Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005467

Physical Location & Seq

Genomic Coordinates Forward (+)

4123111 .. 4123986

Gene Structure 876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006073

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGAACGACGCTAGCTACGACGACTTATTCTTGGAGCCGCCGATCAATTTCTCAATGGTGGACGACGGAATATTCCGATCCGGCTTCCCTCAGCCTTCCAACTTCCCATTCCTCGAAACCCACCGTCTCCGATCGGTCATTTACCTCTGTCCGGAGCCCTATCCGGAGGAGAATCTGGAGTTTCTTAGGTCTCAAGATATTCAATTGTTTCAATTTGGAATTGAGGGGAAGAAAGAGCCATGTGTATGTAATGTTCCTATAGATACAATCTTGGAGGCACTGAAAGTGTTGATCGATGTGAGGAATCATCCGGTTCTGATTCACTGCAAGCGTGGGAAGCACCGGACGGGTTGTCTGGTTGGCTGCCTTAGAAAATTTCAGAACTGGTGTTTGTCTTCGGTGTTCGAGGAGTACCAGAGATTCGCTGGAGCCAAATCTCGGACGACGGATTTGAGGTTTATAGAGGCATTTGATTTAAATTGTTTGAAGGAGTGGGTTTGCAGCGTTGGCTACCAGAGTCAAGGTTATGCTCATTCCGGTCAGAGGAGGTGGCTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Y_phosphatase2

Protein Analysis

187

Amino Acids

21.59

Weight (kDa)

6.21

Isoelectric Point (pI)

