Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0014196

Physical Location & Seq

Genomic Coordinates Forward (+)

40233638 .. 40233943

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG268500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGACGGGGAAGGCGAAACCGAAGAAGCATGTGGCGATGGAGATCCAGGTGAAGATCGACGCGTCTACGACAAATCGCCGAAGCGGGAAGGCCGGAATCGCTGACCGGACCGAGCAGGAAAAAGGTGGACACGCCAAGTACGAGTGCCCTCACTCCAAGATAACGGCGTTGGACGTAACGTCGAGGCACCACGACTCGAAGCATCCGAAGAATCTAAGATGTCCAACTGAAAAGAATTGGCCCAAAATGGTACCGTGGTGTTCGCCGGCATGGCTTGATAATGGGGTGTTCTGTAACAGGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000304 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006979 GO:0007154 GO:0007584 GO:0008150 GO:0009605 GO:0009889 GO:0009987 GO:0009991 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071452 GO:0071496 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

11.43

Weight (kDa)

9.81

Isoelectric Point (pI)

49.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02790 AT5G16470 AT5G16470
fragaria_vesca	FvH4_6g00510
malus_domestica	MD04G1244600.v1.1 MD12G1260500.v1.1
prunus_persica	Prupe.6G361200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0316641 RchiOBHm_Chr3g0447891
rosa_laevigata	RLG00000025963
rosa_multiflora	Rmu_sc0005969.1_g000002 Rmu_sc0033808.1_g000002
rosa_roxburghii	Rroxscaffold_6G00426090
rosa_rugosa	Rorug02G0606900
rosa_samantha	Rh1BG268500 Rh1DG298600
rosa_wichuraiana	Rw3G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	250
AccB1I	GGYRCC	2 cut(s)	186, 250
AccI	GTMKAC	1 cut(s)	65
AccII	CGCG	1 cut(s)	62
AciI	CCGC	1 cut(s)	84
AclWI	GGATC	1 cut(s)	37
AfaI	GTAC	2 cut(s)	140, 252
AflIII	ACRYGT	1 cut(s)	60
AhdI	GACNNNNNGTC	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	45
AlwI	GGATC	1 cut(s)	37
AoxI	GGCC	2 cut(s)	90, 239
Asp718I	GGTACC	1 cut(s)	250
AspS9I	GGNCC	2 cut(s)	108, 240
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	108
BaeGI	GKGCMC	1 cut(s)	149
BaeI	ACNNNNGTAYC	2 cut(s)	242, 275
BanI	GGYRCC	2 cut(s)	186, 250
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	1 cut(s)	180
BciT130I	CCWGG	1 cut(s)	47
BglI	GCCNNNNNGGC	1 cut(s)	271
Bme1390I	CCNGG	1 cut(s)	47
Bme18I	GGWCC	1 cut(s)	108
BmeRI	GACNNNNNGTC	1 cut(s)	178
BmgT120I	GGNCC	2 cut(s)	108, 240
BmiI	GGNNCC	2 cut(s)	188, 252
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	1 cut(s)	211
BsaBI	GATNNNNATC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	254
BsaWI	WCCGGW	1 cut(s)	105
Bse118I	RCCGGY	1 cut(s)	265
Bse8I	GATNNNNATC	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	254
BseGI	GGATG	1 cut(s)	202
BseJI	GATNNNNATC	1 cut(s)	41
BseSI	GKGCMC	1 cut(s)	149
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	2 cut(s)	92, 241
BshNI	GGYRCC	2 cut(s)	186, 250
BsiSI	CCGG	3 cut(s)	93, 106, 266
BsnI	GGCC	2 cut(s)	92, 241
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	2 cut(s)	42, 54
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	2 cut(s)	92, 241
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	2 cut(s)	188, 252
BspPI	GGATC	1 cut(s)	37
BspT107I	GGYRCC	2 cut(s)	186, 250
BsrFI	RCCGGY	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	254
BssMI	GATC	2 cut(s)	42, 54
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	1 cut(s)	215
BstDSI	CCRYGG	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	1 cut(s)	62
BstKTI	GATC	2 cut(s)	45, 57
BstMBI	GATC	2 cut(s)	42, 54
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 271
