Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0005467

Physical Location & Seq

Genomic Coordinates Forward (+)

32642314 .. 32645227

Gene Structure 2914 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1260400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAAGAACGACGGGGACGACGACGTTTTGGAACCGCCCATCAATTTCTCGATGGTGGAGGATGGCATTTTCAGATCCGGCTTCCCGCAGCCGTCCAATTTTCCTTTCCTCAAATCGCTTAATCTCCGATCAATCATATATTTGTGTCCTGAGCCGTACCCAGAGGCGAATTTGGAGTTTCTTCGGTCTCAAAATATTCGGCTACTCCAGTTTGGAATTGAGGGAAAGACGGAGCCTTCTGTATCTATTCTTAAGGATACCATCTTGGAGGCTCTGAAAATCCTTATTGATGGGAGAAATCATCCAGTTTTGATCCACTGCAAGCGTGGAAAGCATCGGACGGGTTGTCTTGTTGGTTGCCTACGAAAATTTCAGAATTGGTGTTTGTCTTCTGTGTTTGAGGAGTACCAGCGTTTTGCCGGCGTGAAATCTAGACCAACAGATTTGAGATTTATACAAGGATTTGACATAATGCTGCTGAAGCAGTGCCTGTACAGCATTATCTACCAGTATCAAGGTTACGGTTCAAACAAGAGAAGGTTGTTATACAGAGAAGAGAATTTACAGAAGCCCCAAACCATGAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Y_phosphatase2

Protein Analysis

197

Amino Acids

22.78

Weight (kDa)

9.01

Isoelectric Point (pI)

