Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005467

Physical Location & Seq

Genomic Coordinates Reverse (-)

46957078 .. 46959607

Gene Structure 2530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00426100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGACGATGACGATGGAGAAGCAGAACAAGATGAACGACCACGACGACGTTTTGGAGCCGCCGATCAATTTCTCGATGGTGGAGGACGGCATTTTCAGATCTGGCTTCCCTCACCCGGCCAACTTCCCATTCCTCACGTCCCTCAATCTCCGATCAATCATATATTTGTGTCCCGAGCCATATCCAGAGGAGAATTTGGAGTTTCTTCGCTCTCAAAACATTCGGCTCCTCCAATTCGGAATTGAGGGAAAAACGGAGTCTGTAGCTATTCCCAAGGATACTATCTTGGAGGCTTTGAAAATCTTGATTGATGTGAGAAATCATCCTGTGTTGATCCATTGCAAGCGTGGAAAGCATCGGACGGGTTGTCTTGTTGGTTGCCTGCGAAAATTTCAGAATTGGTGTTTGTCTTCTGTGTTTGAGGAGTACCAGCGATTTGCTGGGGTGAAGTCGAGGCCAACAGATTTGAAATTCATAGAGGCATTTGACATAATGCGCTTGAGGCAATGCCTTTACAGCATTATCTACCAGTATCAAGGTTACGGTTCTAACAAGAGGCGATTGGTGTACAGAGATGAGAAGATACAGAAGCCCCAAACCATGAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Y_phosphatase2

Protein Analysis

203

Amino Acids

23.82

Weight (kDa)

9.0

Isoelectric Point (pI)

