRI	CASTG	2 cut(s)	158, 169
Vha464I	CTTAAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.