57.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Y_phosphatase2	PF03162	13 - 163	7.3e-58	Tyrosine phosphatase family
PTP-NADK	PF22741	88 - 128	4.2e-06	DSP-PTPase phosphatase fused to NAD+ Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02800 AT5G16480 AT5G16480
fragaria_vesca	FvH4_6g00520
malus_domestica	MD04G1244500.v1.1 MD12G1260400.v1.1 MD16G1025100.v1.1
prunus_persica	Prupe.1G328300_v2.0.a1 Prupe.6G361100_v2.0.a1
pyrus_communis	pycom04g21540 pycom12g23850 pycom16g02110
rosa_chinensis	RchiOBHm_Chr3g0447901 RchiOBHm_Chr4g0441711
rosa_laevigata	RLG00000006073 RLG00000025962
rosa_multiflora	Rmu_sc0005969.1_g000003 Rmu_sc0033808.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382540 Rroxscaffold_6G00426100
rosa_rugosa	Rorug02G0606900
rosa_samantha	Rh3AG006200 Rh3BG005800 Rh3CG006100 Rh3DG006400 Rh4AG387000 Rh4DG394100
rosa_wichuraiana	Rw3G000480 Rw4G033440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	151, 163
AciI	CCGC	1 cut(s)	38
AclWI	GGATC	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	374
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	3 cut(s)	151, 438, 543
AgsI	TTSAA	3 cut(s)	203, 212, 487
AhdI	GACNNNNNGTC	1 cut(s)	351
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
Alw26I	GTCTC	2 cut(s)	131, 195
AlwI	GGATC	1 cut(s)	72
Aor13HI	TCCGGA	2 cut(s)	151, 163
ApeKI	GCWGC	2 cut(s)	363, 501
ApoI	RAATTY	1 cut(s)	374
ArsI	GACNNNNNNTTYG	2 cut(s)	433, 465
AsuNHI	GCTAGC	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	387
BbvCI	CCTCAGC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	350, 513
BcoDI	GTCTC	2 cut(s)	131, 195
BfaI	CTAG	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	258
BisI	GCNGC	3 cut(s)	38, 364, 502
BlsI	GCNGC	3 cut(s)	39, 365, 503
BmeRI	GACNNNNNGTC	1 cut(s)	351
BmiI	GGNNCC	3 cut(s)	36, 156, 430
BmtI	GCTAGC	1 cut(s)	15
BpiI	GAAGAC	1 cut(s)	387
BpmI	CTGGAG	2 cut(s)	197, 447
Bpu10I	CCTNAGC	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	177
Bsa29I	ATCGAT	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	195
BsaWI	WCCGGW	5 cut(s)	151, 163, 310, 342, 536
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 438, 543
Bse1I	ACTGG	1 cut(s)	389
BseAI	TCCGGA	2 cut(s)	151, 163
BseCI	ATCGAT	1 cut(s)	294
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	3 cut(s)	151, 438, 543
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	389
BseRI	GAGGAG	3 cut(s)	182, 422, 559
BseXI	GCAGC	2 cut(s)	350, 513
Bsh1285I	CGRYCG	1 cut(s)	134
BshVI	ATCGAT	1 cut(s)	294
BsiEI	CGRYCG	1 cut(s)	134
BsiSI	CCGG	6 cut(s)	81, 152, 164, 311, 343, 537
BslI	CCNNNNNNNGG	3 cut(s)	151, 438, 543
BsmAI	GTCTC	2 cut(s)	131, 195
BsmBI	CGTCTC	1 cut(s)	131
Bso31I	GGTCTC	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp13I	TCCGGA	2 cut(s)	151, 163
Bsp143I	GATC	4 cut(s)	42, 77, 131, 291
BspACI	CCGC	1 cut(s)	38
BspCNI	CTCAG	1 cut(s)	103
BspDI	ATCGAT	1 cut(s)	294
BspEI	TCCGGA	2 cut(s)	151, 163
BspLI	GGNNCC	3 cut(s)	36, 156, 430
BspOI	GCTAGC	1 cut(s)	15
BspPI	GGATC	1 cut(s)	72
BspTNI	GGTCTC	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	389
BssMI	GATC	4 cut(s)	42, 77, 131, 291
Bst4CI	ACNGT	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	13, 329
BstDEI	CTNAG	3 cut(s)	90, 185, 368
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	4 cut(s)	45, 80, 134, 294
BstMAI	GTCTC	2 cut(s)	131, 195
BstMBI	GATC	4 cut(s)	42, 77, 131, 291
BstMCI	CGRYCG	1 cut(s)	134
BstMWI	GCNNNNNNNGC	2 cut(s)	337, 507
BstSFI	CTRYAG	1 cut(s)	258
BstV1I	GCAGC	2 cut(s)	350, 513
BstV2I	GAAGAC	1 cut(s)	387
Bsu15I	ATCGAT	1 cut(s)	294
BsuTUI	ATCGAT	1 cut(s)	294
BtsCI	GGATG	1 cut(s)	307
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	2 cut(s)	278, 322
