Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0005467

Physical Location & Seq

Genomic Coordinates Forward (+)

32063176 .. 32065905

Gene Structure 2730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1244500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGACAGAGCAGATGAAGATGAAGAACGACGAGTACGACGAAGTTTTGGAGCCACCCATCAATTTCTCCATGGTGGAGGACGGCATTTTCAGATCCAGCTTCCCGCAGCCGTCCAATTTTCCTTTCCTCAAATCGCTTAATCTCCGATCAATCATATATTTGTGTCCCGAGCCGTATCCAGAGGAGAATTTGGAGTTTCTTCGGTCTCAGAATATTCAGCTACTGCAGTTTGGAATTGAGGGGAAGACGGAGCCTTCTGTATCTATTCTTAAGGATACCATCCTGGAGGCTCTGAAAATCCTCATTGATGTGCGAAATCATCCAGTTTTGATCCACTGCAAGCGTGGAAAGCATCGGACAGGTTGCCTTGTTGGTTGCCTACGAAAATTTCAGAATTGGTGTTTGTCTTCTGTGTTTGAGGAGTACCAGCGTTTTGCCGGCGTGAAGTCTAGACCAACAGATTTGAGGTTTATAGAAGGATTTGACATAATGCTGCTGAGGCAGTGCCTGTACAGCATAATCTACCAGTATCAAGGTTACGGGTCGAACAAGAGGAGGTTGTTATACAAAGAAGACAATTTACAGAAGCCCCAAACCATGAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Y_phosphatase2

Protein Analysis

203

Amino Acids

23.76

Weight (kDa)

8.47

Isoelectric Point (pI)