59.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Y_phosphatase2	PF03162	12 - 162	1.1e-58	Tyrosine phosphatase family
PTP-NADK	PF22741	60 - 125	1.4e-07	DSP-PTPase phosphatase fused to NAD+ Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02800 AT5G16480 AT5G16480
fragaria_vesca	FvH4_6g00520
malus_domestica	MD04G1244500.v1.1 MD12G1260400.v1.1 MD16G1025100.v1.1
prunus_persica	Prupe.1G328300_v2.0.a1 Prupe.6G361100_v2.0.a1
pyrus_communis	pycom04g21540 pycom12g23850 pycom16g02110
rosa_chinensis	RchiOBHm_Chr3g0447901 RchiOBHm_Chr4g0441711
rosa_laevigata	RLG00000006073 RLG00000025962
rosa_multiflora	Rmu_sc0005969.1_g000003 Rmu_sc0033808.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382540 Rroxscaffold_6G00426100
rosa_rugosa	Rorug02G0606900
rosa_samantha	Rh3AG006200 Rh3BG005800 Rh3CG006100 Rh3DG006400 Rh4AG387000 Rh4DG394100
rosa_wichuraiana	Rw3G000480 Rw4G033440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	35, 86
AclWI	GGATC	2 cut(s)	69, 307
AcsI	RAATTY	3 cut(s)	169, 368, 559
AcuI	CTGAAG	1 cut(s)	500
AfaI	GTAC	3 cut(s)	158, 407, 494
AflII	CTTAAG	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	528
AhdI	GACNNNNNGTC	1 cut(s)	345
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	2 cut(s)	69, 307
AlwNI	CAGNNNCTG	1 cut(s)	490
ApeKI	GCWGC	2 cut(s)	88, 475
ApoI	RAATTY	3 cut(s)	169, 368, 559
BarI	GAAGNNNNNNTAC	2 cut(s)	546, 578
BbsI	GAAGAC	1 cut(s)	381
BbvI	GCAGC	2 cut(s)	100, 462
BccI	CCATC	5 cut(s)	46, 47, 56, 269, 284
BceAI	ACGGC	2 cut(s)	76, 139
BciVI	GTATCC	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	1 cut(s)	432
BfrI	CTTAAG	1 cut(s)	251
BfuI	GTATCC	1 cut(s)	250
BisI	GCNGC	2 cut(s)	89, 476
BlsI	GCNGC	2 cut(s)	90, 477
BmeRI	GACNNNNNGTC	1 cut(s)	345
BmiI	GGNNCC	2 cut(s)	33, 234
BmsI	GCATC	1 cut(s)	343
BpiI	GAAGAC	1 cut(s)	381
BpmI	CTGGAG	1 cut(s)	191
Bpu10I	CCTNAGC	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	192
Bse118I	RCCGGY	1 cut(s)	419
Bse1I	ACTGG	3 cut(s)	208, 305, 508
BseGI	GGATG	2 cut(s)	67, 301
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	3 cut(s)	208, 305, 508
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	2 cut(s)	100, 462
BsiSI	CCGG	2 cut(s)	78, 420
BslFI	GGGAC	1 cut(s)	29
BsmAI	GTCTC	1 cut(s)	192
BsmFI	GGGAC	1 cut(s)	29
Bso31I	GGTCTC	1 cut(s)	192
Bsp1407I	TGTACA	1 cut(s)	492
Bsp143I	GATC	3 cut(s)	74, 128, 312
BspACI	CCGC	2 cut(s)	35, 86
BspCNI	CTCAG	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	33, 234
BspPI	GGATC	2 cut(s)	69, 307
BspTI	CTTAAG	1 cut(s)	251
BspTNI	GGTCTC	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	419
BsrGI	TGTACA	1 cut(s)	492
BsrI	ACTGG	3 cut(s)	208, 305, 508
BssAI	RCCGGY	1 cut(s)	419
BssMI	GATC	3 cut(s)	74, 128, 312
Bst4CI	ACNGT	1 cut(s)	524
Bst6I	CTCTTC	1 cut(s)	549
BstAFI	CTTAAG	1 cut(s)	251
BstAUI	TGTACA	1 cut(s)	492
BstC8I	GCNNGC	2 cut(s)	323, 421
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	2 cut(s)	67, 301
BstKTI	GATC	3 cut(s)	77, 131, 315
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	3 cut(s)	74, 128, 312
BstMWI	GCNNNNNNNGC	3 cut(s)	331, 481, 495
BstV1I	GCAGC	2 cut(s)	100, 462
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	1 cut(s)	74
BstYI	RGATCY	1 cut(s)	74
BsuI	GTATCC	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	67, 301
BtsI	GCAGTG	2 cut(s)	316, 491
BtsIMutI	CAGTG	2 cut(s)	316, 491
Cac8I	GCNNGC	2 cut(s)	323, 421
CaiI	CAGNNNCTG	1 cut(s)	490