BstNI	CCWGG	1 cut(s)	47
BstNSI	RCATGY	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	45
BstSLI	GKGCMC	1 cut(s)	149
BstUI	CGCG	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BsuRI	GGCC	2 cut(s)	92, 241
BtgI	CCRYGG	1 cut(s)	254
BtgZI	GCGATG	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	267
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	2 cut(s)	108, 240
CpoI	CGGWCCG	1 cut(s)	108
CseI	GACGC	2 cut(s)	51, 68
Csp6I	GTAC	2 cut(s)	139, 251
CspI	CGGWCCG	1 cut(s)	108
CviAII	CATG	2 cut(s)	29, 270
CviJI	RGCY	3 cut(s)	92, 241, 274
CviKI_1	RGCY	3 cut(s)	92, 241, 274
CviQI	GTAC	2 cut(s)	139, 251
DdeI	CTNAG	1 cut(s)	215
DpnI	GATC	2 cut(s)	44, 56
DpnII	GATC	2 cut(s)	42, 54
DriI	GACNNNNNGTC	1 cut(s)	178
Eam1105I	GACNNNNNGTC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	45
FaeI	CATG	2 cut(s)	32, 273
FaiI	YATR	2 cut(s)	30, 271
FatI	CATG	2 cut(s)	28, 269
FauI	CCCGC	1 cut(s)	77
FblI	GTMKAC	1 cut(s)	65
FokI	GGATG	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	92, 241
HapII	CCGG	3 cut(s)	93, 106, 266
HgaI	GACGC	2 cut(s)	51, 68
Hin1II	CATG	2 cut(s)	32, 273
HinfI	GANTC	3 cut(s)	96, 194, 211
HpaII	CCGG	3 cut(s)	93, 106, 266
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	2 cut(s)	66, 128
Hpy188I	TCNGA	1 cut(s)	207
Hpy8I	GTNNAC	2 cut(s)	66, 128
Hpy99I	CGWCG	2 cut(s)	62, 184
HpyAV	CCTTC	2 cut(s)	4, 82
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4IV	ACGT	2 cut(s)	174, 179
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 271
HpyF3I	CTNAG	1 cut(s)	215
HpySE526I	ACGT	2 cut(s)	174, 179
Hsp92II	CATG	2 cut(s)	32, 273
KpnI	GGTACC	1 cut(s)	254
KroI	GCCGGC	1 cut(s)	265
KroNI	GCCGGC	1 cut(s)	267
Kzo9I	GATC	2 cut(s)	42, 54
LpnPI	CCDG	7 cut(s)	32, 59, 101, 106, 119, 279, 283
LweI	GCATC	1 cut(s)	211
MaeII	ACGT	2 cut(s)	174, 179
MaeIII	GTNAC	2 cut(s)	175, 293
MalI	GATC	2 cut(s)	44, 56
MboI	GATC	2 cut(s)	42, 54
MboII	GAAGA	3 cut(s)	34, 64, 220
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	149
MluCI	AATT	1 cut(s)	235
MluI	ACGCGT	1 cut(s)	60
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	2 cut(s)	150, 248
MnlI	CCTC	2 cut(s)	159, 177
MroNI	GCCGGC	1 cut(s)	265
MseI	TTAA	1 cut(s)	304
MspI	CCGG	3 cut(s)	93, 106, 266
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	98, 271
NaeI	GCCGGC	1 cut(s)	267
NdeII	GATC	2 cut(s)	42, 54
NgoMIV	GCCGGC	1 cut(s)	265
NlaIII	CATG	2 cut(s)	32, 273
NlaIV	GGNNCC	2 cut(s)	188, 252
NspI	RCATGY	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	3 cut(s)	11, 138, 203
PdiI	GCCGGC	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	96, 211
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	2 cut(s)	188, 252
PspPI	GGNCC	2 cut(s)	108, 240
PsuI	RGATCY	1 cut(s)	42
RsaI	GTAC	2 cut(s)	140, 252
RsaNI	GTAC	2 cut(s)	139, 251
Rsr2I	CGGWCCG	1 cut(s)	108
RsrII	CGGWCCG	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	304
Sau3AI	GATC	2 cut(s)	42, 54
Sau96I	GGNCC	2 cut(s)	108, 240
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	4 cut(s)	51, 127, 177, 182
SfaNI	GCATC	1 cut(s)	211
SinI	GGWCC	1 cut(s)	108
Sse9I	AATT	1 cut(s)	235
SsiI	CCGC	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	255
TaiI	ACGT	2 cut(s)	177, 182
TaqI	TCGA	3 cut(s)	57, 182, 197
TaqII	GACCGA	1 cut(s)	125
TasI	AATT	1 cut(s)	235
TfiI	GAWTC	2 cut(s)	96, 211
Tru1I	TTAA	1 cut(s)	304
Tru9I	TTAA	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	108
XceI	RCATGY	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.