Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014196

Physical Location & Seq

Genomic Coordinates Forward (+)

4154705 .. 4155016

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54704

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGACGAGGAAGGTGAAGCTGAAGAAGCATGTGGTGAAGGAGATCCAAGTGAAGATCGACACGTCTACGACAAATCGCCGAAGCGGGAAGGCTGGAATCACTGATCGGACCGGGCAGGAAAAAGGTGGACACGCCAAGTACAAGTGCCCTCACTGTAAGATAACAGCGTCGGACGTAAAGTCGAGGCAGATTCACCACGACTCGAAGCATCCGAAGAATCTAAGATGTCTAACTAAAAAGAATTGGCCCAAAATGGTACCGTGGGGTTCGCCGGCATGGCTTGATAATGGAGTGTTCTGTAACAGGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000304 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006979 GO:0007154 GO:0007584 GO:0008150 GO:0009605 GO:0009889 GO:0009987 GO:0009991 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071452 GO:0071496 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

103

Amino Acids

11.81

Weight (kDa)

10.41

Isoelectric Point (pI)

37.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0014196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02790 AT5G16470 AT5G16470
fragaria_vesca	FvH4_6g00510
malus_domestica	MD04G1244600.v1.1 MD12G1260500.v1.1
prunus_persica	Prupe.6G361200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0316641 RchiOBHm_Chr3g0447891
rosa_laevigata	RLG00000025963
rosa_multiflora	Rmu_sc0005969.1_g000002 Rmu_sc0033808.1_g000002
rosa_roxburghii	Rroxscaffold_6G00426090
rosa_rugosa	Rorug02G0606900
rosa_samantha	Rh1BG268500 Rh1DG298600
rosa_wichuraiana	Rw3G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	256
AccB1I	GGYRCC	1 cut(s)	256
AccI	GTMKAC	1 cut(s)	65
AciI	CCGC	1 cut(s)	84
AclWI	GGATC	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	41
AfaI	GTAC	2 cut(s)	140, 258
AflIII	ACRYGT	1 cut(s)	60
AhdI	GACNNNNNGTC	1 cut(s)	178
AjiI	CACGTC	1 cut(s)	63
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
AlwI	GGATC	1 cut(s)	37
AoxI	GGCC	1 cut(s)	245
Asp718I	GGTACC	1 cut(s)	256
AspS9I	GGNCC	2 cut(s)	108, 246
AsuC2I	CCSGG	1 cut(s)	112
AsuHPI	GGTGA	3 cut(s)	25, 46, 185
AvaII	GGWCC	1 cut(s)	108
BaeGI	GKGCMC	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	112
BglI	GCCNNNNNGGC	1 cut(s)	277
Bme1390I	CCNGG	1 cut(s)	112
Bme18I	GGWCC	1 cut(s)	108
BmeRI	GACNNNNNGTC	1 cut(s)	178
BmgBI	CACGTC	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	108, 246
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	1 cut(s)	112
BmsI	GCATC	1 cut(s)	217
BpuMI	CCSGG	1 cut(s)	112
BsaJI	CCNNGG	1 cut(s)	260
Bse118I	RCCGGY	1 cut(s)	271
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	1 cut(s)	208
BseSI	GKGCMC	1 cut(s)	149
BshFI	GGCC	1 cut(s)	247
BshNI	GGYRCC	1 cut(s)	256
BsiSI	CCGG	2 cut(s)	111, 272
BsnI	GGCC	1 cut(s)	247
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	3 cut(s)	42, 54, 103
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	258
BspPI	GGATC	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	256
BsrFI	RCCGGY	1 cut(s)	271
BssAI	RCCGGY	1 cut(s)	271
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	3 cut(s)	42, 54, 103
Bst4CI	ACNGT	2 cut(s)	155, 261
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	1 cut(s)	221
BstDSI	CCRYGG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	3 cut(s)	45, 57, 106
BstMBI	GATC	3 cut(s)	42, 54, 103
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 277
BstNSI	RCATGY	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	110
BstSLI	GKGCMC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	247