Cfr10I	RCCGGY	1 cut(s)	419
Csp6I	GTAC	3 cut(s)	157, 406, 493
CviAII	CATG	1 cut(s)	580
CviJI	RGCY	7 cut(s)	81, 91, 154, 202, 235, 272, 571
CviKI_1	RGCY	7 cut(s)	81, 91, 154, 202, 235, 272, 571
CviQI	GTAC	3 cut(s)	157, 406, 493
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	3 cut(s)	76, 130, 314
DpnII	GATC	3 cut(s)	74, 128, 312
DriI	GACNNNNNGTC	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	549
Eam1105I	GACNNNNNGTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	549
Eco31I	GGTCTC	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	500
FaeI	CATG	1 cut(s)	583
FaiI	YATR	6 cut(s)	137, 139, 455, 470, 547, 581
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	1 cut(s)	579
FauI	CCCGC	1 cut(s)	93
Fnu4HI	GCNGC	2 cut(s)	89, 476
FokI	GGATG	2 cut(s)	74, 288
Fsp4HI	GCNGC	2 cut(s)	89, 476
FspBI	CTAG	1 cut(s)	432
GluI	GCNGC	2 cut(s)	89, 476
GsuI	CTGGAG	1 cut(s)	191
HapII	CCGG	2 cut(s)	78, 420
Hin1II	CATG	1 cut(s)	583
HpaII	CCGG	2 cut(s)	78, 420
Hpy188I	TCNGA	5 cut(s)	74, 128, 276, 339, 375
Hpy188III	TCNNGA	3 cut(s)	49, 149, 432
Hpy99I	CGWCG	3 cut(s)	14, 23, 26
HpyAV	CCTTC	2 cut(s)	246, 531
HpyCH4III	ACNGT	1 cut(s)	524
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	1 cut(s)	321
HpyF10VI	GCNNNNNNNGC	3 cut(s)	331, 481, 495
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	583
KroI	GCCGGC	1 cut(s)	419
KroNI	GCCGGC	1 cut(s)	421
Kzo9I	GATC	3 cut(s)	74, 128, 312
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	9 cut(s)	91, 162, 174, 221, 318, 422, 433, 503, 521
Lsp1109I	GCAGC	2 cut(s)	100, 462
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	1 cut(s)	432
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	3 cut(s)	76, 130, 314
MboI	GATC	3 cut(s)	74, 128, 312
MboII	GAAGA	4 cut(s)	16, 173, 381, 566
MflI	RGATCY	1 cut(s)	74
MluCI	AATT	7 cut(s)	43, 97, 169, 216, 368, 376, 559
MnlI	CCTC	6 cut(s)	52, 119, 157, 214, 262, 394
MroNI	GCCGGC	1 cut(s)	419
MseI	TTAA	3 cut(s)	120, 252, 589
MspCI	CTTAAG	1 cut(s)	251
MspI	CCGG	2 cut(s)	78, 420
MwoI	GCNNNNNNNGC	3 cut(s)	331, 481, 495
NaeI	GCCGGC	1 cut(s)	421
NdeII	GATC	3 cut(s)	74, 128, 312
NgoMIV	GCCGGC	1 cut(s)	419
NlaIII	CATG	1 cut(s)	583
NlaIV	GGNNCC	2 cut(s)	33, 234
PcsI	WCGNNNNNNNCGW	2 cut(s)	15, 18
PdiI	GCCGGC	1 cut(s)	421
PkrI	GCNGC	2 cut(s)	90, 477
PspN4I	GGNNCC	2 cut(s)	33, 234
PstNI	CAGNNNCTG	1 cut(s)	490
PsuI	RGATCY	1 cut(s)	74
RsaI	GTAC	3 cut(s)	158, 407, 494
RsaNI	GTAC	3 cut(s)	157, 406, 493
SaqAI	TTAA	3 cut(s)	120, 252, 589
SatI	GCNGC	2 cut(s)	89, 476
Sau3AI	GATC	3 cut(s)	74, 128, 312
SetI	ASST	3 cut(s)	27, 520, 542
SfaNI	GCATC	1 cut(s)	343
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	7 cut(s)	43, 97, 169, 216, 368, 376, 559
SsiI	CCGC	2 cut(s)	35, 86
SspI	AATATT	1 cut(s)	196
SspMI	CTAG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	524
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	1 cut(s)	50
TaqII	GACCGA	1 cut(s)	174
TasI	AATT	7 cut(s)	43, 97, 169, 216, 368, 376, 559
TatI	WGTACW	1 cut(s)	492
Tru1I	TTAA	3 cut(s)	120, 252, 589
Tru9I	TTAA	3 cut(s)	120, 252, 589
TscAI	CASTG	2 cut(s)	323, 491
TseI	GCWGC	2 cut(s)	88, 475
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	245
TspRI	CASTG	2 cut(s)	323, 491
Vha464I	CTTAAG	1 cut(s)	251
XapI	RAATTY	3 cut(s)	169, 368, 559
XbaI	TCTAGA	1 cut(s)	431
XcmI	CCANNNNNNNNNTGG	1 cut(s)	323
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.