57.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Y_phosphatase2	PF03162	20 - 165	4.4e-59	Tyrosine phosphatase family
PTP-NADK	PF22741	93 - 132	7.6e-06	DSP-PTPase phosphatase fused to NAD+ Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02800 AT5G16480 AT5G16480
fragaria_vesca	FvH4_6g00520
malus_domestica	MD04G1244500.v1.1 MD12G1260400.v1.1 MD16G1025100.v1.1
prunus_persica	Prupe.1G328300_v2.0.a1 Prupe.6G361100_v2.0.a1
pyrus_communis	pycom04g21540 pycom12g23850 pycom16g02110
rosa_chinensis	RchiOBHm_Chr3g0447901 RchiOBHm_Chr4g0441711
rosa_laevigata	RLG00000006073 RLG00000025962
rosa_multiflora	Rmu_sc0005969.1_g000003 Rmu_sc0033808.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382540 Rroxscaffold_6G00426100
rosa_rugosa	Rorug02G0606900
rosa_samantha	Rh3AG006200 Rh3BG005800 Rh3CG006100 Rh3DG006400 Rh4AG387000 Rh4DG394100
rosa_wichuraiana	Rw3G000480 Rw4G033440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	59
AclWI	GGATC	1 cut(s)	328
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	3 cut(s)	193, 389, 470
AfaI	GTAC	2 cut(s)	428, 569
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	2 cut(s)	298, 469
AhdI	GACNNNNNGTC	1 cut(s)	366
AjiI	CACGTC	1 cut(s)	138
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
AlwI	GGATC	1 cut(s)	328
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	2 cut(s)	117, 455
ApoI	RAATTY	3 cut(s)	193, 389, 470
AspLEI	GCGC	1 cut(s)	498
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	2 cut(s)	104, 457
AvaI	CYCGRG	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	402
BccI	CCATC	2 cut(s)	7, 70
BceAI	ACGGC	1 cut(s)	103
BciVI	GTATCC	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	261
BfuI	GTATCC	1 cut(s)	271
BglII	AGATCT	1 cut(s)	98
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
Bme1390I	CCNGG	1 cut(s)	116
BmeRI	GACNNNNNGTC	1 cut(s)	366
BmeT110I	CYCGRG	1 cut(s)	173
BmgBI	CACGTC	1 cut(s)	138
BmiI	GGNNCC	2 cut(s)	57, 227
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	520
BpuMI	CCSGG	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	529
Bse3DI	GCAATG	2 cut(s)	337, 512
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	2 cut(s)	337, 512
BseNI	ACTGG	1 cut(s)	529
BseRI	GAGGAG	3 cut(s)	203, 218, 437
BseYI	CCCAGC	1 cut(s)	440
BshFI	GGCC	2 cut(s)	119, 457
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	2 cut(s)	124, 156
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmFI	GGGAC	2 cut(s)	124, 156
BsnI	GGCC	2 cut(s)	119, 457
BsoBI	CYCGRG	1 cut(s)	173
Bsp1407I	TGTACA	1 cut(s)	567
Bsp143I	GATC	4 cut(s)	63, 98, 152, 333
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	2 cut(s)	119, 457
BspLI	GGNNCC	2 cut(s)	57, 227
BspPI	GGATC	1 cut(s)	328
BsrDI	GCAATG	2 cut(s)	337, 512
BsrGI	TGTACA	1 cut(s)	567
BsrI	ACTGG	1 cut(s)	529
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	4 cut(s)	63, 98, 152, 333
BssT1I	CCWWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	545
BstAUI	TGTACA	1 cut(s)	567
BstC8I	GCNNGC	2 cut(s)	344, 383
BstF5I	GGATG	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	498
BstKTI	GATC	4 cut(s)	66, 101, 155, 336
BstMBI	GATC	4 cut(s)	63, 98, 152, 333
BstMWI	GCNNNNNNNGC	3 cut(s)	352, 502, 516
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	1 cut(s)	261
BstV2I	GAAGAC	1 cut(s)	402
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
BsuI	GTATCC	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	119, 457
BtrI	CACGTC	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	322
Cac8I	GCNNGC	2 cut(s)	344, 383
CfoI	GCGC	1 cut(s)	498
Csp6I	GTAC	2 cut(s)	427, 568
CviAII	CATG	1 cut(s)	601
CviJI	RGCY	9 cut(s)	58, 105, 119, 178, 226, 266, 293, 457, 592
CviKI_1	RGCY	9 cut(s)	58, 105, 119, 178, 226, 266, 293, 457, 592
CviQI	GTAC	2 cut(s)	427, 568
DpnI	GATC	4 cut(s)	65, 100, 154, 335
DpnII	GATC	4 cut(s)	63, 98, 152, 333
DriI	GACNNNNNGTC	1 cut(s)	366
EaeI	YGGCCR	1 cut(s)	117
Eam1105I	GACNNNNNGTC	1 cut(s)	366
Eco130I	CCWWGG	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	173
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	1 cut(s)	604
FaiI	YATR	6 cut(s)	161, 163, 181, 476, 491, 602
FaqI	GGGAC	2 cut(s)	124, 156
FatI	CATG	1 cut(s)	600
Fnu4HI	GCNGC	1 cut(s)	59
FokI	GGATG	1 cut(s)	309
Fsp4HI	GCNGC	1 cut(s)	59
GlaI	GCGC	1 cut(s)	497
GluI	GCNGC	1 cut(s)	59
GsaI	CCCAGC	1 cut(s)	444
HaeIII	GGCC	2 cut(s)	119, 457
HapII	CCGG	1 cut(s)	116
HhaI	GCGC	1 cut(s)	498
Hin1II	CATG	1 cut(s)	604
Hin6I	GCGC	1 cut(s)	496
HinP1I	GCGC	1 cut(s)	496
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	2 cut(s)	104, 457
Hpy166II	GTNNAC	1 cut(s)	568
Hpy188I	TCNGA	5 cut(s)	98, 152, 239, 360, 396
Hpy188III	TCNNGA	4 cut(s)	73, 173, 185, 304
Hpy8I	GTNNAC	1 cut(s)	568
Hpy99I	CGWCG	2 cut(s)	47, 50
HpyCH4III	ACNGT	1 cut(s)	545
HpyCH4IV	ACGT	2 cut(s)	48, 137
HpyCH4V	TGCA	1 cut(s)	342
HpyF10VI	GCNNNNNNNGC	3 cut(s)	352, 502, 516
HpySE526I	ACGT	2 cut(s)	48, 137
Hsp92II	CATG	1 cut(s)	604
HspAI	GCGC	1 cut(s)	496
Kzo9I	GATC	4 cut(s)	63, 98, 152, 333
LmnI	GCTCC	2 cut(s)	55, 231
LpnPI	CCDG	8 cut(s)	87, 129, 198, 339, 395, 426, 443, 542
LweI	GCATC	1 cut(s)	364
MaeII	ACGT	2 cut(s)	48, 137
MaeIII	GTNAC	1 cut(s)	539
MalI	GATC	4 cut(s)	65, 100, 154, 335
MboI	GATC	4 cut(s)	63, 98, 152, 333
MboII	GAAGA	3 cut(s)	197, 402, 592
MflI	RGATCY	1 cut(s)	98
MluCI	AATT	7 cut(s)	67, 193, 233, 240, 389, 397, 470
MlyI	GAGTC	1 cut(s)	266
MseI	TTAA	1 cut(s)	610
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	3 cut(s)	352, 502, 516
NciI	CCSGG	1 cut(s)	116
NdeII	GATC	4 cut(s)	63, 98, 152, 333
NlaIII	CATG	1 cut(s)	604
NlaIV	GGNNCC	2 cut(s)	57, 227
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PkrI	GCNGC	1 cut(s)	60
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PspFI	CCCAGC	1 cut(s)	440
PspN4I	GGNNCC	2 cut(s)	57, 227
PsuI	RGATCY	1 cut(s)	98
RsaI	GTAC	2 cut(s)	428, 569
RsaNI	GTAC	2 cut(s)	427, 568
SaqAI	TTAA	1 cut(s)	610
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	4 cut(s)	63, 98, 152, 333
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	116
SetI	ASST	4 cut(s)	51, 140, 268, 541
SfaNI	GCATC	1 cut(s)	364
SfcI	CTRYAG	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	499
SmoI	CTYRAG	1 cut(s)	499
Sse9I	AATT	7 cut(s)	67, 193, 233, 240, 389, 397, 470
SsiI	CCGC	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	545
TaiI	ACGT	2 cut(s)	51, 140
TaqI	TCGA	2 cut(s)	74, 452
TasI	AATT	7 cut(s)	67, 193, 233, 240, 389, 397, 470
TatI	WGTACW	1 cut(s)	567
TauI	GCSGC	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	610
Tru9I	TTAA	1 cut(s)	610
TspDTI	ATGAA	2 cut(s)	47, 463
TspGWI	ACGGA	1 cut(s)	269
XapI	RAATTY	3 cut(s)	193, 389, 470
XcmI	CCANNNNNNNNNTGG	2 cut(s)	344, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.