Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033808.1

Orthogroup ID

OG0005467

Physical Location & Seq

Genomic Coordinates Forward (+)

2250 .. 4154

Gene Structure 1905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033808.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgacgatgacgatgacgatggagaagcagaacaagatgaacgaccacgacgacgttttggagccgccgatcaatttctcgatggtggaggacggcattttcagatctggcttccctcacccggccaacttccctttcctcaagtccctcaatctccgatcaatcatatatttgtgtcctgagccatatccagaggagaatttggagtttcttcgctctcaaaacattcggctcctccaattcggaatcgagggaaagacggagtctgtagctattcccaaggatactatcttggaggctttgaaaatcttgattgatgtgagaaatcatcctgtgttgatccattgcaagcgtggaaagcatcggactggttgtcttgttggttgcctgcgaaaatttcagaattggtgtttgtcttctgtgtttgaggagtaccagcgatttgctggggtgaagtcgaggccaacagatttgaaattcatagaggcatttgacataatgcgcttgaggcaatgcctttacagcattatctaccagtatcaaggttacggttctaacaagaggcggttggtgtacagagatgagaagatacagaagccccaaaccatgaaagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Y_phosphatase2

Protein Analysis

205

Amino Acids

24.08

Weight (kDa)

9.11

Isoelectric Point (pI)