Cac8I	GCNNGC	2 cut(s)	13, 329
ClaI	ATCGAT	1 cut(s)	294
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	1 cut(s)	240
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	3 cut(s)	90, 185, 368
DpnI	GATC	4 cut(s)	44, 79, 133, 293
DpnII	GATC	4 cut(s)	42, 77, 131, 291
DraI	TTTAAA	1 cut(s)	477
DriI	GACNNNNNGTC	1 cut(s)	351
Eam1105I	GACNNNNNGTC	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	159
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	1 cut(s)	243
FaiI	YATR	6 cut(s)	241, 247, 260, 461, 528, 559
FatI	CATG	1 cut(s)	239
Fnu4HI	GCNGC	3 cut(s)	38, 364, 502
FokI	GGATG	1 cut(s)	294
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	3 cut(s)	38, 364, 502
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	3 cut(s)	38, 364, 502
GsuI	CTGGAG	2 cut(s)	197, 447
HapII	CCGG	6 cut(s)	81, 152, 164, 311, 343, 537
HgaI	GACGC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	243
HinfI	GANTC	5 cut(s)	172, 304, 319, 420, 517
HpaII	CCGG	6 cut(s)	81, 152, 164, 311, 343, 537
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	6 cut(s)	77, 131, 318, 381, 441, 543
Hpy188III	TCNNGA	4 cut(s)	152, 164, 176, 194
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	4 cut(s)	11, 23, 68, 448
HpyAV	CCTTC	2 cut(s)	105, 481
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4V	TGCA	2 cut(s)	327, 501
HpyF10VI	GCNNNNNNNGC	2 cut(s)	337, 507
HpyF3I	CTNAG	3 cut(s)	90, 185, 368
Hsp92II	CATG	1 cut(s)	243
Kpn2I	TCCGGA	2 cut(s)	151, 163
Kzo9I	GATC	4 cut(s)	42, 77, 131, 291
LmnI	GCTCC	3 cut(s)	34, 154, 428
Lsp1109I	GCAGC	2 cut(s)	350, 513
MaeI	CTAG	1 cut(s)	12
MalI	GATC	4 cut(s)	44, 79, 133, 293
MboI	GATC	4 cut(s)	42, 77, 131, 291
MboII	GAAGA	2 cut(s)	241, 387
MfeI	CAATTG	1 cut(s)	203
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	6 cut(s)	46, 203, 212, 219, 374, 478
MlyI	GAGTC	1 cut(s)	526
MmeI	TCCRAC	1 cut(s)	123
MroI	TCCGGA	2 cut(s)	151, 163
MseI	TTAA	1 cut(s)	476
MslI	CAYNNNNRTG	1 cut(s)	244
MspI	CCGG	6 cut(s)	81, 152, 164, 311, 343, 537
MunI	CAATTG	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	337, 507
NdeII	GATC	4 cut(s)	42, 77, 131, 291
NheI	GCTAGC	1 cut(s)	11
NlaIII	CATG	1 cut(s)	243
NlaIV	GGNNCC	3 cut(s)	36, 156, 430
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PfeI	GAWTC	4 cut(s)	172, 304, 319, 420
PkrI	GCNGC	3 cut(s)	39, 365, 503
Ple19I	CGATCG	1 cut(s)	134
PleI	GAGTC	1 cut(s)	525
PpsI	GAGTC	1 cut(s)	525
PspN4I	GGNNCC	3 cut(s)	36, 156, 430
PsrI	GAACNNNNNNTAC	2 cut(s)	237, 269
PvuI	CGATCG	1 cut(s)	134
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
RseI	CAYNNNNRTG	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	476
SatI	GCNGC	3 cut(s)	38, 364, 502
Sau3AI	GATC	4 cut(s)	42, 77, 131, 291
SchI	GAGTC	1 cut(s)	526
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	6 cut(s)	17, 147, 191, 458, 526, 551
SfcI	CTRYAG	1 cut(s)	258
SmiI	ATTTAAAT	1 cut(s)	477
SmiMI	CAYNNNNRTG	1 cut(s)	244
SmlI	CTYRAG	1 cut(s)	192
SmoI	CTYRAG	1 cut(s)	192
Sse9I	AATT	6 cut(s)	46, 203, 212, 219, 374, 478
SsiI	CCGC	1 cut(s)	38
SspI	AATATT	1 cut(s)	72
SspMI	CTAG	1 cut(s)	12
SwaI	ATTTAAAT	1 cut(s)	477
TaaI	ACNGT	1 cut(s)	125
TaqI	TCGA	3 cut(s)	114, 294, 405
TaqII	GACCGA	1 cut(s)	124
TasI	AATT	6 cut(s)	46, 203, 212, 219, 374, 478
TauI	GCSGC	1 cut(s)	40
TfiI	GAWTC	4 cut(s)	172, 304, 319, 420
Tru1I	TTAA	1 cut(s)	476
Tru9I	TTAA	1 cut(s)	476
TscAI	CASTG	2 cut(s)	285, 329
TseI	GCWGC	2 cut(s)	363, 501
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	81, 461
TspRI	CASTG	2 cut(s)	285, 329
XapI	RAATTY	1 cut(s)	374
XcmI	CCANNNNNNNNNTGG	1 cut(s)	422
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.