Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005467

Physical Location & Seq

Genomic Coordinates Forward (+)

1330542 .. 1331135

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g02110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGACCATGACCAACATCGACAACGTTTTGGAGCGGCCCATCAATTTCTCGATGGTGGATGAGGGCGTATTCCGATCAGGCTTCCCGCAGCCGTCAAACTTCCCATTCCTCCAATCCCTTCAACTCCGTTCCATTATCTATCTCTGCCCCGAGCCCTACCCGGAGGAGAGTTTGGAGTTTCTTCGGTCGCAAGGCATTCGGCTCTTCCAGTTCGGAATCGAGGGCAAGAAGGAGCGGTCTACGTCTCCGCTGATTCCAGCAGAGACCATCTCCGAGGCACTGAAAGTTTTGGTTGATGTTGAGAATCATCCGGTGTTGATCCACTGCAAACGCGGCAAGCATCGGACTGGTTGTCTGGTGGGTTGCCTGAGGAAATTTCAGAATTGGTGTTTGTCTTCGGCGTTAGAGGAGTACCAGCGGTTTGCCGGCGAAAAATCTAGGAGGACGGATTTGAGATTTATAGAGACGTTTGACGTATTGGGCCTCAAGGGGGACGCTTTCAGGGCATTCTCCGCCATTATTATTAAGCTTATGCTTCCGGAAAGAGGCGGTTGTTGTACAAACAAGAGTTGCAAATCCATAAACCCTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Y_phosphatase2

Protein Analysis

198

Amino Acids

22.45

Weight (kDa)

8.81

Isoelectric Point (pI)

