Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005467

Physical Location & Seq

Genomic Coordinates Reverse (-)

606285 .. 607907

Gene Structure 1623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G02800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTGTTTGATTATGGAAACGGATGATCACAACGGTGATGTTTTAGCGCCGCCGTCGAATTTCTCGATGGTTGAAGATGGAATTTATCGATCTGGGTTTCCTCGACCTGAGAATTTCAGTTTCCTTAAAACCCTAAATCTTCGTTCCATCATTTATCTGTGTCCTGAACCATACCCAGAGGAGAATCTCAAGTTTCTTGAGGCTAACAACATTAAGCTTTACCAATTTGGAATCGAAGGCAAAACGGATCCTCCAACTCCTATGCCAAAAGATACAGTTTTGGATGCTCTCAAAGTTTTAGTTGATGTGAGAAACCATCCAATTCTCATACATTGCAAACGCGGGAAGCATAGGACAGGTTGTCTAGTGGGATGCTTAAGAAAAGTTCAGAGCTGGTGTTTATCATCGGTGCTCGAGGAGTACCAGAAGAACGCGGGTTTAAAATGGAGACAAAGGGACTTGAATTTTATAGAGGCATTTGATATAGTGAGCTTGAGACAGTGTCTCTTGAGCATCATGTATCAGTATCACGGTTATGGCTTCAAGAGGAGAAGGTTGGCATATGAAGAAGAGAATGTCAAGACACCAAAACCGCAGGCTGCTAGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Y_phosphatase2

Protein Analysis

203

Amino Acids

23.51

Weight (kDa)

8.63

Isoelectric Point (pI)

