Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005467

Physical Location & Seq

Genomic Coordinates Reverse (-)

31198792 .. 31199409

Gene Structure 618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G328300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGATCCAGGACGACAACGACGTTTTGGAGCCGCCGATCAATTTCTCGACGGTGGACGAGGGCATTTTCAGATCGGGCTTCCCTCAGCCGCCCAATTTCCCATTCCTCAAAACCCTTCAACTCCGATCCATCATATATCTGTGCCCCGAGCCCTACCCGGAGGAGAATCTGGAGTTTCTTCGGTCTCAAAACATCCAGCTGTTCCAATTCGGAATCGAGGGGAAGAAGAAGGCTTCTTCTTCGGCTGCATCGTCGATCCCCAAGCAGACGATCTTGGAGGCTCTGAAGGTGTTGATCGACGTGAGGAACCATCCGGTGTTGATCCACTGCAAACGTGGCAAGCATCGGACGGGTTGTCTCGTGGGTGTGCTGAGGAAATTTCAGAATTGGTGCTTGGCTTCGGTGTTTGAGGAGTACCAGAGATTCGCGGGCGCGAAATCTAGGACGACCGATTTGAGATTTATTGAGACGTTTGACGTGGTGGGGCTGAGGGACTGCCTGTACGGCATCATCCACCATTACTATCGACTAGCCTACTACGCTTCCAAGAAGAGGCGCTTGTTATTGTACACACAAGCACAACAAGACATGCAAACCTATCGACATTATAAACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Y_phosphatase2

Protein Analysis

206

Amino Acids

23.91

Weight (kDa)

9.27

Isoelectric Point (pI)