61.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Y_phosphatase2	PF03162	12 - 159	1.2e-58	Tyrosine phosphatase family
PTP-NADK	PF22741	87 - 137	9.2e-07	DSP-PTPase phosphatase fused to NAD+ Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02800 AT5G16480 AT5G16480
fragaria_vesca	FvH4_6g00520
malus_domestica	MD04G1244500.v1.1 MD12G1260400.v1.1 MD16G1025100.v1.1
prunus_persica	Prupe.1G328300_v2.0.a1 Prupe.6G361100_v2.0.a1
pyrus_communis	pycom04g21540 pycom12g23850 pycom16g02110
rosa_chinensis	RchiOBHm_Chr3g0447901 RchiOBHm_Chr4g0441711
rosa_laevigata	RLG00000006073 RLG00000025962
rosa_multiflora	Rmu_sc0005969.1_g000003 Rmu_sc0033808.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382540 Rroxscaffold_6G00426100
rosa_rugosa	Rorug02G0606900
rosa_samantha	Rh3AG006200 Rh3BG005800 Rh3CG006100 Rh3DG006400 Rh4AG387000 Rh4DG394100
rosa_wichuraiana	Rw3G000480 Rw4G033440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	34, 235
AccI	GTMKAC	1 cut(s)	239
AccII	CGCG	1 cut(s)	333
AccIII	TCCGGA	1 cut(s)	538
AciI	CCGC	8 cut(s)	34, 86, 235, 248, 333, 418, 513, 549
AclI	AACGTT	1 cut(s)	24
AclWI	GGATC	1 cut(s)	313
AcsI	RAATTY	1 cut(s)	374
AfaI	GTAC	2 cut(s)	413, 559
AfiI	CCNNNNNNNGG	2 cut(s)	490, 545
AgsI	TTSAA	1 cut(s)	122
AhdI	GACNNNNNGTC	1 cut(s)	351
AluBI	AGCT	1 cut(s)	529
AluI	AGCT	1 cut(s)	529
Alw26I	GTCTC	3 cut(s)	249, 257, 458
AlwI	GGATC	1 cut(s)	313
Ama87I	CYCGRG	1 cut(s)	149
Aor13HI	TCCGGA	1 cut(s)	538
AoxI	GGCC	2 cut(s)	35, 481
ApeKI	GCWGC	1 cut(s)	88
ApoI	RAATTY	1 cut(s)	374
AspA2I	CCTAGG	1 cut(s)	587
AspS9I	GGNCC	2 cut(s)	36, 481
AsuC2I	CCSGG	1 cut(s)	161
AvaI	CYCGRG	1 cut(s)	149
AvrII	CCTAGG	1 cut(s)	587
AxyI	CCTNAGG	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	387
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	3 cut(s)	46, 47, 275
BceAI	ACGGC	1 cut(s)	76
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	3 cut(s)	249, 257, 458
BfaI	CTAG	2 cut(s)	438, 588
BisI	GCNGC	3 cut(s)	35, 89, 334
BlnI	CCTAGG	1 cut(s)	587
BlsI	GCNGC	3 cut(s)	36, 90, 335
Bme1390I	CCNGG	1 cut(s)	161
BmeRI	GACNNNNNGTC	1 cut(s)	351
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	2 cut(s)	36, 481
BmrFI	CCNGG	1 cut(s)	161
BmsI	GCATC	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	387
BplI	GAGNNNNNCTC	2 cut(s)	254, 286
BpuEI	CTTGAG	1 cut(s)	470
BpuMI	CCSGG	1 cut(s)	161
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	273, 587
BsaWI	WCCGGW	2 cut(s)	310, 538
Bsc4I	CCNNNNNNNGG	2 cut(s)	490, 545
Bse118I	RCCGGY	1 cut(s)	425
Bse1I	ACTGG	2 cut(s)	208, 352
Bse21I	CCTNAGG	1 cut(s)	368
BseAI	TCCGGA	1 cut(s)	538
BseDI	CCNNGG	2 cut(s)	273, 587
BseGI	GGATG	2 cut(s)	64, 307
BseLI	CCNNNNNNNGG	2 cut(s)	490, 545
BseMII	CTCAG	1 cut(s)	359
BseNI	ACTGG	2 cut(s)	208, 352
BseRI	GAGGAG	2 cut(s)	179, 422
BseXI	GCAGC	1 cut(s)	100
Bsh1236I	CGCG	1 cut(s)	333
Bsh1285I	CGRYCG	1 cut(s)	188
BshFI	GGCC	2 cut(s)	37, 483
BsiEI	CGRYCG	1 cut(s)	188
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	4 cut(s)	161, 311, 426, 539
BslFI	GGGAC	1 cut(s)	506
BslI	CCNNNNNNNGG	2 cut(s)	490, 545
BsmAI	GTCTC	3 cut(s)	249, 257, 458
BsmBI	CGTCTC	2 cut(s)	249, 458
BsmFI	GGGAC	1 cut(s)	506
BsmI	GAATGC	2 cut(s)	195, 506
BsnI	GGCC	2 cut(s)	37, 483
Bso31I	GGTCTC	1 cut(s)	257
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp13I	TCCGGA	1 cut(s)	538
Bsp1407I	TGTACA	1 cut(s)	557
Bsp143I	GATC	2 cut(s)	74, 318
BspACI	CCGC	8 cut(s)	34, 86, 235, 248, 333, 418, 513, 549
BspANI	GGCC	2 cut(s)	37, 483
BspCNI	CTCAG	1 cut(s)	360
BspEI	TCCGGA	1 cut(s)	538
BspFNI	CGCG	1 cut(s)	333
BspPI	GGATC	1 cut(s)	313
BspQI	GCTCTTC	1 cut(s)	209
BspTNI	GGTCTC	1 cut(s)	257
BsrBI	CCGCTC	2 cut(s)	34, 235
BsrFI	RCCGGY	1 cut(s)	425
BsrGI	TGTACA	1 cut(s)	557
BsrI	ACTGG	2 cut(s)	208, 352
BssAI	RCCGGY	1 cut(s)	425
BssECI	CCNNGG	2 cut(s)	273, 587
BssMI	GATC	2 cut(s)	74, 318
BssT1I	CCWWGG	1 cut(s)	587
Bst6I	CTCTTC	1 cut(s)	209
BstAUI	TGTACA	1 cut(s)	557
BstC8I	GCNNGC	2 cut(s)	338, 427
BstDEI	CTNAG	1 cut(s)	368
BstF5I	GGATG	2 cut(s)	64, 307
BstFNI	CGCG	1 cut(s)	333
BstKTI	GATC	2 cut(s)	77, 321
BstMAI	GTCTC	3 cut(s)	249, 257, 458
BstMBI	GATC	2 cut(s)	74, 318
BstMCI	CGRYCG	1 cut(s)	188
BstMWI	GCNNNNNNNGC	3 cut(s)	333, 503, 512
BstSCI	CCNGG	1 cut(s)	159
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	100
