Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0014196

Physical Location & Seq

Genomic Coordinates Forward (+)

32646231 .. 32646563

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1260500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGACAGGCAAAGCCAAGCCCAAGAAGCACACGGCCAAGGAGATCGCCGCCAAGATCGATGCTGCCACGACGAACCGCGGCGGCGGGAAGGCTGGTATAGCTGACCGGACCGGACAAGAGAAGGGAGGACACGCGAAGATGGAGTGCCCGCACTGCAAGATCACGGCGCCAGACGTAAAGTCGATCAAGATTCACCACGAGGCTCGTCATCCGAAGATCCCGTTCGAGGAGGAGAAAGTTGTAAACCGCCACGCCAGCACCAGCACCCAGCCGGAGCCGGTCAAGGACGCTAACAAGCCACGCCCCGGCGTCCGTGGAAGCCTGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000304 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006979 GO:0007154 GO:0007584 GO:0008150 GO:0009605 GO:0009889 GO:0009987 GO:0009991 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071452 GO:0071496 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

11.86

Weight (kDa)

10.01

Isoelectric Point (pI)

30.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02790 AT5G16470 AT5G16470
fragaria_vesca	FvH4_6g00510
malus_domestica	MD04G1244600.v1.1 MD12G1260500.v1.1
prunus_persica	Prupe.6G361200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0316641 RchiOBHm_Chr3g0447891
rosa_laevigata	RLG00000025963
rosa_multiflora	Rmu_sc0005969.1_g000002 Rmu_sc0033808.1_g000002
rosa_roxburghii	Rroxscaffold_6G00426090
rosa_rugosa	Rorug02G0606900
rosa_samantha	Rh1BG268500 Rh1DG298600
rosa_wichuraiana	Rw3G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	166
AccII	CGCG	2 cut(s)	78, 134
AciI	CCGC	7 cut(s)	48, 76, 78, 81, 84, 149, 247
AclWI	GGATC	1 cut(s)	211
AcoI	YGGCCR	1 cut(s)	33
AcyI	GRCGYC	2 cut(s)	167, 309
AfiI	CCNNNNNNNGG	2 cut(s)	226, 305
AhdI	GACNNNNNGTC	1 cut(s)	178
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
AlwI	GGATC	1 cut(s)	211
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	62
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	108
AsuC2I	CCSGG	1 cut(s)	306
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	108
BaeGI	GKGCMC	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	166
BauI	CACGAG	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	1 cut(s)	133
BceAI	ACGGC	2 cut(s)	48, 180
BcnI	CCSGG	1 cut(s)	306
BfoI	RGCGCY	1 cut(s)	170
BisI	GCNGC	4 cut(s)	48, 63, 79, 82
BlsI	GCNGC	4 cut(s)	49, 64, 80, 83
Bme1390I	CCNGG	1 cut(s)	306
Bme18I	GGWCC	1 cut(s)	108
BmeRI	GACNNNNNGTC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	108
BmiI	GGNNCC	2 cut(s)	168, 276
BmrFI	CCNGG	1 cut(s)	306
BmsI	GCATC	1 cut(s)	49
BpuMI	CCSGG	1 cut(s)	306
Bsa29I	ATCGAT	1 cut(s)	57
BsaHI	GRCGYC	2 cut(s)	167, 309
BsaJI	CCNNGG	4 cut(s)	36, 76, 304, 313
BsaWI	WCCGGW	2 cut(s)	105, 110
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 305
Bse118I	RCCGGY	1 cut(s)	277
BseCI	ATCGAT	1 cut(s)	57
BseDI	CCNNGG	4 cut(s)	36, 76, 304, 313
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	2 cut(s)	226, 305
BseRI	GAGGAG	2 cut(s)	242, 245
BseSI	GKGCMC	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	49
BseYI	CCCAGC	1 cut(s)	267
Bsh1236I	CGCG	2 cut(s)	78, 134
BshFI	GGCC	1 cut(s)	35
BshNI	GGYRCC	1 cut(s)	166
BshVI	ATCGAT	1 cut(s)	57
BsiSI	CCGG	5 cut(s)	106, 111, 272, 278, 306
BslI	CCNNNNNNNGG	2 cut(s)	226, 305
BsnI	GGCC	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	5 cut(s)	42, 54, 159, 183, 216
BspACI	CCGC	7 cut(s)	48, 76, 78, 81, 84, 149, 247
BspANI	GGCC	1 cut(s)	35
BspDI	ATCGAT	1 cut(s)	57
BspFNI	CGCG	2 cut(s)	78, 134
BspLI	GGNNCC	2 cut(s)	168, 276
BspPI	GGATC	1 cut(s)	211
BspT107I	GGYRCC	1 cut(s)	166
BsrFI	RCCGGY	1 cut(s)	277
BssAI	RCCGGY	1 cut(s)	277
BssECI	CCNNGG	4 cut(s)	36, 76, 304, 313
BssMI	GATC	5 cut(s)	42, 54, 159, 183, 216
BssNI	GRCGYC	2 cut(s)	167, 309
BssSI	CACGAG	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	36
Bst2BI	CACGAG	1 cut(s)	197
BstACI	GRCGYC	2 cut(s)	167, 309
BstC8I	GCNNGC	2 cut(s)	149, 256
BstDSI	CCRYGG	2 cut(s)	76, 313