68.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Y_phosphatase2	PF03162	18 - 166	3.2e-60	Tyrosine phosphatase family
PTP-NADK	PF22741	68 - 131	3.1e-07	DSP-PTPase phosphatase fused to NAD+ Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02800 AT5G16480 AT5G16480
fragaria_vesca	FvH4_6g00520
malus_domestica	MD04G1244500.v1.1 MD12G1260400.v1.1 MD16G1025100.v1.1
prunus_persica	Prupe.1G328300_v2.0.a1 Prupe.6G361100_v2.0.a1
pyrus_communis	pycom04g21540 pycom12g23850 pycom16g02110
rosa_chinensis	RchiOBHm_Chr3g0447901 RchiOBHm_Chr4g0441711
rosa_laevigata	RLG00000006073 RLG00000025962
rosa_multiflora	Rmu_sc0005969.1_g000003 Rmu_sc0033808.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382540 Rroxscaffold_6G00426100
rosa_rugosa	Rorug02G0606900
rosa_samantha	Rh3AG006200 Rh3BG005800 Rh3CG006100 Rh3DG006400 Rh4AG387000 Rh4DG394100
rosa_wichuraiana	Rw3G000480 Rw4G033440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	2 cut(s)	87, 325
AcsI	RAATTY	2 cut(s)	187, 386
AfaI	GTAC	3 cut(s)	35, 425, 512
AflII	CTTAAG	1 cut(s)	269
AjnI	CCWGG	1 cut(s)	282
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AluBI	AGCT	2 cut(s)	99, 220
AluI	AGCT	2 cut(s)	99, 220
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	2 cut(s)	87, 325
AlwNI	CAGNNNCTG	2 cut(s)	223, 508
Ama87I	CYCGRG	1 cut(s)	167
ApeKI	GCWGC	2 cut(s)	106, 493
ApoI	RAATTY	2 cut(s)	187, 386
AvaI	CYCGRG	1 cut(s)	167
BarI	GAAGNNNNNNTAC	2 cut(s)	564, 596
BbsI	GAAGAC	3 cut(s)	251, 399, 579
BbvCI	CCTCAGC	1 cut(s)	497
BbvI	GCAGC	2 cut(s)	118, 480
BccI	CCATC	2 cut(s)	65, 287
BceAI	ACGGC	3 cut(s)	94, 97, 157
BciT130I	CCWGG	1 cut(s)	284
BciVI	GTATCC	2 cut(s)	186, 268
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	1 cut(s)	450
BfmI	CTRYAG	1 cut(s)	224
BfrI	CTTAAG	1 cut(s)	269
BfuI	GTATCC	2 cut(s)	186, 268
BisI	GCNGC	2 cut(s)	107, 494
BlsI	GCNGC	2 cut(s)	108, 495
Bme1390I	CCNGG	1 cut(s)	284
BmeT110I	CYCGRG	1 cut(s)	167
BmiI	GGNNCC	2 cut(s)	51, 252
BmrFI	CCNGG	1 cut(s)	284
BmsI	GCATC	1 cut(s)	361
BpiI	GAAGAC	3 cut(s)	251, 399, 579
BpmI	CTGGAG	1 cut(s)	305
Bpu10I	CCTNAGC	1 cut(s)	497
BsaI	GGTCTC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	69
Bse118I	RCCGGY	1 cut(s)	437
Bse1I	ACTGG	2 cut(s)	323, 526
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	2 cut(s)	279, 319
BseMII	CTCAG	2 cut(s)	221, 488
BseNI	ACTGG	2 cut(s)	323, 526
BseRI	GAGGAG	3 cut(s)	197, 434, 568
BseXI	GCAGC	2 cut(s)	118, 480
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	438
BslFI	GGGAC	1 cut(s)	150
BsmAI	GTCTC	1 cut(s)	210
BsmFI	GGGAC	1 cut(s)	150
Bso31I	GGTCTC	1 cut(s)	210
BsoBI	CYCGRG	1 cut(s)	167
Bsp1407I	TGTACA	1 cut(s)	510
Bsp143I	GATC	3 cut(s)	92, 146, 330
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	1 cut(s)	104
BspCNI	CTCAG	2 cut(s)	220, 489
BspLI	GGNNCC	2 cut(s)	51, 252
BspMAI	CTGCAG	1 cut(s)	228
BspPI	GGATC	2 cut(s)	87, 325
BspTI	CTTAAG	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	437
BsrGI	TGTACA	1 cut(s)	510
BsrI	ACTGG	2 cut(s)	323, 526
BssAI	RCCGGY	1 cut(s)	437
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	3 cut(s)	92, 146, 330
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	284
BstAFI	CTTAAG	1 cut(s)	269
BstAUI	TGTACA	1 cut(s)	510
BstC8I	GCNNGC	2 cut(s)	341, 439
BstDEI	CTNAG	2 cut(s)	207, 497
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	2 cut(s)	279, 319
BstKTI	GATC	3 cut(s)	95, 149, 333
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	3 cut(s)	92, 146, 330
BstMWI	GCNNNNNNNGC	3 cut(s)	349, 499, 513
BstNI	CCWGG	1 cut(s)	284
BstSCI	CCNGG	1 cut(s)	282
BstSFI	CTRYAG	1 cut(s)	224
BstV1I	GCAGC	2 cut(s)	118, 480
BstV2I	GAAGAC	3 cut(s)	251, 399, 579