BtgI	CCRYGG	1 cut(s)	260
BtrI	CACGTC	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	2 cut(s)	99, 151
Cac8I	GCNNGC	1 cut(s)	273
Cfr10I	RCCGGY	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	108, 246
CpoI	CGGWCCG	1 cut(s)	108
CseI	GACGC	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	139, 257
CspI	CGGWCCG	1 cut(s)	108
CviAII	CATG	2 cut(s)	29, 276
CviJI	RGCY	4 cut(s)	19, 92, 247, 280
CviKI_1	RGCY	4 cut(s)	19, 92, 247, 280
CviQI	GTAC	2 cut(s)	139, 257
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	3 cut(s)	44, 56, 105
DpnII	GATC	3 cut(s)	42, 54, 103
DriI	GACNNNNNGTC	1 cut(s)	178
Eam1105I	GACNNNNNGTC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	108
Eco57I	CTGAAG	1 cut(s)	41
FaeI	CATG	2 cut(s)	32, 279
FaiI	YATR	2 cut(s)	30, 277
FatI	CATG	2 cut(s)	28, 275
FauI	CCCGC	1 cut(s)	77
FblI	GTMKAC	1 cut(s)	65
FokI	GGATG	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	247
HapII	CCGG	2 cut(s)	111, 272
HgaI	GACGC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	32, 279
HinfI	GANTC	4 cut(s)	96, 190, 200, 217
HpaII	CCGG	2 cut(s)	111, 272
HphI	GGTGA	3 cut(s)	25, 46, 185
Hpy166II	GTNNAC	2 cut(s)	66, 128
Hpy188I	TCNGA	3 cut(s)	108, 172, 213
Hpy8I	GTNNAC	2 cut(s)	66, 128
Hpy99I	CGWCG	1 cut(s)	172
HpyAV	CCTTC	3 cut(s)	4, 31, 82
HpyCH4III	ACNGT	2 cut(s)	155, 261
HpyCH4IV	ACGT	2 cut(s)	62, 174
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 277
HpyF3I	CTNAG	1 cut(s)	221
HpySE526I	ACGT	2 cut(s)	62, 174
Hsp92II	CATG	2 cut(s)	32, 279
KpnI	GGTACC	1 cut(s)	260
KroI	GCCGGC	1 cut(s)	271
KroNI	GCCGGC	1 cut(s)	273
Kzo9I	GATC	3 cut(s)	42, 54, 103
LpnPI	CCDG	5 cut(s)	78, 101, 124, 285, 289
LweI	GCATC	1 cut(s)	217
MaeII	ACGT	2 cut(s)	62, 174
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	3 cut(s)	44, 56, 105
MboI	GATC	3 cut(s)	42, 54, 103
MboII	GAAGA	3 cut(s)	34, 64, 226
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	149
MluCI	AATT	1 cut(s)	241
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	2 cut(s)	159, 177
MroNI	GCCGGC	1 cut(s)	271
MseI	TTAA	1 cut(s)	310
MspI	CCGG	2 cut(s)	111, 272
MspR9I	CCNGG	1 cut(s)	112
MwoI	GCNNNNNNNGC	2 cut(s)	25, 277
NaeI	GCCGGC	1 cut(s)	273
NciI	CCSGG	1 cut(s)	112
NdeII	GATC	3 cut(s)	42, 54, 103
NgoMIV	GCCGGC	1 cut(s)	271
NlaIII	CATG	2 cut(s)	32, 279
NlaIV	GGNNCC	1 cut(s)	258
NspI	RCATGY	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	1 cut(s)	209
PdiI	GCCGGC	1 cut(s)	273
PfeI	GAWTC	3 cut(s)	96, 190, 217
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	2 cut(s)	108, 246
PsuI	RGATCY	1 cut(s)	42
RsaI	GTAC	2 cut(s)	140, 258
RsaNI	GTAC	2 cut(s)	139, 257
Rsr2I	CGGWCCG	1 cut(s)	108
RsrII	CGGWCCG	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	310
Sau3AI	GATC	3 cut(s)	42, 54, 103
Sau96I	GGNCC	2 cut(s)	108, 246
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	112
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	5 cut(s)	15, 21, 65, 127, 177
SfaNI	GCATC	1 cut(s)	217
SinI	GGWCC	1 cut(s)	108
Sse9I	AATT	1 cut(s)	241
SsiI	CCGC	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	110
TaaI	ACNGT	2 cut(s)	155, 261
TaiI	ACGT	2 cut(s)	65, 177
TaqI	TCGA	3 cut(s)	57, 182, 203
TasI	AATT	1 cut(s)	241
TatI	WGTACW	1 cut(s)	138
TfiI	GAWTC	3 cut(s)	96, 190, 217
Tru1I	TTAA	1 cut(s)	310
Tru9I	TTAA	1 cut(s)	310
TscAI	CASTG	2 cut(s)	106, 158
TspRI	CASTG	2 cut(s)	106, 158
VpaK11BI	GGWCC	1 cut(s)	108
XceI	RCATGY	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.