52.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Y_phosphatase2	PF03162	17 - 163	2.4e-58	Tyrosine phosphatase family
PTP-NADK	PF22741	69 - 131	4e-07	DSP-PTPase phosphatase fused to NAD+ Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02800 AT5G16480 AT5G16480
fragaria_vesca	FvH4_6g00520
malus_domestica	MD04G1244500.v1.1 MD12G1260400.v1.1 MD16G1025100.v1.1
prunus_persica	Prupe.1G328300_v2.0.a1 Prupe.6G361100_v2.0.a1
pyrus_communis	pycom04g21540 pycom12g23850 pycom16g02110
rosa_chinensis	RchiOBHm_Chr3g0447901 RchiOBHm_Chr4g0441711
rosa_laevigata	RLG00000006073 RLG00000025962
rosa_multiflora	Rmu_sc0005969.1_g000003 Rmu_sc0033808.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382540 Rroxscaffold_6G00426100
rosa_rugosa	Rorug02G0606900
rosa_samantha	Rh3AG006200 Rh3BG005800 Rh3CG006100 Rh3DG006400 Rh4AG387000 Rh4DG394100
rosa_wichuraiana	Rw3G000480 Rw4G033440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	342, 434
AciI	CCGC	4 cut(s)	50, 342, 434, 593
AclWI	GGATC	2 cut(s)	242, 255
AcsI	RAATTY	4 cut(s)	58, 81, 112, 463
AfaI	GTAC	1 cut(s)	422
AflII	CTTAAG	1 cut(s)	376
AgsI	TTSAA	3 cut(s)	74, 463, 544
AhdI	GACNNNNNGTC	1 cut(s)	360
AleI	CACNNNNGTG	1 cut(s)	33
AluBI	AGCT	3 cut(s)	217, 393, 492
AluI	AGCT	3 cut(s)	217, 393, 492
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	3 cut(s)	442, 490, 509
AlwI	GGATC	2 cut(s)	242, 255
Ama87I	CYCGRG	1 cut(s)	413
ApeKI	GCWGC	1 cut(s)	599
ApoI	RAATTY	4 cut(s)	58, 81, 112, 463
AspLEI	GCGC	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	47
AvaI	CYCGRG	1 cut(s)	413
BamHI	GGATCC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	586
BccI	CCATC	4 cut(s)	61, 71, 155, 324
BceAI	ACGGC	1 cut(s)	37
BclI	TGATCA	1 cut(s)	25
BcoDI	GTCTC	3 cut(s)	442, 490, 509
BfaI	CTAG	2 cut(s)	365, 603
BfoI	RGCGCY	1 cut(s)	50
BfrI	CTTAAG	1 cut(s)	376
BisI	GCNGC	2 cut(s)	50, 600
BlsI	GCNGC	2 cut(s)	51, 601
BmeRI	GACNNNNNGTC	1 cut(s)	360
BmeT110I	CYCGRG	1 cut(s)	413
BmiI	GGNNCC	1 cut(s)	249
BmsI	GCATC	3 cut(s)	274, 362, 522
BpuEI	CTTGAG	4 cut(s)	173, 218, 514, 529
Bsa29I	ATCGAT	1 cut(s)	88
BsaXI	ACNNNNNCTCC	2 cut(s)	235, 265
Bse3DI	GCAATG	1 cut(s)	331
BseCI	ATCGAT	1 cut(s)	88
BseGI	GGATG	4 cut(s)	28, 289, 316, 377
BseMI	GCAATG	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	99
BseRI	GAGGAG	3 cut(s)	194, 431, 562
BseXI	GCAGC	1 cut(s)	586
Bsh1236I	CGCG	2 cut(s)	342, 434
BshVI	ATCGAT	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	414
BsiHKCI	CYCGRG	1 cut(s)	413
BslFI	GGGAC	1 cut(s)	470
BsmAI	GTCTC	3 cut(s)	442, 490, 509
BsmFI	GGGAC	1 cut(s)	470
BsoBI	CYCGRG	1 cut(s)	413
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	3 cut(s)	25, 89, 247
BspACI	CCGC	4 cut(s)	50, 342, 434, 593
BspCNI	CTCAG	1 cut(s)	100
BspDI	ATCGAT	1 cut(s)	88
BspFNI	CGCG	2 cut(s)	342, 434
BspLI	GGNNCC	1 cut(s)	249
BspPI	GGATC	2 cut(s)	242, 255
BspTI	CTTAAG	1 cut(s)	376
BsrDI	GCAATG	1 cut(s)	331
BssMI	GATC	3 cut(s)	25, 89, 247
Bst4CI	ACNGT	4 cut(s)	35, 277, 501, 533
Bst6I	CTCTTC	1 cut(s)	564
BstAFI	CTTAAG	1 cut(s)	376
BstC8I	GCNNGC	1 cut(s)	597
BstDEI	CTNAG	1 cut(s)	108
BstF5I	GGATG	4 cut(s)	28, 289, 316, 377
BstFNI	CGCG	2 cut(s)	342, 434
BstH2I	RGCGCY	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	3 cut(s)	28, 92, 250
BstMAI	GTCTC	3 cut(s)	442, 490, 509
BstMBI	GATC	3 cut(s)	25, 89, 247
BstUI	CGCG	2 cut(s)	342, 434
BstV1I	GCAGC	1 cut(s)	586
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
Bsu15I	ATCGAT	1 cut(s)	88
BsuTUI	ATCGAT	1 cut(s)	88
BtsCI	GGATG	4 cut(s)	28, 289, 316, 377
BtsIMutI	CAGTG	1 cut(s)	506
Cac8I	GCNNGC	1 cut(s)	597
CfoI	GCGC	1 cut(s)	49
