Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005467

Physical Location & Seq

Genomic Coordinates Forward (+)

72439444 .. 72442098

Gene Structure 2655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0606900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGAAACCGCTTCTTCACTTGGTTTCTGTAATCTACGTGGTTTCTGTGTTTCTGGGTATCCATGGACCTGTTGTATACGGGCGGTTACTATTAGTGAAGGATAAACCCGACCCGAAAAATGCTGCTGCCACTGCTCGTTGGCTGGTCTCCCAGAATTCCTGGGGTGTTTTGAATACCATCTCAGGTGAATTGGGAGGAGCGCCCTTTGGGAATGTGGTTTCATTTAGTGATGGGGAACCTGGAAAAGGAAGTGGTATCCCATACTTCTACTTGACAACTCTTGATCCGACTGCAAGGAATGCACTGAAAGACCAAAGGGCTTCTTTGACAATTAGTGAGCATCCTATTGGCACCTGTGGCAAAGTCGACCCTGAAAACCCCACCTGTGCAAAGATTACACTCACAGGAAAGTTGAAGGTTGCTAATGGAGGGCCCAAAGAAGAAGAAATTGCTAGAAAGGCCTTGTTCTCAAAGCATCCAGAGATGAAAGACTGGCCCAAGGGTCACAACTTCAAGTTCTTCAAGTTAGACATCGAGGATATCTTTTTGATTGATTGGTTTGGGGGTCCAAAACCTCTCACAGTGGACCAATACCTTCAAGCCAAATTGACAGAACACACCTTCATTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Y_phosphatase2

Protein Analysis

210

Amino Acids

23.03

Weight (kDa)

8.76

Isoelectric Point (pI)