BstX2I	RGATCY	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	92
BsuI	GTATCC	2 cut(s)	186, 268
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	279, 319
BtsI	GCAGTG	2 cut(s)	334, 509
BtsIMutI	CAGTG	2 cut(s)	334, 509
Cac8I	GCNNGC	2 cut(s)	341, 439
CaiI	CAGNNNCTG	2 cut(s)	223, 508
Cfr10I	RCCGGY	1 cut(s)	437
Csp6I	GTAC	3 cut(s)	34, 424, 511
CviAII	CATG	2 cut(s)	70, 598
CviJI	RGCY	8 cut(s)	52, 99, 109, 172, 220, 253, 290, 589
CviKI_1	RGCY	8 cut(s)	52, 99, 109, 172, 220, 253, 290, 589
CviQI	GTAC	3 cut(s)	34, 424, 511
DdeI	CTNAG	2 cut(s)	207, 497
DpnI	GATC	3 cut(s)	94, 148, 332
DpnII	GATC	3 cut(s)	92, 146, 330
Eco130I	CCWWGG	1 cut(s)	69
Eco31I	GGTCTC	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	2 cut(s)	73, 601
FaiI	YATR	8 cut(s)	71, 155, 157, 473, 488, 518, 565, 599
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	2 cut(s)	69, 597
FauI	CCCGC	1 cut(s)	111
Fnu4HI	GCNGC	2 cut(s)	107, 494
FokI	GGATG	2 cut(s)	266, 306
Fsp4HI	GCNGC	2 cut(s)	107, 494
FspBI	CTAG	1 cut(s)	450
GluI	GCNGC	2 cut(s)	107, 494
GsuI	CTGGAG	1 cut(s)	305
HapII	CCGG	1 cut(s)	438
Hin1II	CATG	2 cut(s)	73, 601
HpaII	CCGG	1 cut(s)	438
Hpy188I	TCNGA	6 cut(s)	92, 146, 210, 294, 357, 393
Hpy188III	TCNNGA	3 cut(s)	167, 179, 450
Hpy99I	CGWCG	2 cut(s)	32, 41
HpyAV	CCTTC	2 cut(s)	264, 470
HpyCH4V	TGCA	2 cut(s)	226, 339
HpyF10VI	GCNNNNNNNGC	3 cut(s)	349, 499, 513
HpyF3I	CTNAG	2 cut(s)	207, 497
Hsp92II	CATG	2 cut(s)	73, 601
KroI	GCCGGC	1 cut(s)	437
KroNI	GCCGGC	1 cut(s)	439
Kzo9I	GATC	3 cut(s)	92, 146, 330
LmnI	GCTCC	2 cut(s)	49, 250
Lsp1109I	GCAGC	2 cut(s)	118, 480
LweI	GCATC	1 cut(s)	361
MaeI	CTAG	1 cut(s)	450
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	3 cut(s)	94, 148, 332
MboI	GATC	3 cut(s)	92, 146, 330
MboII	GAAGA	6 cut(s)	28, 34, 191, 256, 399, 584
MflI	RGATCY	1 cut(s)	92
MluCI	AATT	7 cut(s)	61, 115, 187, 234, 386, 394, 577
MroNI	GCCGGC	1 cut(s)	437
MseI	TTAA	2 cut(s)	138, 270
MslI	CAYNNNNRTG	1 cut(s)	308
MspCI	CTTAAG	1 cut(s)	269
MspI	CCGG	1 cut(s)	438
MspR9I	CCNGG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	3 cut(s)	349, 499, 513
NaeI	GCCGGC	1 cut(s)	439
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	3 cut(s)	92, 146, 330
NgoMIV	GCCGGC	1 cut(s)	437
NlaIII	CATG	2 cut(s)	73, 601
NlaIV	GGNNCC	2 cut(s)	51, 252
PcsI	WCGNNNNNNNCGW	2 cut(s)	33, 36
PdiI	GCCGGC	1 cut(s)	439
PfoI	TCCNGGA	1 cut(s)	282
PkrI	GCNGC	2 cut(s)	108, 495
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	2 cut(s)	51, 252
PsrI	GAACNNNNNNTAC	2 cut(s)	17, 49
PstI	CTGCAG	1 cut(s)	228
PstNI	CAGNNNCTG	2 cut(s)	223, 508
PsuI	RGATCY	1 cut(s)	92
RsaI	GTAC	3 cut(s)	35, 425, 512
RsaNI	GTAC	3 cut(s)	34, 424, 511
RseI	CAYNNNNRTG	1 cut(s)	308
SaqAI	TTAA	2 cut(s)	138, 270
SatI	GCNGC	2 cut(s)	107, 494
Sau3AI	GATC	3 cut(s)	92, 146, 330
ScrFI	CCNGG	1 cut(s)	284
SetI	ASST	6 cut(s)	101, 222, 364, 470, 538, 560
SfaNI	GCATC	1 cut(s)	361
SfcI	CTRYAG	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	7 cut(s)	61, 115, 187, 234, 386, 394, 577
SsiI	CCGC	1 cut(s)	104
SspI	AATATT	1 cut(s)	214
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	1 cut(s)	282
StyI	CCWWGG	1 cut(s)	69
TaqI	TCGA	1 cut(s)	545
TaqII	GACCGA	1 cut(s)	192
TasI	AATT	7 cut(s)	61, 115, 187, 234, 386, 394, 577
TatI	WGTACW	1 cut(s)	510
Tru1I	TTAA	2 cut(s)	138, 270
Tru9I	TTAA	2 cut(s)	138, 270
TscAI	CASTG	2 cut(s)	341, 509
TseI	GCWGC	2 cut(s)	106, 493
TspDTI	ATGAA	2 cut(s)	29, 35
TspGWI	ACGGA	1 cut(s)	263
TspRI	CASTG	2 cut(s)	341, 509
Vha464I	CTTAAG	1 cut(s)	269
XapI	RAATTY	2 cut(s)	187, 386
XbaI	TCTAGA	1 cut(s)	449
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341
XspI	CTAG	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.