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	2 cut(s)	78, 134
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	5 cut(s)	45, 57, 162, 186, 219
BstMBI	GATC	5 cut(s)	42, 54, 159, 183, 216
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 98, 153, 255
BstSCI	CCNGG	1 cut(s)	304
BstSLI	GKGCMC	1 cut(s)	149
BstUI	CGCG	2 cut(s)	78, 134
BstV1I	GCAGC	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
Bsu15I	ATCGAT	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	35
BsuTUI	ATCGAT	1 cut(s)	57
BtgI	CCRYGG	2 cut(s)	76, 313
BtsCI	GGATG	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	151
Cac8I	GCNNGC	2 cut(s)	149, 256
CfoI	GCGC	1 cut(s)	169
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	108
Cfr42I	CCGCGG	1 cut(s)	79
ClaI	ATCGAT	1 cut(s)	57
CpoI	CGGWCCG	1 cut(s)	108
CseI	GACGC	2 cut(s)	296, 298
CspI	CGGWCCG	1 cut(s)	108
DinI	GGCGCC	1 cut(s)	168
DpnI	GATC	5 cut(s)	44, 56, 161, 185, 218
DpnII	GATC	5 cut(s)	42, 54, 159, 183, 216
DriI	GACNNNNNGTC	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	33
Eam1105I	GACNNNNNGTC	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	36
EgeI	GGCGCC	1 cut(s)	168
EheI	GGCGCC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	36
FaiI	YATR	1 cut(s)	98
FauI	CCCGC	2 cut(s)	77, 156
Fnu4HI	GCNGC	4 cut(s)	48, 63, 79, 82
FokI	GGATG	1 cut(s)	195
Fsp4HI	GCNGC	4 cut(s)	48, 63, 79, 82
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	4 cut(s)	48, 63, 79, 82
GsaI	CCCAGC	1 cut(s)	271
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	5 cut(s)	106, 111, 272, 278, 306
HgaI	GACGC	2 cut(s)	296, 298
HhaI	GCGC	1 cut(s)	169
Hin1I	GRCGYC	2 cut(s)	167, 309
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HinfI	GANTC	1 cut(s)	190
HpaII	CCGG	5 cut(s)	106, 111, 272, 278, 306
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	1 cut(s)	187
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	82, 115
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	1 cut(s)	156
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 98, 153, 255
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	2 cut(s)	167, 309
HspAI	GCGC	1 cut(s)	167
KasI	GGCGCC	1 cut(s)	166
KspI	CCGCGG	1 cut(s)	79
Kzo9I	GATC	5 cut(s)	42, 54, 159, 183, 216
LmnI	GCTCC	1 cut(s)	274
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	1 cut(s)	49
MaeII	ACGT	1 cut(s)	174
MalI	GATC	5 cut(s)	44, 56, 161, 185, 218
MboI	GATC	5 cut(s)	42, 54, 159, 183, 216
MboII	GAAGA	2 cut(s)	148, 226
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	1 cut(s)	149
Mly113I	GGCGCC	1 cut(s)	167
MnlI	CCTC	4 cut(s)	119, 193, 220, 223
MspA1I	CMGCKG	1 cut(s)	78
MspI	CCGG	5 cut(s)	106, 111, 272, 278, 306
MspR9I	CCNGG	1 cut(s)	306
MvnI	CGCG	2 cut(s)	78, 134
MwoI	GCNNNNNNNGC	4 cut(s)	25, 98, 153, 255
NarI	GGCGCC	1 cut(s)	167
NciI	CCSGG	1 cut(s)	306
NdeII	GATC	5 cut(s)	42, 54, 159, 183, 216
NlaIV	GGNNCC	2 cut(s)	168, 276
PfeI	GAWTC	1 cut(s)	190
PkrI	GCNGC	4 cut(s)	49, 64, 80, 83
PluTI	GGCGCC	1 cut(s)	170
PspFI	CCCAGC	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	168, 276
PspPI	GGNCC	1 cut(s)	108
PsuI	RGATCY	1 cut(s)	216
Rsr2I	CGGWCCG	1 cut(s)	108
RsrII	CGGWCCG	1 cut(s)	108
SacII	CCGCGG	1 cut(s)	79
SatI	GCNGC	4 cut(s)	48, 63, 79, 82
Sau3AI	GATC	5 cut(s)	42, 54, 159, 183, 216
Sau96I	GGNCC	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	306
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	2 cut(s)	103, 177
SfaNI	GCATC	1 cut(s)	49
SfoI	GGCGCC	1 cut(s)	168
Sfr303I	CCGCGG	1 cut(s)	79
SgrBI	CCGCGG	1 cut(s)	79
SinI	GGWCC	1 cut(s)	108
SsiI	CCGC	7 cut(s)	48, 76, 78, 81, 84, 149, 247
SspDI	GGCGCC	1 cut(s)	166
StyD4I	CCNGG	1 cut(s)	304
StyI	CCWWGG	1 cut(s)	36
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	3 cut(s)	57, 182, 225
TauI	GCSGC	3 cut(s)	50, 81, 84
TfiI	GAWTC	1 cut(s)	190
TscAI	CASTG	1 cut(s)	158
TseI	GCWGC	1 cut(s)	62
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.