18.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CREG_beta-barrel	PF13883	36 - 199	3.3e-62	CREG, beta-barrel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02800 AT5G16480 AT5G16480
fragaria_vesca	FvH4_6g00520
malus_domestica	MD04G1244500.v1.1 MD12G1260400.v1.1 MD16G1025100.v1.1
prunus_persica	Prupe.1G328300_v2.0.a1 Prupe.6G361100_v2.0.a1
pyrus_communis	pycom04g21540 pycom12g23850 pycom16g02110
rosa_chinensis	RchiOBHm_Chr3g0447901 RchiOBHm_Chr4g0441711
rosa_laevigata	RLG00000006073 RLG00000025962
rosa_multiflora	Rmu_sc0005969.1_g000003 Rmu_sc0033808.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382540 Rroxscaffold_6G00426100
rosa_rugosa	Rorug02G0606900
rosa_samantha	Rh3AG006200 Rh3BG005800 Rh3CG006100 Rh3DG006400 Rh4AG387000 Rh4DG394100
rosa_wichuraiana	Rw3G000480 Rw4G033440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	350
AccI	GTMKAC	2 cut(s)	75, 366
AciI	CCGC	2 cut(s)	8, 82
AclWI	GGATC	1 cut(s)	278
AcsI	RAATTY	1 cut(s)	154
AfiI	CCNNNNNNNGG	1 cut(s)	245
AgsI	TTSAA	5 cut(s)	172, 415, 514, 523, 599
AjnI	CCWGG	2 cut(s)	158, 238
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	1 cut(s)	278
AoxI	GGCC	3 cut(s)	431, 459, 494
ApaI	GGGCCC	1 cut(s)	435
ApeKI	GCWGC	2 cut(s)	122, 125
ApoI	RAATTY	1 cut(s)	154
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	6 cut(s)	65, 431, 432, 495, 566, 586
AsuHPI	GGTGA	1 cut(s)	197
AvaII	GGWCC	3 cut(s)	65, 566, 586
BaeGI	GKGCMC	1 cut(s)	435
BanI	GGYRCC	1 cut(s)	350
BanII	GRGCYC	1 cut(s)	435
BbvI	GCAGC	2 cut(s)	109, 112
BccI	CCATC	2 cut(s)	185, 224
BciT130I	CCWGG	2 cut(s)	160, 240
BciVI	GTATCC	2 cut(s)	68, 266
BcoDI	GTCTC	1 cut(s)	151
BfaI	CTAG	1 cut(s)	453
BfoI	RGCGCY	1 cut(s)	203
BfuI	GTATCC	2 cut(s)	68, 266
BisI	GCNGC	2 cut(s)	123, 126
BlsI	GCNGC	2 cut(s)	124, 127
Bme1390I	CCNGG	2 cut(s)	160, 240
Bme18I	GGWCC	3 cut(s)	65, 566, 586
BmgT120I	GGNCC	6 cut(s)	65, 431, 432, 495, 566, 586
BmiI	GGNNCC	4 cut(s)	237, 352, 433, 567
BmrFI	CCNGG	2 cut(s)	160, 240
BmsI	GCATC	2 cut(s)	349, 484
BsaAI	YACGTR	1 cut(s)	37
BsaI	GGTCTC	1 cut(s)	151
BsaJI	CCNNGG	3 cut(s)	61, 159, 498
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	497
BseBI	CCWGG	2 cut(s)	160, 240
BseDI	CCNNGG	3 cut(s)	61, 159, 498
BseGI	GGATG	2 cut(s)	340, 475
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	497
BseRI	GAGGAG	1 cut(s)	210
BseSI	GKGCMC	1 cut(s)	435
BseXI	GCAGC	2 cut(s)	109, 112
BshFI	GGCC	3 cut(s)	433, 461, 496
BshNI	GGYRCC	1 cut(s)	350
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	151
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	3 cut(s)	433, 461, 496
Bso31I	GGTCTC	1 cut(s)	151
Bsp120I	GGGCCC	1 cut(s)	431
Bsp1286I	GDGCHC	1 cut(s)	435
Bsp143I	GATC	1 cut(s)	283
Bsp19I	CCATGG	1 cut(s)	61
BspACI	CCGC	2 cut(s)	8, 82
BspANI	GGCC	3 cut(s)	433, 461, 496
BspCNI	CTCAG	1 cut(s)	194
BspLI	GGNNCC	4 cut(s)	237, 352, 433, 567
BspPI	GGATC	1 cut(s)	278
BspT107I	GGYRCC	1 cut(s)	350
BspTNI	GGTCTC	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	497
BssECI	CCNNGG	3 cut(s)	61, 159, 498
BssMI	GATC	1 cut(s)	283
BssNAI	GTATAC	1 cut(s)	76
BssT1I	CCWWGG	2 cut(s)	61, 498
Bst1107I	GTATAC	1 cut(s)	76
Bst2UI	CCWGG	2 cut(s)	160, 240
Bst4CI	ACNGT	1 cut(s)	583
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstBAI	YACGTR	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	181
BstDSI	CCRYGG	1 cut(s)	61
BstENI	CCTNNNNNAGG	1 cut(s)	243
BstF5I	GGATG	2 cut(s)	340, 475
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	1 cut(s)	286
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 299, 357, 458
BstNI	CCWGG	2 cut(s)	160, 240
BstSCI	CCNGG	2 cut(s)	158, 238
BstSLI	GKGCMC	1 cut(s)	435
BstV1I	GCAGC	2 cut(s)	109, 112
BstZ17I	GTATAC	1 cut(s)	76
BsuI	GTATCC	2 cut(s)	68, 266
BsuRI	GGCC	3 cut(s)	433, 461, 496
BtgI	CCRYGG	1 cut(s)	61
BtsCI	GGATG	2 cut(s)	340, 475