61.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02800 AT5G16480 AT5G16480
fragaria_vesca	FvH4_6g00520
malus_domestica	MD04G1244500.v1.1 MD12G1260400.v1.1 MD16G1025100.v1.1
prunus_persica	Prupe.1G328300_v2.0.a1 Prupe.6G361100_v2.0.a1
pyrus_communis	pycom04g21540 pycom12g23850 pycom16g02110
rosa_chinensis	RchiOBHm_Chr3g0447901 RchiOBHm_Chr4g0441711
rosa_laevigata	RLG00000006073 RLG00000025962
rosa_multiflora	Rmu_sc0005969.1_g000003 Rmu_sc0033808.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382540 Rroxscaffold_6G00426100
rosa_rugosa	Rorug02G0606900
rosa_samantha	Rh3AG006200 Rh3BG005800 Rh3CG006100 Rh3DG006400 Rh4AG387000 Rh4DG394100
rosa_wichuraiana	Rw3G000480 Rw4G033440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	609
AccII	CGCG	2 cut(s)	428, 434
AciI	CCGC	3 cut(s)	32, 89, 428
AclWI	GGATC	3 cut(s)	120, 250, 316
AcsI	RAATTY	1 cut(s)	377
AcuI	CTGAAG	1 cut(s)	305
AfaI	GTAC	3 cut(s)	416, 503, 569
AfiI	CCNNNNNNNGG	1 cut(s)	552
AgsI	TTSAA	1 cut(s)	119
AhdI	GACNNNNNGTC	1 cut(s)	354
AjiI	CACGTC	2 cut(s)	301, 478
AjnI	CCWGG	1 cut(s)	6
AjuI	GAANNNNNNNTTGG	4 cut(s)	86, 118, 377, 409
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
Alw26I	GTCTC	3 cut(s)	189, 362, 461
AlwI	GGATC	3 cut(s)	120, 250, 316
Ama87I	CYCGRG	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	245
ApoI	RAATTY	1 cut(s)	377
ArsI	GACNNNNNNTTYG	2 cut(s)	436, 468
AspLEI	GCGC	2 cut(s)	434, 558
AsuC2I	CCSGG	1 cut(s)	158
AvaI	CYCGRG	1 cut(s)	146
BaeGI	GKGCMC	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	153
BauI	CACGAG	1 cut(s)	359
BbvCI	CCTCAGC	3 cut(s)	84, 371, 488
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	2 cut(s)	137, 318
BceAI	ACGGC	1 cut(s)	520
BcgI	CGANNNNNNTGC	2 cut(s)	581, 615
BciT130I	CCWGG	1 cut(s)	8
BcnI	CCSGG	1 cut(s)	158
BcoDI	GTCTC	3 cut(s)	189, 362, 461
BfaI	CTAG	2 cut(s)	441, 530
BfoI	RGCGCY	1 cut(s)	559
BglI	GCCNNNNNGGC	1 cut(s)	504
BisI	GCNGC	3 cut(s)	32, 89, 246
BlsI	GCNGC	3 cut(s)	33, 90, 247
Bme1390I	CCNGG	2 cut(s)	8, 158
BmeRI	GACNNNNNGTC	1 cut(s)	354
BmeT110I	CYCGRG	1 cut(s)	146
BmgBI	CACGTC	2 cut(s)	301, 478
BmiI	GGNNCC	2 cut(s)	30, 308
BmrFI	CCNGG	2 cut(s)	8, 158
BmsI	GCATC	3 cut(s)	257, 352, 516
BpmI	CTGGAG	1 cut(s)	191
Bpu10I	CCTNAGC	3 cut(s)	84, 371, 488
BpuMI	CCSGG	1 cut(s)	158
BsaI	GGTCTC	1 cut(s)	189
BsaWI	WCCGGW	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	8
BseGI	GGATG	3 cut(s)	192, 310, 510
BseLI	CCNNNNNNNGG	1 cut(s)	552
BseMII	CTCAG	3 cut(s)	98, 362, 479
BseRI	GAGGAG	2 cut(s)	176, 425
BseSI	GKGCMC	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	232
Bsh1236I	CGCG	2 cut(s)	428, 434
Bsh1285I	CGRYCG	1 cut(s)	450
BsiEI	CGRYCG	1 cut(s)	450
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	158, 314
BslFI	GGGAC	1 cut(s)	506
BslI	CCNNNNNNNGG	1 cut(s)	552
BsmAI	GTCTC	3 cut(s)	189, 362, 461
BsmBI	CGTCTC	1 cut(s)	461
BsmFI	GGGAC	1 cut(s)	506
Bso31I	GGTCTC	1 cut(s)	189
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	146, 153
Bsp1407I	TGTACA	1 cut(s)	567
Bsp143I	GATC	8 cut(s)	3, 36, 71, 125, 255, 270, 294, 321
BspACI	CCGC	3 cut(s)	32, 89, 428
BspCNI	CTCAG	3 cut(s)	97, 363, 480
BspFNI	CGCG	2 cut(s)	428, 434
BspLI	GGNNCC	2 cut(s)	30, 308
BspPI	GGATC	3 cut(s)	120, 250, 316
BspTNI	GGTCTC	1 cut(s)	189
BsrGI	TGTACA	1 cut(s)	567
BssMI	GATC	8 cut(s)	3, 36, 71, 125, 255, 270, 294, 321
BssSI	CACGAG	1 cut(s)	359
Bst2BI	CACGAG	1 cut(s)	359
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	1 cut(s)	545
BstAUI	TGTACA	1 cut(s)	567
BstC8I	GCNNGC	2 cut(s)	341, 430
BstDEI	CTNAG	3 cut(s)	84, 371, 488
BstF5I	GGATG	3 cut(s)	192, 310, 510
BstFNI	CGCG	2 cut(s)	428, 434
BstH2I	RGCGCY	1 cut(s)	559
BstHHI	GCGC	2 cut(s)	434, 558
BstKTI	GATC	8 cut(s)	6, 39, 74, 128, 258, 273, 297, 324
BstMAI	GTCTC	3 cut(s)	189, 362, 461
BstMBI	GATC	8 cut(s)	3, 36, 71, 125, 255, 270, 294, 321
BstMCI	CGRYCG	1 cut(s)	450
BstMWI	GCNNNNNNNGC	3 cut(s)	336, 504, 539
BstNI	CCWGG	1 cut(s)	8
BstNSI	RCATGY	1 cut(s)	592
BstSCI	CCNGG	2 cut(s)	6, 156
BstSLI	GKGCMC	1 cut(s)	146
BstUI	CGCG	2 cut(s)	428, 434
BstV1I	GCAGC	1 cut(s)	232
BtrI	CACGTC	2 cut(s)	301, 478