56.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02800 AT5G16480 AT5G16480
fragaria_vesca	FvH4_6g00520
malus_domestica	MD04G1244500.v1.1 MD12G1260400.v1.1 MD16G1025100.v1.1
prunus_persica	Prupe.1G328300_v2.0.a1 Prupe.6G361100_v2.0.a1
pyrus_communis	pycom04g21540 pycom12g23850 pycom16g02110
rosa_chinensis	RchiOBHm_Chr3g0447901 RchiOBHm_Chr4g0441711
rosa_laevigata	RLG00000006073 RLG00000025962
rosa_multiflora	Rmu_sc0005969.1_g000003 Rmu_sc0033808.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382540 Rroxscaffold_6G00426100
rosa_rugosa	Rorug02G0606900
rosa_samantha	Rh3AG006200 Rh3BG005800 Rh3CG006100 Rh3DG006400 Rh4AG387000 Rh4DG394100
rosa_wichuraiana	Rw3G000480 Rw4G033440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	65, 565
AclWI	GGATC	1 cut(s)	334
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	3 cut(s)	199, 395, 476
AfaI	GTAC	2 cut(s)	434, 575
AfiI	CCNNNNNNNGG	1 cut(s)	121
AgsI	TTSAA	2 cut(s)	304, 475
AhdI	GACNNNNNGTC	1 cut(s)	372
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AluBI	AGCT	1 cut(s)	272
AluI	AGCT	1 cut(s)	272
AlwI	GGATC	1 cut(s)	334
AoxI	GGCC	2 cut(s)	123, 461
ApoI	RAATTY	3 cut(s)	199, 395, 476
AspLEI	GCGC	1 cut(s)	504
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	2 cut(s)	110, 463
BbsI	GAAGAC	1 cut(s)	408
BccI	CCATC	2 cut(s)	13, 76
BceAI	ACGGC	1 cut(s)	109
BciVI	GTATCC	1 cut(s)	277
BcnI	CCSGG	1 cut(s)	122
BfmI	CTRYAG	1 cut(s)	267
BfuI	GTATCC	1 cut(s)	277
BglII	AGATCT	1 cut(s)	104
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
Bme1390I	CCNGG	1 cut(s)	122
BmeRI	GACNNNNNGTC	1 cut(s)	372
BmiI	GGNNCC	2 cut(s)	63, 233
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	370
BpiI	GAAGAC	1 cut(s)	408
Bpu10I	CCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	2 cut(s)	125, 526
BpuMI	CCSGG	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse1I	ACTGG	2 cut(s)	373, 535
Bse3DI	GCAATG	2 cut(s)	343, 518
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMI	GCAATG	2 cut(s)	343, 518
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	2 cut(s)	373, 535
BseRI	GAGGAG	3 cut(s)	209, 224, 443
BseYI	CCCAGC	1 cut(s)	446
BshFI	GGCC	2 cut(s)	125, 463
BsiSI	CCGG	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	130
BsnI	GGCC	2 cut(s)	125, 463
Bsp1407I	TGTACA	1 cut(s)	573
Bsp143I	GATC	4 cut(s)	69, 104, 158, 339
BspACI	CCGC	2 cut(s)	65, 565
BspANI	GGCC	2 cut(s)	125, 463
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	2 cut(s)	63, 233
BspPI	GGATC	1 cut(s)	334
BsrDI	GCAATG	2 cut(s)	343, 518
BsrGI	TGTACA	1 cut(s)	573
BsrI	ACTGG	2 cut(s)	373, 535
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	4 cut(s)	69, 104, 158, 339
BssT1I	CCWWGG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	551
BstAUI	TGTACA	1 cut(s)	573
BstC8I	GCNNGC	2 cut(s)	350, 389
BstDEI	CTNAG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	328
BstHHI	GCGC	1 cut(s)	504
BstKTI	GATC	4 cut(s)	72, 107, 161, 342
BstMBI	GATC	4 cut(s)	69, 104, 158, 339
BstMWI	GCNNNNNNNGC	3 cut(s)	358, 508, 522
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	1 cut(s)	267
BstV2I	GAAGAC	1 cut(s)	408
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BsuI	GTATCC	1 cut(s)	277
BsuRI	GGCC	2 cut(s)	125, 463
BtsCI	GGATG	1 cut(s)	328
Cac8I	GCNNGC	2 cut(s)	350, 389
CfoI	GCGC	1 cut(s)	504
Csp6I	GTAC	2 cut(s)	433, 574
CviAII	CATG	1 cut(s)	607
CviJI	RGCY	9 cut(s)	64, 111, 125, 184, 232, 272, 299, 463, 598
CviKI_1	RGCY	9 cut(s)	64, 111, 125, 184, 232, 272, 299, 463, 598
CviQI	GTAC	2 cut(s)	433, 574
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	4 cut(s)	71, 106, 160, 341
DpnII	GATC	4 cut(s)	69, 104, 158, 339
DriI	GACNNNNNGTC	1 cut(s)	372
EaeI	YGGCCR	1 cut(s)	123
Eam1105I	GACNNNNNGTC	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	1 cut(s)	610
FaiI	YATR	6 cut(s)	167, 169, 187, 482, 497, 608
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	1 cut(s)	606
Fnu4HI	GCNGC	1 cut(s)	65
FokI	GGATG	1 cut(s)	315
Fsp4HI	GCNGC	1 cut(s)	65
GlaI	GCGC	1 cut(s)	503
GluI	GCNGC	1 cut(s)	65
GsaI	CCCAGC	1 cut(s)	450
HaeIII	GGCC	2 cut(s)	125, 463
HapII	CCGG	1 cut(s)	122
HhaI	GCGC	1 cut(s)	504
Hin1II	CATG	1 cut(s)	610
Hin6I	GCGC	1 cut(s)	502
HinP1I	GCGC	1 cut(s)	502
HinfI	GANTC	2 cut(s)	246, 263
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	2 cut(s)	110, 463
Hpy166II	GTNNAC	1 cut(s)	574
Hpy188I	TCNGA	5 cut(s)	104, 158, 245, 366, 402
Hpy188III	TCNNGA	4 cut(s)	79, 179, 191, 310
Hpy8I	GTNNAC	1 cut(s)	574
Hpy99I	CGWCG	2 cut(s)	53, 56
HpyCH4III	ACNGT	1 cut(s)	551
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	1 cut(s)	348
HpyF10VI	GCNNNNNNNGC	3 cut(s)	358, 508, 522
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	610
HspAI	GCGC	1 cut(s)	502
Kzo9I	GATC	4 cut(s)	69, 104, 158, 339
LmnI	GCTCC	2 cut(s)	61, 237
LweI	GCATC	1 cut(s)	370
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	4 cut(s)	71, 106, 160, 341
MboI	GATC	4 cut(s)	69, 104, 158, 339
MboII	GAAGA	3 cut(s)	203, 408, 598
MflI	RGATCY	1 cut(s)	104
MluCI	AATT	6 cut(s)	73, 199, 239, 395, 403, 476
MlyI	GAGTC	1 cut(s)	272
MseI	TTAA	1 cut(s)	616
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	3 cut(s)	358, 508, 522
NciI	CCSGG	1 cut(s)	122
NdeII	GATC	4 cut(s)	69, 104, 158, 339
NlaIII	CATG	1 cut(s)	610
NlaIV	GGNNCC	2 cut(s)	63, 233
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	246
PflFI	GACNNNGTC	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	66
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	446
PspN4I	GGNNCC	2 cut(s)	63, 233
PsuI	RGATCY	1 cut(s)	104
PsyI	GACNNNGTC	1 cut(s)	262
RsaI	GTAC	2 cut(s)	434, 575
RsaNI	GTAC	2 cut(s)	433, 574
SaqAI	TTAA	1 cut(s)	616
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	4 cut(s)	69, 104, 158, 339
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	1 cut(s)	122
SetI	ASST	3 cut(s)	57, 274, 547
SfaNI	GCATC	1 cut(s)	370
SfcI	CTRYAG	1 cut(s)	267
SmlI	CTYRAG	2 cut(s)	140, 505
SmoI	CTYRAG	2 cut(s)	140, 505
Sse9I	AATT	6 cut(s)	73, 199, 239, 395, 403, 476
SsiI	CCGC	2 cut(s)	65, 565
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	551
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	3 cut(s)	80, 249, 458
TasI	AATT	6 cut(s)	73, 199, 239, 395, 403, 476
TatI	WGTACW	1 cut(s)	573
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	1 cut(s)	246
Tru1I	TTAA	1 cut(s)	616
Tru9I	TTAA	1 cut(s)	616
TspDTI	ATGAA	2 cut(s)	53, 469
TspGWI	ACGGA	1 cut(s)	275
Tth111I	GACNNNGTC	1 cut(s)	262
XapI	RAATTY	3 cut(s)	199, 395, 476
XcmI	CCANNNNNNNNNTGG	2 cut(s)	350, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.