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	3 cut(s)	129, 302, 588
CfoI	GCGC	1 cut(s)	202
Cfr13I	GGNCC	6 cut(s)	65, 431, 432, 495, 566, 586
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	6 cut(s)	142, 320, 433, 461, 496, 602
CviKI_1	RGCY	6 cut(s)	142, 320, 433, 461, 496, 602
DdeI	CTNAG	1 cut(s)	181
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
Eco130I	CCWWGG	2 cut(s)	61, 498
Eco147I	AGGCCT	1 cut(s)	461
Eco24I	GRGCYC	1 cut(s)	435
Eco31I	GGTCTC	1 cut(s)	151
Eco32I	GATATC	1 cut(s)	541
Eco47I	GGWCC	3 cut(s)	65, 566, 586
EcoNI	CCTNNNNNAGG	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	431
EcoRI	GAATTC	1 cut(s)	154
EcoRII	CCWGG	2 cut(s)	158, 238
EcoRV	GATATC	1 cut(s)	541
EcoT14I	CCWWGG	2 cut(s)	61, 498
EcoT38I	GRGCYC	1 cut(s)	435
ErhI	CCWWGG	2 cut(s)	61, 498
FaeI	CATG	1 cut(s)	65
FaiI	YATR	3 cut(s)	63, 76, 262
FalI	AAGNNNNNCTT	2 cut(s)	307, 339
FatI	CATG	1 cut(s)	61
FblI	GTMKAC	2 cut(s)	75, 366
Fnu4HI	GCNGC	2 cut(s)	123, 126
FokI	GGATG	2 cut(s)	327, 462
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	2 cut(s)	123, 126
FspBI	CTAG	1 cut(s)	453
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	2 cut(s)	123, 126
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	3 cut(s)	433, 461, 496
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	1 cut(s)	65
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	3 cut(s)	76, 367, 586
Hpy188I	TCNGA	1 cut(s)	288
Hpy188III	TCNNGA	2 cut(s)	281, 479
Hpy8I	GTNNAC	3 cut(s)	76, 367, 586
HpyAV	CCTTC	4 cut(s)	91, 409, 605, 631
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	3 cut(s)	293, 302, 389
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 299, 357, 458
HpyF3I	CTNAG	1 cut(s)	181
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	65
HspAI	GCGC	1 cut(s)	200
Kzo9I	GATC	1 cut(s)	283
LmnI	GCTCC	1 cut(s)	197
Lsp1109I	GCAGC	2 cut(s)	109, 112
LweI	GCATC	2 cut(s)	349, 484
MaeI	CTAG	1 cut(s)	453
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	2 cut(s)	84, 503
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	4 cut(s)	5, 452, 455, 511
MhlI	GDGCHC	1 cut(s)	435
MluCI	AATT	5 cut(s)	154, 188, 330, 447, 605
MmeI	TCCRAC	1 cut(s)	311
MnlI	CCTC	4 cut(s)	188, 422, 529, 585
MspR9I	CCNGG	2 cut(s)	160, 240
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	2 cut(s)	160, 240
MwoI	GCNNNNNNNGC	4 cut(s)	131, 299, 357, 458
NcoI	CCATGG	1 cut(s)	61
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	4 cut(s)	237, 352, 433, 567
NmuCI	GTSAC	1 cut(s)	503
PceI	AGGCCT	1 cut(s)	461
PctI	GAATGC	1 cut(s)	304
PkrI	GCNGC	2 cut(s)	124, 127
Ppu21I	YACGTR	1 cut(s)	37
Psp6I	CCWGG	2 cut(s)	158, 238
PspGI	CCWGG	2 cut(s)	158, 238
PspN4I	GGNNCC	4 cut(s)	237, 352, 433, 567
PspOMI	GGGCCC	1 cut(s)	431
PspPI	GGNCC	6 cut(s)	65, 431, 432, 495, 566, 586
SalI	GTCGAC	1 cut(s)	365
SatI	GCNGC	2 cut(s)	123, 126
Sau3AI	GATC	1 cut(s)	283
Sau96I	GGNCC	6 cut(s)	65, 431, 432, 495, 566, 586
ScrFI	CCNGG	2 cut(s)	160, 240
SduI	GDGCHC	1 cut(s)	435
SfaNI	GCATC	2 cut(s)	349, 484
SinI	GGWCC	3 cut(s)	65, 566, 586
Sse9I	AATT	5 cut(s)	154, 188, 330, 447, 605
SseBI	AGGCCT	1 cut(s)	461
SsiI	CCGC	2 cut(s)	8, 82
SspMI	CTAG	1 cut(s)	453
StuI	AGGCCT	1 cut(s)	461
StyD4I	CCNGG	2 cut(s)	158, 238
StyI	CCWWGG	2 cut(s)	61, 498
TaaI	ACNGT	1 cut(s)	583
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	366, 534
TasI	AATT	5 cut(s)	154, 188, 330, 447, 605
TscAI	CASTG	3 cut(s)	136, 309, 588
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	2 cut(s)	122, 125
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	4 cut(s)	17, 210, 500, 613
TspRI	CASTG	3 cut(s)	136, 309, 588
VpaK11BI	GGWCC	3 cut(s)	65, 566, 586
XagI	CCTNNNNNAGG	1 cut(s)	243
XapI	RAATTY	1 cut(s)	154
XmiI	GTMKAC	2 cut(s)	75, 366
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.