BtsCI	GGATG	3 cut(s)	192, 310, 510
BtsI	GCAGTG	1 cut(s)	325
BtsIMutI	CAGTG	1 cut(s)	325
Cac8I	GCNNGC	2 cut(s)	341, 430
CfoI	GCGC	2 cut(s)	434, 558
Csp6I	GTAC	3 cut(s)	415, 502, 568
CviAII	CATG	1 cut(s)	589
CviQI	GTAC	3 cut(s)	415, 502, 568
DdeI	CTNAG	3 cut(s)	84, 371, 488
DpnI	GATC	8 cut(s)	5, 38, 73, 127, 257, 272, 296, 323
DpnII	GATC	8 cut(s)	3, 36, 71, 125, 255, 270, 294, 321
DriI	GACNNNNNGTC	1 cut(s)	354
Eam1104I	CTCTTC	1 cut(s)	545
Eam1105I	GACNNNNNGTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	545
Eco24I	GRGCYC	1 cut(s)	153
Eco31I	GGTCTC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	305
Eco88I	CYCGRG	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	153
Esp3I	CGTCTC	1 cut(s)	461
FaeI	CATG	1 cut(s)	592
FaiI	YATR	4 cut(s)	134, 136, 590, 609
FalI	AAGNNNNNCTT	2 cut(s)	542, 574
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	1 cut(s)	588
FauI	CCCGC	1 cut(s)	421
Fnu4HI	GCNGC	3 cut(s)	32, 89, 246
FokI	GGATG	3 cut(s)	179, 297, 497
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	3 cut(s)	32, 89, 246
FspBI	CTAG	2 cut(s)	441, 530
GlaI	GCGC	2 cut(s)	433, 557
GluI	GCNGC	3 cut(s)	32, 89, 246
GsuI	CTGGAG	1 cut(s)	191
HaeII	RGCGCY	1 cut(s)	559
HapII	CCGG	2 cut(s)	158, 314
HhaI	GCGC	2 cut(s)	434, 558
Hin1II	CATG	1 cut(s)	592
Hin6I	GCGC	2 cut(s)	432, 556
HinP1I	GCGC	2 cut(s)	432, 556
HinfI	GANTC	3 cut(s)	166, 213, 423
HpaII	CCGG	2 cut(s)	158, 314
Hpy166II	GTNNAC	2 cut(s)	55, 570
Hpy188I	TCNGA	6 cut(s)	71, 125, 212, 285, 348, 384
Hpy188III	TCNNGA	2 cut(s)	46, 170
Hpy8I	GTNNAC	2 cut(s)	55, 570
Hpy99I	CGWCG	4 cut(s)	23, 52, 256, 302
HpyAV	CCTTC	3 cut(s)	125, 223, 280
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	5 cut(s)	21, 300, 334, 470, 477
HpyCH4V	TGCA	3 cut(s)	248, 330, 592
HpyF10VI	GCNNNNNNNGC	3 cut(s)	336, 504, 539
HpyF3I	CTNAG	3 cut(s)	84, 371, 488
HpySE526I	ACGT	5 cut(s)	21, 300, 334, 470, 477
Hsp92II	CATG	1 cut(s)	592
HspAI	GCGC	2 cut(s)	432, 556
Kzo9I	GATC	8 cut(s)	3, 36, 71, 125, 255, 270, 294, 321
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	7 cut(s)	20, 155, 171, 209, 327, 431, 512
Lsp1109I	GCAGC	1 cut(s)	232
LweI	GCATC	3 cut(s)	257, 352, 516
MaeI	CTAG	2 cut(s)	441, 530
MaeII	ACGT	5 cut(s)	21, 300, 334, 470, 477
MalI	GATC	8 cut(s)	5, 38, 73, 127, 257, 272, 296, 323
MboI	GATC	8 cut(s)	3, 36, 71, 125, 255, 270, 294, 321
MboII	GAAGA	6 cut(s)	170, 228, 231, 235, 238, 562
MhlI	GDGCHC	2 cut(s)	146, 153
MluCI	AATT	5 cut(s)	40, 94, 206, 377, 385
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	2 cut(s)	158, 314
MspR9I	CCNGG	2 cut(s)	8, 158
MvaI	CCWGG	1 cut(s)	8
MvnI	CGCG	2 cut(s)	428, 434
MwoI	GCNNNNNNNGC	3 cut(s)	336, 504, 539
NciI	CCSGG	1 cut(s)	158
NdeII	GATC	8 cut(s)	3, 36, 71, 125, 255, 270, 294, 321
NlaIII	CATG	1 cut(s)	592
NlaIV	GGNNCC	2 cut(s)	30, 308
NspI	RCATGY	1 cut(s)	592
PcsI	WCGNNNNNNNCGW	2 cut(s)	18, 248
PfeI	GAWTC	3 cut(s)	166, 213, 423
PfoI	TCCNGGA	1 cut(s)	6
PkrI	GCNGC	3 cut(s)	33, 90, 247
PsiI	TTATAA	1 cut(s)	609
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	2 cut(s)	30, 308
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	3 cut(s)	416, 503, 569
RsaNI	GTAC	3 cut(s)	415, 502, 568
SatI	GCNGC	3 cut(s)	32, 89, 246
Sau3AI	GATC	8 cut(s)	3, 36, 71, 125, 255, 270, 294, 321
ScrFI	CCNGG	2 cut(s)	8, 158
SduI	GDGCHC	2 cut(s)	146, 153
SetI	ASST	8 cut(s)	24, 201, 291, 303, 337, 473, 480, 599
SfaNI	GCATC	3 cut(s)	257, 352, 516
Sse9I	AATT	5 cut(s)	40, 94, 206, 377, 385
SsiI	CCGC	3 cut(s)	32, 89, 428
SspMI	CTAG	2 cut(s)	441, 530
StyD4I	CCNGG	2 cut(s)	6, 156
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	5 cut(s)	24, 303, 337, 473, 480
TaqI	TCGA	6 cut(s)	47, 216, 254, 297, 526, 601
TaqII	GACCGA	2 cut(s)	171, 464
TasI	AATT	5 cut(s)	40, 94, 206, 377, 385
TatI	WGTACW	1 cut(s)	567
TauI	GCSGC	2 cut(s)	34, 91
TfiI	GAWTC	3 cut(s)	166, 213, 423
TscAI	CASTG	1 cut(s)	332
TseI	GCWGC	1 cut(s)	245
TspRI	CASTG	1 cut(s)	332
XapI	RAATTY	1 cut(s)	377
XceI	RCATGY	1 cut(s)	592
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332
XspI	CTAG	2 cut(s)	441, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.