BstV2I	GAAGAC	1 cut(s)	387
Bsu36I	CCTNAGG	1 cut(s)	368
BsuRI	GGCC	2 cut(s)	37, 483
BtsCI	GGATG	2 cut(s)	64, 307
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	2 cut(s)	278, 322
Cac8I	GCNNGC	2 cut(s)	338, 427
Cfr10I	RCCGGY	1 cut(s)	425
Cfr13I	GGNCC	2 cut(s)	36, 481
CseI	GACGC	1 cut(s)	503
Csp6I	GTAC	2 cut(s)	412, 558
CviAII	CATG	1 cut(s)	7
CviJI	RGCY	7 cut(s)	37, 81, 91, 154, 202, 483, 529
CviKI_1	RGCY	7 cut(s)	37, 81, 91, 154, 202, 483, 529
CviQI	GTAC	2 cut(s)	412, 558
DdeI	CTNAG	1 cut(s)	368
DpnI	GATC	2 cut(s)	76, 320
DpnII	GATC	2 cut(s)	74, 318
DriI	GACNNNNNGTC	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	209
Eam1105I	GACNNNNNGTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	209
EciI	GGCGGA	1 cut(s)	502
Eco130I	CCWWGG	1 cut(s)	587
Eco24I	GRGCYC	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	257
Eco81I	CCTNAGG	1 cut(s)	368
Eco88I	CYCGRG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	587
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	587
Esp3I	CGTCTC	2 cut(s)	249, 458
FaeI	CATG	1 cut(s)	10
FaiI	YATR	4 cut(s)	8, 461, 533, 581
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	1 cut(s)	6
FauI	CCCGC	1 cut(s)	93
FblI	GTMKAC	1 cut(s)	239
Fnu4HI	GCNGC	3 cut(s)	35, 89, 334
FokI	GGATG	2 cut(s)	71, 294
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	3 cut(s)	35, 89, 334
FspBI	CTAG	2 cut(s)	438, 588
GluI	GCNGC	3 cut(s)	35, 89, 334
HaeIII	GGCC	2 cut(s)	37, 483
HapII	CCGG	4 cut(s)	161, 311, 426, 539
HgaI	GACGC	1 cut(s)	503
Hin1II	CATG	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	3 cut(s)	216, 253, 304
HpaII	CCGG	4 cut(s)	161, 311, 426, 539
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188I	TCNGA	5 cut(s)	74, 215, 274, 345, 381
Hpy188III	TCNNGA	2 cut(s)	49, 539
Hpy8I	GTNNAC	1 cut(s)	240
HpyAV	CCTTC	2 cut(s)	128, 223
HpyCH4IV	ACGT	4 cut(s)	24, 242, 467, 474
HpyCH4V	TGCA	2 cut(s)	327, 573
HpyF10VI	GCNNNNNNNGC	3 cut(s)	333, 503, 512
HpyF3I	CTNAG	1 cut(s)	368
HpySE526I	ACGT	4 cut(s)	24, 242, 467, 474
Hsp92II	CATG	1 cut(s)	10
Kpn2I	TCCGGA	1 cut(s)	538
KroI	GCCGGC	1 cut(s)	425
KroNI	GCCGGC	1 cut(s)	427
Kzo9I	GATC	2 cut(s)	74, 318
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	2 cut(s)	31, 232
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	2 cut(s)	438, 588
MaeII	ACGT	4 cut(s)	24, 242, 467, 474
MalI	GATC	2 cut(s)	76, 320
MbiI	CCGCTC	2 cut(s)	34, 235
MboI	GATC	2 cut(s)	74, 318
MboII	GAAGA	3 cut(s)	173, 196, 387
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	3 cut(s)	43, 374, 382
MroI	TCCGGA	1 cut(s)	538
MroNI	GCCGGC	1 cut(s)	425
MseI	TTAA	1 cut(s)	525
MspA1I	CMGCKG	2 cut(s)	250, 418
MspI	CCGG	4 cut(s)	161, 311, 426, 539
MspR9I	CCNGG	1 cut(s)	161
Mva1269I	GAATGC	2 cut(s)	195, 506
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	3 cut(s)	333, 503, 512
NaeI	GCCGGC	1 cut(s)	427
NciI	CCSGG	1 cut(s)	161
NdeII	GATC	2 cut(s)	74, 318
NgoMIV	GCCGGC	1 cut(s)	425
NlaIII	CATG	1 cut(s)	10
PciSI	GCTCTTC	1 cut(s)	209
PctI	GAATGC	2 cut(s)	195, 506
PdiI	GCCGGC	1 cut(s)	427
PfeI	GAWTC	3 cut(s)	216, 253, 304
PkrI	GCNGC	3 cut(s)	36, 90, 335
Psp1406I	AACGTT	1 cut(s)	24
PspPI	GGNCC	2 cut(s)	36, 481
RsaI	GTAC	2 cut(s)	413, 559
RsaNI	GTAC	2 cut(s)	412, 558
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	3 cut(s)	35, 89, 334
Sau3AI	GATC	2 cut(s)	74, 318
Sau96I	GGNCC	2 cut(s)	36, 481
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	6 cut(s)	27, 245, 470, 477, 531, 593
SfaNI	GCATC	1 cut(s)	349
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	3 cut(s)	43, 374, 382
SsiI	CCGC	8 cut(s)	34, 86, 235, 248, 333, 418, 513, 549
SspMI	CTAG	2 cut(s)	438, 588
StyD4I	CCNGG	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	587
TaiI	ACGT	4 cut(s)	27, 245, 470, 477
TaqI	TCGA	3 cut(s)	18, 50, 219
TaqII	GACCGA	1 cut(s)	174
TasI	AATT	3 cut(s)	43, 374, 382
TatI	WGTACW	1 cut(s)	557
TauI	GCSGC	2 cut(s)	37, 336
TfiI	GAWTC	3 cut(s)	216, 253, 304
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	2 cut(s)	285, 329
TseI	GCWGC	1 cut(s)	88
TspGWI	ACGGA	2 cut(s)	116, 461
TspRI	CASTG	2 cut(s)	285, 329
XapI	RAATTY	1 cut(s)	374
XmaJI	CCTAGG	1 cut(s)	587
XmiI	GTMKAC	1 cut(s)	239
XspI	CTAG	2 cut(s)	438, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.