ClaI	ATCGAT	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	421
CviAII	CATG	1 cut(s)	517
CviJI	RGCY	6 cut(s)	203, 217, 393, 492, 540, 599
CviKI_1	RGCY	6 cut(s)	203, 217, 393, 492, 540, 599
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	3 cut(s)	27, 91, 249
DpnII	GATC	3 cut(s)	25, 89, 247
DraI	TTTAAA	1 cut(s)	441
DriI	GACNNNNNGTC	1 cut(s)	360
Eam1104I	CTCTTC	1 cut(s)	564
Eam1105I	GACNNNNNGTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	564
Eco88I	CYCGRG	1 cut(s)	413
FaeI	CATG	1 cut(s)	520
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	1 cut(s)	516
FauI	CCCGC	2 cut(s)	335, 427
FauNDI	CATATG	1 cut(s)	562
FbaI	TGATCA	1 cut(s)	25
Fnu4HI	GCNGC	2 cut(s)	50, 600
FokI	GGATG	4 cut(s)	35, 296, 303, 384
Fsp4HI	GCNGC	2 cut(s)	50, 600
FspBI	CTAG	2 cut(s)	365, 603
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	2 cut(s)	50, 600
HaeII	RGCGCY	1 cut(s)	50
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	1 cut(s)	520
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	2 cut(s)	184, 231
HphI	GGTGA	1 cut(s)	47
Hpy188I	TCNGA	1 cut(s)	390
Hpy188III	TCNNGA	6 cut(s)	64, 164, 197, 508, 544, 580
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	2 cut(s)	230, 546
HpyCH4III	ACNGT	4 cut(s)	35, 277, 501, 533
HpyCH4V	TGCA	1 cut(s)	336
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	520
HspAI	GCGC	1 cut(s)	47
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	25, 89, 247
LpnPI	CCDG	8 cut(s)	78, 120, 177, 189, 342, 379, 437, 581
Lsp1109I	GCAGC	1 cut(s)	586
LweI	GCATC	3 cut(s)	274, 362, 522
MaeI	CTAG	2 cut(s)	365, 603
MalI	GATC	3 cut(s)	27, 91, 249
MboI	GATC	3 cut(s)	25, 89, 247
MboII	GAAGA	5 cut(s)	86, 131, 439, 578, 581
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	6 cut(s)	58, 81, 112, 224, 321, 463
MmeI	TCCRAC	1 cut(s)	278
MnlI	CCTC	7 cut(s)	111, 172, 193, 261, 409, 466, 540
MseI	TTAA	5 cut(s)	126, 213, 377, 440, 610
MslI	CAYNNNNRTG	2 cut(s)	33, 534
MspCI	CTTAAG	1 cut(s)	376
MvnI	CGCG	2 cut(s)	342, 434
NdeI	CATATG	1 cut(s)	562
NdeII	GATC	3 cut(s)	25, 89, 247
NlaIII	CATG	1 cut(s)	520
NlaIV	GGNNCC	1 cut(s)	249
OliI	CACNNNNGTG	1 cut(s)	33
PaeR7I	CTCGAG	1 cut(s)	413
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PfeI	GAWTC	2 cut(s)	184, 231
PflFI	GACNNNGTC	1 cut(s)	501
PkrI	GCNGC	2 cut(s)	51, 601
PspN4I	GGNNCC	1 cut(s)	249
PspXI	VCTCGAGB	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	247
PsyI	GACNNNGTC	1 cut(s)	501
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
RseI	CAYNNNNRTG	2 cut(s)	33, 534
SaqAI	TTAA	5 cut(s)	126, 213, 377, 440, 610
SatI	GCNGC	2 cut(s)	50, 600
Sau3AI	GATC	3 cut(s)	25, 89, 247
SduI	GDGCHC	1 cut(s)	414
SetI	ASST	6 cut(s)	109, 219, 361, 395, 494, 557
SfaNI	GCATC	3 cut(s)	274, 362, 522
Sfr274I	CTCGAG	1 cut(s)	413
SlaI	CTCGAG	1 cut(s)	413
SmiMI	CAYNNNNRTG	2 cut(s)	33, 534
SmlI	CTYRAG	6 cut(s)	188, 197, 376, 413, 493, 508
SmoI	CTYRAG	6 cut(s)	188, 197, 376, 413, 493, 508
Sse9I	AATT	6 cut(s)	58, 81, 112, 224, 321, 463
SsiI	CCGC	4 cut(s)	50, 342, 434, 593
SspMI	CTAG	2 cut(s)	365, 603
TaaI	ACNGT	4 cut(s)	35, 277, 501, 533
TaqI	TCGA	6 cut(s)	56, 65, 88, 103, 234, 414
TasI	AATT	6 cut(s)	58, 81, 112, 224, 321, 463
TauI	GCSGC	1 cut(s)	52
TfiI	GAWTC	2 cut(s)	184, 231
Tru1I	TTAA	5 cut(s)	126, 213, 377, 440, 610
Tru9I	TTAA	5 cut(s)	126, 213, 377, 440, 610
TscAI	CASTG	1 cut(s)	506
TseI	GCWGC	1 cut(s)	599
TspDTI	ATGAA	1 cut(s)	579
TspGWI	ACGGA	2 cut(s)	35, 260
TspRI	CASTG	1 cut(s)	506
Tth111I	GACNNNGTC	1 cut(s)	501
Vha464I	CTTAAG	1 cut(s)	376
XapI	RAATTY	4 cut(s)	58, 81, 112, 463
XhoI	CTCGAG	1 cut(s)	413
XspI	CTAG	2 cut(s)	365, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.